Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:06:09 (47189): wrapper (7.7.26015): starting
02:06:09 (47189): wrapper: running run_atlas (--nthreads 12)
[2026-04-28 02:06:09] Arguments: --nthreads 12
[2026-04-28 02:06:09] Threads: 12
[2026-04-28 02:06:09] Checking for CVMFS
[2026-04-28 02:06:09] No cvmfs_config command found, will try listing directly
[2026-04-28 02:06:09] CVMFS is ok
[2026-04-28 02:06:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-28 02:06:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-28 02:06:09] Further information can be found at the LHC@home message board.
[2026-04-28 02:06:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-28 02:06:09] Checking for apptainer binary...
[2026-04-28 02:06:09] which: no apptainer in ((null))
[2026-04-28 02:06:09] apptainer is not installed, using version from CVMFS
[2026-04-28 02:06:09] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-28 02:06:10] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot228/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut29.grid.cesnet.cz
[2026-04-28 02:06:10] apptainer works
[2026-04-28 02:06:10] Set ATHENA_PROC_NUMBER=12
[2026-04-28 02:06:10] Set ATHENA_CORE_NUMBER=12
[2026-04-28 02:06:10] Starting ATLAS job with PandaID=7116199205
[2026-04-28 02:06:10] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot228/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-28 02:55:48]  *** The last 200 lines of the pilot log: ***
[2026-04-28 02:55:48]  filetype=log
[2026-04-28 02:55:48]  guid=6667bfd7-76ab-44cb-b513-cea45bb92706
[2026-04-28 02:55:48]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-04-28 02:55:48]  is_altstaged=None
[2026-04-28 02:55:48]  is_tar=False
[2026-04-28 02:55:48]  lfn=log.49820244._018558.job.log.tgz.1
[2026-04-28 02:55:48]  mtime=0
[2026-04-28 02:55:48]  protocol_id=None
[2026-04-28 02:55:48]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-28 02:55:48]  replicas=None
[2026-04-28 02:55:48]  scope=mc23_13p6TeV
[2026-04-28 02:55:48]  status=None
[2026-04-28 02:55:48]  status_code=0
[2026-04-28 02:55:48]  storage_token=
[2026-04-28 02:55:48]  surl=/var/lib/boinc/var/slot228/slots/1/PanDA_Pilot-7116199205/log.49820244._018558.job.log.tgz.1
[2026-04-28 02:55:48]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/89/18/log.49820244._018558.job.log.tgz.1
[2026-04-28 02:55:48]  workdir=None
[2026-04-28 02:55:48] ]
[2026-04-28 02:55:48] 2026-04-28 00:54:37,612 | INFO     | transferring file log.49820244._018558.job.log.tgz.1 from /var/lib/boinc/var/slot228/slots/1/PanDA_Pilot-7116199205/log.49820244._018558.job.log.tgz.1 to /var/lib/
[2026-04-28 02:55:48] 2026-04-28 00:54:37,613 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot228/slots/1/PanDA_Pilot-7116199205/log.49820244._018558.job.log.tgz.1 /var/lib/boinc/var/slot228/slots/1/
[2026-04-28 02:55:48] 2026-04-28 00:54:37,628 | INFO     | adding to output.list: log.49820244._018558.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/89/18/log.49820244._018558.job.log.tg
[2026-04-28 02:55:48] 2026-04-28 00:54:37,628 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-28 02:55:48] 2026-04-28 00:54:37,629 | INFO     | summary of transferred files:
[2026-04-28 02:55:48] 2026-04-28 00:54:37,629 | INFO     |  -- lfn=log.49820244._018558.job.log.tgz.1, status_code=0, status=transferred
[2026-04-28 02:55:48] 2026-04-28 00:54:37,629 | INFO     | stage-out finished correctly
[2026-04-28 02:55:48] 2026-04-28 00:54:40,197 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-28 02:55:48] 2026-04-28 00:54:40,652 | INFO     | job 7116199205 has state=finished
[2026-04-28 02:55:48] 2026-04-28 00:54:40,653 | INFO     | preparing for final server update for job 7116199205 in state='finished'
[2026-04-28 02:55:48] 2026-04-28 00:54:40,653 | INFO     | reading metadata from: /var/lib/boinc/var/slot228/slots/1/PanDA_Pilot-7116199205/jobReport.json
[2026-04-28 02:55:48] 2026-04-28 00:54:40,654 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot228/slots/1/workernode_map.json
[2026-04-28 02:55:48] 2026-04-28 00:54:40,655 | INFO     | this job has now completed (state=finished)
[2026-04-28 02:55:48] 2026-04-28 00:54:40,655 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-28 02:55:48] 2026-04-28 00:54:40,655 | INFO     | log transfer has been attempted: DONE
[2026-04-28 02:55:48] 2026-04-28 00:54:40,655 | INFO     | job 7116199205 has finished - writing final server update
[2026-04-28 02:55:48] 2026-04-28 00:54:40,655 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2146769/.job.ad'
[2026-04-28 02:55:48] 2026-04-28 00:54:40,655 | INFO     | total number of processed events: 400 (read)
[2026-04-28 02:55:48] 2026-04-28 00:54:40,673 | INFO     | using path: /var/lib/boinc/var/slot228/slots/1/PanDA_Pilot-7116199205/memory_monitor_summary.json (trf name=prmon)
[2026-04-28 02:55:48] 2026-04-28 00:54:40,673 | INFO     | extracted standard info from prmon json
[2026-04-28 02:55:48] 2026-04-28 00:54:40,673 | INFO     | extracted standard memory fields from prmon json
[2026-04-28 02:55:48] 2026-04-28 00:54:40,673 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-28 02:55:48] 2026-04-28 00:54:40,673 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-28 02:55:48] 2026-04-28 00:54:40,674 | INFO     | fitting pss+swap vs Time
[2026-04-28 02:55:48] 2026-04-28 00:54:40,674 | INFO     | sum of square deviations: 21358540.0
[2026-04-28 02:55:48] 2026-04-28 00:54:40,674 | INFO     | sum of deviations: 196369247.99999997
[2026-04-28 02:55:48] 2026-04-28 00:54:40,674 | INFO     | mean x (centered): 0.0
[2026-04-28 02:55:48] 2026-04-28 00:54:40,674 | INFO     | mean y: 2761128.6585365855
[2026-04-28 02:55:48] 2026-04-28 00:54:40,674 | INFO     | intersect: 2761128.6585365855
[2026-04-28 02:55:48] 2026-04-28 00:54:40,675 | INFO     | chi2: 0.00017332682537982442
[2026-04-28 02:55:48] 2026-04-28 00:54:40,675 | INFO     | current memory leak: 9.19 B/s (using 41 data points, chi2=0.00)
[2026-04-28 02:55:48] 2026-04-28 00:54:40,675 | INFO     | could have reported an average CPU frequency of 3604 MHz (5 samples)
[2026-04-28 02:55:48] 2026-04-28 00:54:40,675 | INFO     | ..............................
[2026-04-28 02:55:48] 2026-04-28 00:54:40,675 | INFO     | . Timing measurements:
[2026-04-28 02:55:48] 2026-04-28 00:54:40,675 | INFO     | . get job = 0 s
[2026-04-28 02:55:48] 2026-04-28 00:54:40,675 | INFO     | . initial setup = 4 s
[2026-04-28 02:55:48] 2026-04-28 00:54:40,675 | INFO     | . payload setup = 6 s
[2026-04-28 02:55:48] 2026-04-28 00:54:40,675 | INFO     | . stage-in = 0 s
[2026-04-28 02:55:48] 2026-04-28 00:54:40,675 | INFO     | . payload execution = 2875 s
[2026-04-28 02:55:48] 2026-04-28 00:54:40,675 | INFO     | . stage-out = 0 s
[2026-04-28 02:55:48] 2026-04-28 00:54:40,675 | INFO     | . log creation = 0 s
[2026-04-28 02:55:48] 2026-04-28 00:54:40,675 | INFO     | ..............................
[2026-04-28 02:55:48] 2026-04-28 00:54:40,725 | INFO     | 
[2026-04-28 02:55:48] 2026-04-28 00:54:40,725 | INFO     | job summary report
[2026-04-28 02:55:48] 2026-04-28 00:54:40,725 | INFO     | --------------------------------------------------
[2026-04-28 02:55:48] 2026-04-28 00:54:40,725 | INFO     | PanDA job id: 7116199205
[2026-04-28 02:55:48] 2026-04-28 00:54:40,725 | INFO     | task id: 49820244
[2026-04-28 02:55:48] 2026-04-28 00:54:40,725 | INFO     | errors: (none)
[2026-04-28 02:55:48] 2026-04-28 00:54:40,725 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-28 02:55:48] 2026-04-28 00:54:40,725 | INFO     | pilot state: finished 
[2026-04-28 02:55:48] 2026-04-28 00:54:40,725 | INFO     | transexitcode: 0
[2026-04-28 02:55:48] 2026-04-28 00:54:40,725 | INFO     | exeerrorcode: 0
[2026-04-28 02:55:48] 2026-04-28 00:54:40,725 | INFO     | exeerrordiag: 
[2026-04-28 02:55:48] 2026-04-28 00:54:40,725 | INFO     | exitcode: 0
[2026-04-28 02:55:48] 2026-04-28 00:54:40,725 | INFO     | exitmsg: OK
[2026-04-28 02:55:48] 2026-04-28 00:54:40,726 | INFO     | cpuconsumptiontime: 31697 s
[2026-04-28 02:55:48] 2026-04-28 00:54:40,726 | INFO     | nevents: 400
[2026-04-28 02:55:48] 2026-04-28 00:54:40,726 | INFO     | neventsw: 0
[2026-04-28 02:55:48] 2026-04-28 00:54:40,726 | INFO     | pid: 57479
[2026-04-28 02:55:48] 2026-04-28 00:54:40,726 | INFO     | pgrp: 57479
[2026-04-28 02:55:48] 2026-04-28 00:54:40,726 | INFO     | corecount: 12
[2026-04-28 02:55:48] 2026-04-28 00:54:40,726 | INFO     | event service: False
[2026-04-28 02:55:48] 2026-04-28 00:54:40,726 | INFO     | sizes: {0: 2280859, 1: 2282489, 11: 2282517, 2885: 2316943, 2888: 2317169}
[2026-04-28 02:55:48] 2026-04-28 00:54:40,726 | INFO     | --------------------------------------------------
[2026-04-28 02:55:48] 2026-04-28 00:54:40,726 | INFO     | 
[2026-04-28 02:55:48] 2026-04-28 00:54:40,726 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot228/slots/1
[2026-04-28 02:55:48] 2026-04-28 00:54:40,745 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-28 02:55:48] 2026-04-28 00:54:40,745 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-28 02:55:48] 2026-04-28 00:54:40,745 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-28 02:55:48] 2026-04-28 00:54:40,745 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-28 02:55:48] 2026-04-28 00:54:40,746 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-28 02:55:48] 2026-04-28 00:54:40,746 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-28 02:55:48] 2026-04-28 00:54:40,746 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-28 02:55:48] 2026-04-28 00:54:40,746 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-28 02:55:48] 2026-04-28 00:54:40,746 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-28 02:55:48] 2026-04-28 00:54:40,746 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-28 02:55:48] 2026-04-28 00:54:40,746 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-28 02:55:48] 2026-04-28 00:54:40,746 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-28 02:55:48] 2026-04-28 00:54:40,746 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-28 02:55:48] 2026-04-28 00:54:40,746 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-28 02:55:48] 2026-04-28 00:54:40,746 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-28 02:55:48] 2026-04-28 00:54:40,746 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-28 02:55:48] 2026-04-28 00:54:40,746 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-28 02:55:48] 2026-04-28 00:54:40,746 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-28 02:55:48] 2026-04-28 00:54:40,746 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-28 02:55:48] 2026-04-28 00:54:40,746 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-28 02:55:48] 2026-04-28 00:54:40,746 | INFO     | job 7116199205 has completed (purged errors)
[2026-04-28 02:55:48] 2026-04-28 00:54:40,746 | INFO     | overall cleanup function is called
[2026-04-28 02:55:48] 2026-04-28 00:54:41,753 | INFO     | --- collectZombieJob: --- 10, [57479]
[2026-04-28 02:55:48] 2026-04-28 00:54:41,754 | INFO     | zombie collector waiting for pid 57479
[2026-04-28 02:55:48] 2026-04-28 00:54:41,754 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-28 02:55:48] 2026-04-28 00:54:41,754 | INFO     | collected zombie processes
[2026-04-28 02:55:48] 2026-04-28 00:54:41,754 | INFO     | will attempt to kill all subprocesses of pid=57479
[2026-04-28 02:55:48] 2026-04-28 00:54:42,071 | INFO     | process IDs to be killed: [57479] (in reverse order)
[2026-04-28 02:55:48] 2026-04-28 00:54:42,219 | WARNING  | found no corresponding commands to process id(s)
[2026-04-28 02:55:48] 2026-04-28 00:54:42,219 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-28 02:55:48] 2026-04-28 00:54:42,243 | INFO     | did not find any defunct processes belonging to 57479
[2026-04-28 02:55:48] 2026-04-28 00:54:42,265 | INFO     | did not find any defunct processes belonging to 57479
[2026-04-28 02:55:48] 2026-04-28 00:54:42,265 | INFO     | Ready for new job
[2026-04-28 02:55:48] 2026-04-28 00:54:42,266 | INFO     | ***************************************
[2026-04-28 02:55:48] 2026-04-28 00:54:42,266 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-28 02:55:48] 2026-04-28 00:54:42,267 | INFO     | ***************************************
[2026-04-28 02:55:48] 2026-04-28 00:54:42,267 | INFO     | 
[2026-04-28 02:55:48] 2026-04-28 00:54:42,273 | INFO     | architecture information:
[2026-04-28 02:55:48] 2026-04-28 00:54:42,273 | INFO     | executing command: cat /etc/os-release
[2026-04-28 02:55:48] 2026-04-28 00:54:42,287 | INFO     | cat /etc/os-release:
[2026-04-28 02:55:48] NAME="CentOS Linux"
[2026-04-28 02:55:48] VERSION="7 (Core)"
[2026-04-28 02:55:48] ID="centos"
[2026-04-28 02:55:48] ID_LIKE="rhel fedora"
[2026-04-28 02:55:48] VERSION_ID="7"
[2026-04-28 02:55:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-28 02:55:48] ANSI_COLOR="0;31"
[2026-04-28 02:55:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-28 02:55:48] HOME_URL="https://www.centos.org/"
[2026-04-28 02:55:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-28 02:55:48] 
[2026-04-28 02:55:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-28 02:55:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-28 02:55:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-28 02:55:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-28 02:55:48] 
[2026-04-28 02:55:48] 2026-04-28 00:54:42,288 | INFO     | ***************************************
[2026-04-28 02:55:48] 2026-04-28 00:54:42,791 | INFO     | executing command: df -mP /var/lib/boinc/var/slot228/slots/1
[2026-04-28 02:55:48] 2026-04-28 00:54:42,810 | INFO     | sufficient remaining disk space (18172870656 B)
[2026-04-28 02:55:48] 2026-04-28 00:54:42,810 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-28 02:55:48] 2026-04-28 00:54:42,810 | INFO     | current server update state: UPDATING_FINAL
[2026-04-28 02:55:48] 2026-04-28 00:54:42,810 | INFO     | update_server=False
[2026-04-28 02:55:48] 2026-04-28 00:54:42,810 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-28 02:55:48] 2026-04-28 00:54:43,003 | INFO     | all data control threads have been joined
[2026-04-28 02:55:48] 2026-04-28 00:54:43,117 | WARNING  | process 57479 can no longer be monitored (due to stat problems) - aborting
[2026-04-28 02:55:48] 2026-04-28 00:54:43,198 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-28 02:55:48] 2026-04-28 00:54:43,209 | INFO     | all payload control threads have been joined
[2026-04-28 02:55:48] 2026-04-28 00:54:43,392 | INFO     | using path: /var/lib/boinc/var/slot228/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-04-28 02:55:48] 2026-04-28 00:54:43,584 | INFO     | all job control threads have been joined
[2026-04-28 02:55:48] 2026-04-28 00:54:43,692 | INFO     | number of running child processes to parent process 57479: 1
[2026-04-28 02:55:48] 2026-04-28 00:54:43,692 | INFO     | maximum number of monitored processes: 6
[2026-04-28 02:55:48] 2026-04-28 00:54:43,692 | INFO     | aborting job monitoring since job object (job id=7116199205) has expired
[2026-04-28 02:55:48] 2026-04-28 00:54:43,692 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-28 02:55:48] 2026-04-28 00:54:43,692 | INFO     | will abort loop
[2026-04-28 02:55:48] 2026-04-28 00:54:43,816 | INFO     | [job] retrieve thread has finished
[2026-04-28 02:55:48] 2026-04-28 00:54:43,910 | INFO     | [data] copytool_in thread has finished
[2026-04-28 02:55:48] 2026-04-28 00:54:43,913 | INFO     | [payload] validate_pre thread has finished
[2026-04-28 02:55:48] 2026-04-28 00:54:44,009 | INFO     | [data] control thread has finished
[2026-04-28 02:55:48] 2026-04-28 00:54:44,052 | INFO     | [payload] execute_payloads thread has finished
[2026-04-28 02:55:48] 2026-04-28 00:54:44,213 | INFO     | [payload] control thread has finished
[2026-04-28 02:55:48] 2026-04-28 00:54:44,488 | INFO     | [payload] validate_post thread has finished
[2026-04-28 02:55:48] 2026-04-28 00:54:44,591 | INFO     | [job] control thread has finished
[2026-04-28 02:55:48] 2026-04-28 00:54:44,698 | INFO     | [job] job monitor thread has finished
[2026-04-28 02:55:48] 2026-04-28 00:54:45,079 | INFO     | [payload] failed_post thread has finished
[2026-04-28 02:55:48] 2026-04-28 00:54:45,111 | INFO     | [job] validate thread has finished
[2026-04-28 02:55:48] 2026-04-28 00:54:45,149 | INFO     | [job] create_data_payload thread has finished
[2026-04-28 02:55:48] 2026-04-28 00:54:45,205 | INFO     | [data] copytool_out thread has finished
[2026-04-28 02:55:48] 2026-04-28 00:54:45,735 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-28 02:55:48] 2026-04-28 00:54:46,257 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-28 02:55:48] 2026-04-28 00:54:46,741 | INFO     | [job] queue monitor thread has finished
[2026-04-28 02:55:48] 2026-04-28 00:54:50,261 | INFO     | [data] queue_monitor thread has finished
[2026-04-28 02:55:48] 2026-04-28 00:54:52,866 | INFO     | job.realtimelogging is not enabled
[2026-04-28 02:55:48] 2026-04-28 00:54:53,872 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-28 02:55:48] 2026-04-28 00:55:14,017 | INFO     | PID=51711 has CPU usage=8.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-28 02:55:48] 2026-04-28 00:55:14,017 | INFO     | .. there are 15 such processes running
[2026-04-28 02:55:48] 2026-04-28 00:55:14,017 | INFO     | found 0 job(s) in 20 queues
[2026-04-28 02:55:48] 2026-04-28 00:55:14,018 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-28 02:55:48] 2026-04-28 00:55:14,018 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-28 02:55:48] 2026-04-28 00:55:25,394 | INFO     | [monitor] cgroup control has ended
[2026-04-28 02:55:48] 2026-04-28 00:55:26,138 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22616658646848)>', '<ExcThread(monitor, started 22616347748096)>']
[2026-04-28 02:55:48] 2026-04-28 00:55:27,079 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-28 02:55:48] 2026-04-28 00:55:27,080 | INFO     | [monitor] control thread has ended
[2026-04-28 02:55:48] 2026-04-28 00:55:31,164 | INFO     | all workflow threads have been joined
[2026-04-28 02:55:48] 2026-04-28 00:55:31,164 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-28 02:55:48] 2026-04-28 00:55:31,164 | INFO     | traces error code: 0
[2026-04-28 02:55:48] 2026-04-28 00:55:31,164 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-28 02:55:48] 2026-04-28 00:55:31,282 [wrapper] ==== pilot stdout END ====
[2026-04-28 02:55:48] 2026-04-28 00:55:31,285 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-28 02:55:48] 2026-04-28 00:55:31,287 [wrapper] pilotpid: 51711
[2026-04-28 02:55:48] 2026-04-28 00:55:31,289 [wrapper] Pilot exit status: 0
[2026-04-28 02:55:48] 2026-04-28 00:55:31,297 [wrapper] pandaids: 7116199205
[2026-04-28 02:55:48] 2026-04-28 00:55:31,411 [wrapper] cleanup supervisor_pilot  277328 51712
[2026-04-28 02:55:48] 2026-04-28 00:55:31,414 [wrapper] Test setup, not cleaning
[2026-04-28 02:55:48] 2026-04-28 00:55:31,417 [wrapper] apfmon messages muted
[2026-04-28 02:55:48] 2026-04-28 00:55:31,419 [wrapper] ==== wrapper stdout END ====
[2026-04-28 02:55:48] 2026-04-28 00:55:31,421 [wrapper] ==== wrapper stderr END ====
[2026-04-28 02:55:48]  *** Error codes and diagnostics ***
[2026-04-28 02:55:48]     "exeErrorCode": 0,
[2026-04-28 02:55:48]     "pilotErrorCode": 0,
[2026-04-28 02:55:48]  *** Listing of results directory ***
[2026-04-28 02:55:48] total 2479688
[2026-04-28 02:55:48] -rw-r--r--. 1 boinc boinc     683926 Apr 27 00:33 pilot3.tar.gz
[2026-04-28 02:55:48] -rwx------. 1 boinc boinc      36322 Apr 27 00:35 runpilot2-wrapper.sh
[2026-04-28 02:55:48] -rw-r--r--. 1 boinc boinc       5631 Apr 27 00:36 queuedata.json
[2026-04-28 02:55:48] -rw-r--r--. 1 boinc boinc        100 Apr 28 02:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-28 02:55:48] -rwxr-xr-x. 1 boinc boinc       7986 Apr 28 02:06 run_atlas
[2026-04-28 02:55:48] -rw-r--r--. 1 boinc boinc        105 Apr 28 02:06 job.xml
[2026-04-28 02:55:48] -rw-r--r--. 1 boinc boinc       6630 Apr 28 02:06 init_data.xml
[2026-04-28 02:55:48] -rw-r--r--. 2 boinc boinc 2255848660 Apr 28 02:06 EVNT.49820242._000030.pool.root.1
[2026-04-28 02:55:48] -rw-r--r--. 2 boinc boinc      15667 Apr 28 02:06 start_atlas.sh
[2026-04-28 02:55:48] drwxrwx--x. 2 boinc boinc       4096 Apr 28 02:06 shared
[2026-04-28 02:55:48] -rw-r--r--. 2 boinc boinc     697415 Apr 28 02:06 input.tar.gz
[2026-04-28 02:55:48] -rw-r--r--. 1 boinc boinc          0 Apr 28 02:06 boinc_lockfile
[2026-04-28 02:55:48] -rw-r--r--. 1 boinc boinc       2549 Apr 28 02:06 pandaJob.out
[2026-04-28 02:55:48] -rw-------. 1 boinc boinc     997422 Apr 28 02:06 agis_schedconf.cvmfs.json
[2026-04-28 02:55:48] -rw-------. 1 boinc boinc    1512704 Apr 28 02:06 agis_ddmendpoints.agis.ALL.json
[2026-04-28 02:55:48] -rw-------. 1 boinc boinc        443 Apr 28 02:06 workernode_map.json
[2026-04-28 02:55:48] drwx------. 5 boinc boinc       4096 Apr 28 02:06 pilot3
[2026-04-28 02:55:48] -rw-------. 1 boinc boinc  277837667 Apr 28 02:54 HITS.49820244._018558.pool.root.1
[2026-04-28 02:55:48] -rw-r--r--. 1 boinc boinc        488 Apr 28 02:54 boinc_task_state.xml
[2026-04-28 02:55:48] -rw-------. 1 boinc boinc         95 Apr 28 02:54 pilot_heartbeat.json
[2026-04-28 02:55:48] -rw-------. 1 boinc boinc       1029 Apr 28 02:54 memory_monitor_summary.json
[2026-04-28 02:55:48] -rw-------. 1 boinc boinc     371271 Apr 28 02:54 log.49820244._018558.job.log.tgz.1
[2026-04-28 02:55:48] -rw-------. 1 boinc boinc       6373 Apr 28 02:54 heartbeat_new.json
[2026-04-28 02:55:48] -rw-------. 1 boinc boinc       6264 Apr 28 02:54 heartbeat.json
[2026-04-28 02:55:48] -rw-------. 1 boinc boinc       5432 Apr 28 02:55 pilotlog.txt
[2026-04-28 02:55:48] -rw-------. 1 boinc boinc     314472 Apr 28 02:55 log.49820244._018558.job.log.1
[2026-04-28 02:55:48] -rw-------. 1 boinc boinc        357 Apr 28 02:55 output.list
[2026-04-28 02:55:48] -rw-r--r--. 1 boinc boinc        410 Apr 28 02:55 runtime_log
[2026-04-28 02:55:48] -rw-------. 1 boinc boinc     706560 Apr 28 02:55 result.tar.gz
[2026-04-28 02:55:48] -rw-r--r--. 1 boinc boinc       8846 Apr 28 02:55 runtime_log.err
[2026-04-28 02:55:48] -rw-------. 1 boinc boinc        661 Apr 28 02:55 93137b7fc754.diag
[2026-04-28 02:55:48] -rw-r--r--. 1 boinc boinc         27 Apr 28 02:55 wrapper_checkpoint.txt
[2026-04-28 02:55:48] -rw-r--r--. 1 boinc boinc       8192 Apr 28 02:55 boinc_mmap_file
[2026-04-28 02:55:48] -rw-r--r--. 1 boinc boinc      21072 Apr 28 02:55 stderr.txt
[2026-04-28 02:55:48] HITS file was successfully produced:
[2026-04-28 02:55:48] -rw-------. 1 boinc boinc 277837667 Apr 28 02:54 shared/HITS.pool.root.1
[2026-04-28 02:55:48]  *** Contents of shared directory: ***
[2026-04-28 02:55:48] total 2475708
[2026-04-28 02:55:48] -rw-r--r--. 2 boinc boinc 2255848660 Apr 28 02:06 ATLAS.root_0
[2026-04-28 02:55:48] -rw-r--r--. 2 boinc boinc      15667 Apr 28 02:06 start_atlas.sh
[2026-04-28 02:55:48] -rw-r--r--. 2 boinc boinc     697415 Apr 28 02:06 input.tar.gz
[2026-04-28 02:55:48] -rw-------. 1 boinc boinc  277837667 Apr 28 02:54 HITS.pool.root.1
[2026-04-28 02:55:48] -rw-------. 1 boinc boinc     706560 Apr 28 02:55 result.tar.gz
02:55:49 (47189): run_atlas exited; CPU time 31792.742141
02:55:49 (47189): called boinc_finish(0)

</stderr_txt>
]]>

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