Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:17:02 (255397): wrapper (7.7.26015): starting
14:17:02 (255397): wrapper: running run_atlas (--nthreads 3)
[2026-04-27 14:17:02] Arguments: --nthreads 3
[2026-04-27 14:17:02] Threads: 3
[2026-04-27 14:17:02] Checking for CVMFS
[2026-04-27 14:17:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-27 14:17:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-27 14:17:03] Running cvmfs_config stat atlas.cern.ch
[2026-04-27 14:17:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-27 14:17:03] 2.9.2.0 108163 1304 67104 158927 0 49 33443834 36864001 0 130560 0 556989 99.980 51746 13285 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-27 14:17:03] CVMFS is ok
[2026-04-27 14:17:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-27 14:17:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-27 14:17:03] Further information can be found at the LHC@home message board.
[2026-04-27 14:17:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-27 14:17:03] Checking for apptainer binary...
[2026-04-27 14:17:03] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-27 14:17:03] Running /usr/bin/apptainer --version
[2026-04-27 14:17:03] apptainer version 1.4.1-1.1
[2026-04-27 14:17:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-27 14:17:03] cosA125
[2026-04-27 14:17:03] apptainer works
[2026-04-27 14:17:03] Set ATHENA_PROC_NUMBER=3
[2026-04-27 14:17:03] Set ATHENA_CORE_NUMBER=3
[2026-04-27 14:17:03] Starting ATLAS job with PandaID=7116191320
[2026-04-27 14:17:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-27 16:44:30]  *** The last 200 lines of the pilot log: ***
[2026-04-27 16:44:30] 2026-04-27 14:44:00,024 | INFO     | collected zombie processes
[2026-04-27 16:44:30] 2026-04-27 14:44:00,024 | INFO     | will attempt to kill all subprocesses of pid=263862
[2026-04-27 16:44:30] 2026-04-27 14:44:00,056 | INFO     | process IDs to be killed: [263862] (in reverse order)
[2026-04-27 16:44:30] 2026-04-27 14:44:00,080 | WARNING  | found no corresponding commands to process id(s)
[2026-04-27 16:44:30] 2026-04-27 14:44:00,081 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-27 16:44:30] 2026-04-27 14:44:00,082 | INFO     | did not find any defunct processes belonging to 263862
[2026-04-27 16:44:30] 2026-04-27 14:44:00,083 | INFO     | did not find any defunct processes belonging to 263862
[2026-04-27 16:44:30] 2026-04-27 14:44:00,083 | INFO     | Ready for new job
[2026-04-27 16:44:30] 2026-04-27 14:44:00,084 | INFO     | ***************************************
[2026-04-27 16:44:30] 2026-04-27 14:44:00,084 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-27 16:44:30] 2026-04-27 14:44:00,084 | INFO     | ***************************************
[2026-04-27 16:44:30] 2026-04-27 14:44:00,084 | INFO     | 
[2026-04-27 16:44:30] 2026-04-27 14:44:00,084 | INFO     | architecture information:
[2026-04-27 16:44:30] 2026-04-27 14:44:00,084 | INFO     | executing command: cat /etc/os-release
[2026-04-27 16:44:30] 2026-04-27 14:44:00,093 | INFO     | cat /etc/os-release:
[2026-04-27 16:44:30] NAME="CentOS Linux"
[2026-04-27 16:44:30] VERSION="7 (Core)"
[2026-04-27 16:44:30] ID="centos"
[2026-04-27 16:44:30] ID_LIKE="rhel fedora"
[2026-04-27 16:44:30] VERSION_ID="7"
[2026-04-27 16:44:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-27 16:44:30] ANSI_COLOR="0;31"
[2026-04-27 16:44:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-27 16:44:30] HOME_URL="https://www.centos.org/"
[2026-04-27 16:44:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-27 16:44:30] 
[2026-04-27 16:44:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-27 16:44:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-27 16:44:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-27 16:44:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-27 16:44:30] 
[2026-04-27 16:44:30] 2026-04-27 14:44:00,093 | INFO     | ***************************************
[2026-04-27 16:44:30] 2026-04-27 14:44:00,596 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-27 16:44:30] 2026-04-27 14:44:00,610 | INFO     | sufficient remaining disk space (318952701952 B)
[2026-04-27 16:44:30] 2026-04-27 14:44:00,610 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-27 16:44:30] 2026-04-27 14:44:00,610 | INFO     | current server update state: UPDATING_FINAL
[2026-04-27 16:44:30] 2026-04-27 14:44:00,610 | INFO     | update_server=False
[2026-04-27 16:44:30] 2026-04-27 14:44:00,610 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-27 16:44:30] 2026-04-27 14:44:00,610 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-27 16:44:30] 2026-04-27 14:44:00,610 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-27 16:44:30] 2026-04-27 14:44:00,610 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-04-27 16:44:30] 2026-04-27 14:44:00,610 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-27 16:44:30] 2026-04-27 14:44:00,611 | INFO     | found 0 job(s) in 20 queues
[2026-04-27 16:44:30] 2026-04-27 14:44:00,611 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-27 16:44:30] 2026-04-27 14:44:00,611 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-27 16:44:30] 2026-04-27 14:44:00,947 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-27 16:44:30] 2026-04-27 14:44:00,948 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-27 16:44:30] 2026-04-27 14:44:00,948 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-27 16:44:30] 2026-04-27 14:44:00,948 | INFO     | will abort loop
[2026-04-27 16:44:30] 2026-04-27 14:44:01,336 | INFO     | all payload control threads have been joined
[2026-04-27 16:44:30] 2026-04-27 14:44:01,445 | INFO     | all data control threads have been joined
[2026-04-27 16:44:30] 2026-04-27 14:44:01,616 | INFO     | [job] retrieve thread has finished
[2026-04-27 16:44:30] 2026-04-27 14:44:01,616 | INFO     | [job] queue monitor thread has finished
[2026-04-27 16:44:30] 2026-04-27 14:44:01,639 | INFO     | all job control threads have been joined
[2026-04-27 16:44:30] 2026-04-27 14:44:01,930 | INFO     | [payload] execute_payloads thread has finished
[2026-04-27 16:44:30] 2026-04-27 14:44:01,953 | INFO     | [job] job monitor thread has finished
[2026-04-27 16:44:30] 2026-04-27 14:44:02,264 | INFO     | [payload] validate_post thread has finished
[2026-04-27 16:44:30] 2026-04-27 14:44:02,342 | INFO     | [payload] control thread has finished
[2026-04-27 16:44:30] 2026-04-27 14:44:02,450 | INFO     | [data] control thread has finished
[2026-04-27 16:44:30] 2026-04-27 14:44:02,616 | INFO     | [data] copytool_out thread has finished
[2026-04-27 16:44:30] 2026-04-27 14:44:02,645 | INFO     | [job] control thread has finished
[2026-04-27 16:44:30] 2026-04-27 14:44:02,792 | INFO     | [job] validate thread has finished
[2026-04-27 16:44:30] 2026-04-27 14:44:02,907 | INFO     | [job] create_data_payload thread has finished
[2026-04-27 16:44:30] 2026-04-27 14:44:02,944 | INFO     | [payload] validate_pre thread has finished
[2026-04-27 16:44:30] 2026-04-27 14:44:03,084 | INFO     | [data] copytool_in thread has finished
[2026-04-27 16:44:30] 2026-04-27 14:44:03,104 | INFO     | [payload] failed_post thread has finished
[2026-04-27 16:44:30] 2026-04-27 14:44:04,617 | INFO     | [data] queue_monitor thread has finished
[2026-04-27 16:44:30] 2026-04-27 14:44:10,772 | INFO     | job.realtimelogging is not enabled
[2026-04-27 16:44:30] 2026-04-27 14:44:11,778 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-27 16:44:30] 2026-04-27 14:44:23,372 | INFO     | [monitor] cgroup control has ended
[2026-04-27 16:44:30] 2026-04-27 14:44:25,057 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140035619981120)>', '<ExcThread(monitor, started 140034791438080)>']
[2026-04-27 16:44:30] 2026-04-27 14:44:25,743 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-27 16:44:30] 2026-04-27 14:44:25,743 | INFO     | [monitor] control thread has ended
[2026-04-27 16:44:30] 2026-04-27 14:44:30,069 | INFO     | all workflow threads have been joined
[2026-04-27 16:44:30] 2026-04-27 14:44:30,070 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-27 16:44:30] 2026-04-27 14:44:30,071 | INFO     | traces error code: 0
[2026-04-27 16:44:30] 2026-04-27 14:44:30,071 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-27 16:44:30] 2026-04-27 14:44:30,121 [wrapper] ==== pilot stdout END ====
[2026-04-27 16:44:30] 2026-04-27 14:44:30,123 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-27 16:44:30] 2026-04-27 14:44:30,126 [wrapper] pilotpid: 259441
[2026-04-27 16:44:30] 2026-04-27 14:44:30,128 [wrapper] Pilot exit status: 0
[2026-04-27 16:44:30] 2026-04-27 14:44:30,135 [wrapper] pandaids: 7116191320
[2026-04-27 16:44:30] 2026-04-27 14:44:30,151 [wrapper] cleanup supervisor_pilot  270074 259442
[2026-04-27 16:44:30] 2026-04-27 14:44:30,153 [wrapper] Test setup, not cleaning
[2026-04-27 16:44:30] 2026-04-27 14:44:30,156 [wrapper] apfmon messages muted
[2026-04-27 16:44:30] 2026-04-27 14:44:30,158 [wrapper] ==== wrapper stdout END ====
[2026-04-27 16:44:30] 2026-04-27 14:44:30,160 [wrapper] ==== wrapper stderr END ====
[2026-04-27 16:44:30]  *** Error codes and diagnostics ***
[2026-04-27 16:44:30]     "exeErrorCode": 0,
[2026-04-27 16:44:30]     "pilotErrorCode": 0,
[2026-04-27 16:44:30]  *** Listing of results directory ***
[2026-04-27 16:44:30] total 2432420
[2026-04-27 16:44:30] -rw-r--r-- 1 boinc boinc     683926 Apr 27 00:33 pilot3.tar.gz
[2026-04-27 16:44:30] -rwx------ 1 boinc boinc      36322 Apr 27 00:37 runpilot2-wrapper.sh
[2026-04-27 16:44:30] -rw-r--r-- 1 boinc boinc       5631 Apr 27 00:42 queuedata.json
[2026-04-27 16:44:30] -rw-r--r-- 1 boinc boinc        100 Apr 27 14:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-27 16:44:30] -rwxr-xr-x 1 boinc boinc       7986 Apr 27 14:17 run_atlas
[2026-04-27 16:44:30] -rw-r--r-- 1 boinc boinc        105 Apr 27 14:17 job.xml
[2026-04-27 16:44:30] -rw-r--r-- 2 boinc boinc 2211879524 Apr 27 14:17 EVNT.49820373._000037.pool.root.1
[2026-04-27 16:44:30] -rw-r--r-- 2 boinc boinc     697428 Apr 27 14:17 input.tar.gz
[2026-04-27 16:44:30] -rw-r--r-- 2 boinc boinc      15667 Apr 27 14:17 start_atlas.sh
[2026-04-27 16:44:30] drwxrwx--x 2 boinc boinc       4096 Apr 27 14:17 shared
[2026-04-27 16:44:30] -rw-r--r-- 1 boinc boinc          0 Apr 27 14:17 boinc_setup_complete
[2026-04-27 16:44:30] -rw-r--r-- 1 boinc boinc       6356 Apr 27 14:17 init_data.xml
[2026-04-27 16:44:30] -rw-r--r-- 1 boinc boinc          0 Apr 27 14:17 boinc_lockfile
[2026-04-27 16:44:30] -rw-r--r-- 1 boinc boinc       2584 Apr 27 14:17 pandaJob.out
[2026-04-27 16:44:30] -rw------- 1 boinc boinc     996913 Apr 27 14:17 agis_schedconf.cvmfs.json
[2026-04-27 16:44:30] -rw------- 1 boinc boinc    1510700 Apr 27 14:17 agis_ddmendpoints.agis.ALL.json
[2026-04-27 16:44:30] -rw------- 1 boinc boinc        427 Apr 27 14:17 workernode_map.json
[2026-04-27 16:44:30] drwx------ 5 boinc boinc       4096 Apr 27 14:17 pilot3
[2026-04-27 16:44:30] -rw------- 1 boinc boinc  272377762 Apr 27 16:43 HITS.49820375._015297.pool.root.1
[2026-04-27 16:44:30] -rw-r--r-- 1 boinc boinc        488 Apr 27 16:43 boinc_task_state.xml
[2026-04-27 16:44:30] -rw------- 1 boinc boinc       1023 Apr 27 16:43 memory_monitor_summary.json
[2026-04-27 16:44:30] -rw------- 1 boinc boinc         95 Apr 27 16:43 pilot_heartbeat.json
[2026-04-27 16:44:30] -rw------- 1 boinc boinc     383091 Apr 27 16:43 log.49820375._015297.job.log.tgz.1
[2026-04-27 16:44:30] -rw------- 1 boinc boinc       6340 Apr 27 16:43 heartbeat_new.json
[2026-04-27 16:44:30] -rw------- 1 boinc boinc       6231 Apr 27 16:43 heartbeat.json
[2026-04-27 16:44:30] -rw-r--r-- 1 boinc boinc       8192 Apr 27 16:44 boinc_mmap_file
[2026-04-27 16:44:30] -rw-r--r-- 1 boinc boinc         27 Apr 27 16:44 wrapper_checkpoint.txt
[2026-04-27 16:44:30] -rw------- 1 boinc boinc       4813 Apr 27 16:44 pilotlog.txt
[2026-04-27 16:44:30] -rw------- 1 boinc boinc     827316 Apr 27 16:44 log.49820375._015297.job.log.1
[2026-04-27 16:44:30] -rw------- 1 boinc boinc        357 Apr 27 16:44 output.list
[2026-04-27 16:44:30] -rw-r--r-- 1 boinc boinc        410 Apr 27 16:44 runtime_log
[2026-04-27 16:44:30] -rw------- 1 boinc boinc    1228800 Apr 27 16:44 result.tar.gz
[2026-04-27 16:44:30] -rw-r--r-- 1 boinc boinc       8524 Apr 27 16:44 runtime_log.err
[2026-04-27 16:44:30] -rw------- 1 boinc boinc        659 Apr 27 16:44 9399da9ef214.diag
[2026-04-27 16:44:30] -rw-r--r-- 1 boinc boinc      10302 Apr 27 16:44 stderr.txt
[2026-04-27 16:44:30] HITS file was successfully produced:
[2026-04-27 16:44:30] -rw------- 1 boinc boinc 272377762 Apr 27 16:43 shared/HITS.pool.root.1
[2026-04-27 16:44:30]  *** Contents of shared directory: ***
[2026-04-27 16:44:30] total 2427944
[2026-04-27 16:44:30] -rw-r--r-- 2 boinc boinc 2211879524 Apr 27 14:17 ATLAS.root_0
[2026-04-27 16:44:30] -rw-r--r-- 2 boinc boinc     697428 Apr 27 14:17 input.tar.gz
[2026-04-27 16:44:30] -rw-r--r-- 2 boinc boinc      15667 Apr 27 14:17 start_atlas.sh
[2026-04-27 16:44:30] -rw------- 1 boinc boinc  272377762 Apr 27 16:43 HITS.pool.root.1
[2026-04-27 16:44:30] -rw------- 1 boinc boinc    1228800 Apr 27 16:44 result.tar.gz
16:44:32 (255397): run_atlas exited; CPU time 24994.243906
16:44:32 (255397): called boinc_finish(0)

</stderr_txt>
]]>

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