Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:49:42 (1691963): wrapper (7.7.26015): starting
14:49:42 (1691963): wrapper: running run_atlas (--nthreads 3)
[2026-04-27 14:49:42] Arguments: --nthreads 3
[2026-04-27 14:49:42] Threads: 3
[2026-04-27 14:49:42] Checking for CVMFS
[2026-04-27 14:49:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-27 14:49:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-27 14:49:42] Running cvmfs_config stat atlas.cern.ch
[2026-04-27 14:49:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-27 14:49:43] 2.9.2.0 1518226 1363 72756 158927 1 50 35103014 36864000 0 130560 0 665172 99.983 54352 8766 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-27 14:49:43] CVMFS is ok
[2026-04-27 14:49:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-27 14:49:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-27 14:49:43] Further information can be found at the LHC@home message board.
[2026-04-27 14:49:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-27 14:49:43] Checking for apptainer binary...
[2026-04-27 14:49:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-27 14:49:43] Running /usr/bin/apptainer --version
[2026-04-27 14:49:43] apptainer version 1.4.1-1.1
[2026-04-27 14:49:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-27 14:49:43] magicA246
[2026-04-27 14:49:43] apptainer works
[2026-04-27 14:49:43] Set ATHENA_PROC_NUMBER=3
[2026-04-27 14:49:43] Set ATHENA_CORE_NUMBER=3
[2026-04-27 14:49:43] Starting ATLAS job with PandaID=7116190781
[2026-04-27 14:49:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-27 17:17:08]  *** The last 200 lines of the pilot log: ***
[2026-04-27 17:17:08] 2026-04-27 15:16:27,820 | INFO     | did not find any defunct processes belonging to 1700428
[2026-04-27 17:17:08] 2026-04-27 15:16:27,820 | INFO     | Ready for new job
[2026-04-27 17:17:08] 2026-04-27 15:16:27,821 | INFO     | ***************************************
[2026-04-27 17:17:08] 2026-04-27 15:16:27,821 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-27 17:17:08] 2026-04-27 15:16:27,821 | INFO     | ***************************************
[2026-04-27 17:17:08] 2026-04-27 15:16:27,821 | INFO     | 
[2026-04-27 17:17:08] 2026-04-27 15:16:27,822 | INFO     | architecture information:
[2026-04-27 17:17:08] 2026-04-27 15:16:27,822 | INFO     | executing command: cat /etc/os-release
[2026-04-27 17:17:08] 2026-04-27 15:16:27,831 | INFO     | cat /etc/os-release:
[2026-04-27 17:17:08] NAME="CentOS Linux"
[2026-04-27 17:17:08] VERSION="7 (Core)"
[2026-04-27 17:17:08] ID="centos"
[2026-04-27 17:17:08] ID_LIKE="rhel fedora"
[2026-04-27 17:17:08] VERSION_ID="7"
[2026-04-27 17:17:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-27 17:17:08] ANSI_COLOR="0;31"
[2026-04-27 17:17:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-27 17:17:08] HOME_URL="https://www.centos.org/"
[2026-04-27 17:17:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-27 17:17:08] 
[2026-04-27 17:17:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-27 17:17:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-27 17:17:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-27 17:17:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-27 17:17:08] 
[2026-04-27 17:17:08] 2026-04-27 15:16:27,831 | INFO     | ***************************************
[2026-04-27 17:17:08] 2026-04-27 15:16:28,334 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-27 17:17:08] 2026-04-27 15:16:28,347 | INFO     | sufficient remaining disk space (359781105664 B)
[2026-04-27 17:17:08] 2026-04-27 15:16:28,348 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-27 17:17:08] 2026-04-27 15:16:28,348 | INFO     | current server update state: UPDATING_FINAL
[2026-04-27 17:17:08] 2026-04-27 15:16:28,348 | INFO     | update_server=False
[2026-04-27 17:17:08] 2026-04-27 15:16:28,348 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-27 17:17:08] 2026-04-27 15:16:28,348 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-27 17:17:08] 2026-04-27 15:16:28,348 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-27 17:17:08] 2026-04-27 15:16:28,348 | INFO     | aborting loop
[2026-04-27 17:17:08] 2026-04-27 15:16:29,260 | INFO     | all payload control threads have been joined
[2026-04-27 17:17:08] 2026-04-27 15:16:29,354 | INFO     | [job] queue monitor thread has finished
[2026-04-27 17:17:08] 2026-04-27 15:16:29,354 | INFO     | [job] retrieve thread has finished
[2026-04-27 17:17:08] 2026-04-27 15:16:29,354 | INFO     | [job] job monitor thread has finished
[2026-04-27 17:17:08] 2026-04-27 15:16:29,379 | INFO     | all data control threads have been joined
[2026-04-27 17:17:08] 2026-04-27 15:16:29,523 | INFO     | [payload] execute_payloads thread has finished
[2026-04-27 17:17:08] 2026-04-27 15:16:29,594 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-27 17:17:08] 2026-04-27 15:16:29,883 | INFO     | all job control threads have been joined
[2026-04-27 17:17:08] 2026-04-27 15:16:30,058 | INFO     | [payload] failed_post thread has finished
[2026-04-27 17:17:08] 2026-04-27 15:16:30,266 | INFO     | [payload] control thread has finished
[2026-04-27 17:17:08] 2026-04-27 15:16:30,385 | INFO     | [data] control thread has finished
[2026-04-27 17:17:08] 2026-04-27 15:16:30,469 | INFO     | [job] validate thread has finished
[2026-04-27 17:17:08] 2026-04-27 15:16:30,546 | INFO     | [payload] validate_post thread has finished
[2026-04-27 17:17:08] 2026-04-27 15:16:30,614 | INFO     | [payload] validate_pre thread has finished
[2026-04-27 17:17:08] 2026-04-27 15:16:30,618 | INFO     | [job] create_data_payload thread has finished
[2026-04-27 17:17:08] 2026-04-27 15:16:30,771 | INFO     | [data] copytool_in thread has finished
[2026-04-27 17:17:08] 2026-04-27 15:16:30,886 | INFO     | [job] control thread has finished
[2026-04-27 17:17:08] 2026-04-27 15:16:30,970 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-27 17:17:08] 2026-04-27 15:16:31,600 | INFO     | [data] copytool_out thread has finished
[2026-04-27 17:17:08] 2026-04-27 15:16:34,977 | INFO     | [data] queue_monitor thread has finished
[2026-04-27 17:17:08] 2026-04-27 15:16:38,726 | INFO     | job.realtimelogging is not enabled
[2026-04-27 17:17:08] 2026-04-27 15:16:39,732 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-27 17:17:08] 2026-04-27 15:16:58,065 | INFO     | PID=1696002 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-27 17:17:08] 2026-04-27 15:16:58,066 | INFO     | found 0 job(s) in 20 queues
[2026-04-27 17:17:08] 2026-04-27 15:16:58,066 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-27 17:17:08] 2026-04-27 15:16:58,066 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-27 17:17:08] 2026-04-27 15:17:02,946 | INFO     | [monitor] cgroup control has ended
[2026-04-27 17:17:08] 2026-04-27 15:17:03,619 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140598773208896)>', '<ExcThread(monitor, started 140598153565952)>']
[2026-04-27 17:17:08] 2026-04-27 15:17:04,098 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-27 17:17:08] 2026-04-27 15:17:04,098 | INFO     | [monitor] control thread has ended
[2026-04-27 17:17:08] 2026-04-27 15:17:08,644 | INFO     | all workflow threads have been joined
[2026-04-27 17:17:08] 2026-04-27 15:17:08,644 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-27 17:17:08] 2026-04-27 15:17:08,645 | INFO     | traces error code: 0
[2026-04-27 17:17:08] 2026-04-27 15:17:08,645 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-27 17:17:08] 2026-04-27 15:17:08,695 [wrapper] ==== pilot stdout END ====
[2026-04-27 17:17:08] 2026-04-27 15:17:08,698 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-27 17:17:08] 2026-04-27 15:17:08,700 [wrapper] pilotpid: 1696002
[2026-04-27 17:17:08] 2026-04-27 15:17:08,703 [wrapper] Pilot exit status: 0
[2026-04-27 17:17:08] 2026-04-27 15:17:08,710 [wrapper] pandaids: 7116190781
[2026-04-27 17:17:08] 2026-04-27 15:17:08,726 [wrapper] cleanup supervisor_pilot 1706311 1696003
[2026-04-27 17:17:08] 2026-04-27 15:17:08,728 [wrapper] Test setup, not cleaning
[2026-04-27 17:17:08] 2026-04-27 15:17:08,730 [wrapper] apfmon messages muted
[2026-04-27 17:17:08] 2026-04-27 15:17:08,733 [wrapper] ==== wrapper stdout END ====
[2026-04-27 17:17:08] 2026-04-27 15:17:08,735 [wrapper] ==== wrapper stderr END ====
[2026-04-27 17:17:08]  *** Error codes and diagnostics ***
[2026-04-27 17:17:08]     "exeErrorCode": 0,
[2026-04-27 17:17:08]     "pilotErrorCode": 0,
[2026-04-27 17:17:08]  *** Listing of results directory ***
[2026-04-27 17:17:08] total 2467932
[2026-04-27 17:17:08] -rw-r--r-- 1 boinc boinc     687764 Apr 24 15:56 pilot3.tar.gz
[2026-04-27 17:17:08] -rw-r--r-- 1 boinc boinc       5631 Apr 26 23:06 queuedata.json
[2026-04-27 17:17:08] -rwx------ 1 boinc boinc      36322 Apr 26 23:06 runpilot2-wrapper.sh
[2026-04-27 17:17:08] -rw-r--r-- 1 boinc boinc        100 Apr 27 14:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-27 17:17:08] -rwxr-xr-x 1 boinc boinc       7986 Apr 27 14:49 run_atlas
[2026-04-27 17:17:08] -rw-r--r-- 1 boinc boinc        105 Apr 27 14:49 job.xml
[2026-04-27 17:17:08] -rw-r--r-- 2 boinc boinc 2247608693 Apr 27 14:49 EVNT.49820373._000034.pool.root.1
[2026-04-27 17:17:08] -rw-r--r-- 2 boinc boinc     700384 Apr 27 14:49 input.tar.gz
[2026-04-27 17:17:08] -rw-r--r-- 2 boinc boinc      15667 Apr 27 14:49 start_atlas.sh
[2026-04-27 17:17:08] drwxrwx--x 2 boinc boinc       4096 Apr 27 14:49 shared
[2026-04-27 17:17:08] -rw-r--r-- 1 boinc boinc          0 Apr 27 14:49 boinc_setup_complete
[2026-04-27 17:17:08] -rw-r--r-- 1 boinc boinc       6363 Apr 27 14:49 init_data.xml
[2026-04-27 17:17:08] -rw-r--r-- 1 boinc boinc          0 Apr 27 14:49 boinc_lockfile
[2026-04-27 17:17:08] -rw-r--r-- 1 boinc boinc       2584 Apr 27 14:49 pandaJob.out
[2026-04-27 17:17:08] -rw------- 1 boinc boinc     996913 Apr 27 14:49 agis_schedconf.cvmfs.json
[2026-04-27 17:17:08] -rw------- 1 boinc boinc    1508585 Apr 27 14:49 agis_ddmendpoints.agis.ALL.json
[2026-04-27 17:17:08] -rw------- 1 boinc boinc        417 Apr 27 14:49 workernode_map.json
[2026-04-27 17:17:08] drwx------ 5 boinc boinc       4096 Apr 27 14:49 pilot3
[2026-04-27 17:17:08] -rw------- 1 boinc boinc  273059842 Apr 27 17:16 HITS.49820375._014824.pool.root.1
[2026-04-27 17:17:08] -rw-r--r-- 1 boinc boinc        488 Apr 27 17:16 boinc_task_state.xml
[2026-04-27 17:17:08] -rw------- 1 boinc boinc       1020 Apr 27 17:16 memory_monitor_summary.json
[2026-04-27 17:17:08] -rw------- 1 boinc boinc     356118 Apr 27 17:16 log.49820375._014824.job.log.tgz.1
[2026-04-27 17:17:08] -rw------- 1 boinc boinc       6319 Apr 27 17:16 heartbeat_new.json
[2026-04-27 17:17:08] -rw------- 1 boinc boinc       6210 Apr 27 17:16 heartbeat.json
[2026-04-27 17:17:08] -rw------- 1 boinc boinc         95 Apr 27 17:16 pilot_heartbeat.json
[2026-04-27 17:17:08] -rw-r--r-- 1 boinc boinc       8192 Apr 27 17:17 boinc_mmap_file
[2026-04-27 17:17:08] -rw-r--r-- 1 boinc boinc         27 Apr 27 17:17 wrapper_checkpoint.txt
[2026-04-27 17:17:08] -rw------- 1 boinc boinc       4823 Apr 27 17:17 pilotlog.txt
[2026-04-27 17:17:08] -rw------- 1 boinc boinc     827897 Apr 27 17:17 log.49820375._014824.job.log.1
[2026-04-27 17:17:08] -rw------- 1 boinc boinc        357 Apr 27 17:17 output.list
[2026-04-27 17:17:08] -rw-r--r-- 1 boinc boinc        410 Apr 27 17:17 runtime_log
[2026-04-27 17:17:08] -rw------- 1 boinc boinc    1198080 Apr 27 17:17 result.tar.gz
[2026-04-27 17:17:08] -rw-r--r-- 1 boinc boinc       8534 Apr 27 17:17 runtime_log.err
[2026-04-27 17:17:08] -rw------- 1 boinc boinc        661 Apr 27 17:17 7e5ddd2b0940.diag
[2026-04-27 17:17:08] -rw-r--r-- 1 boinc boinc       9519 Apr 27 17:17 stderr.txt
[2026-04-27 17:17:08] HITS file was successfully produced:
[2026-04-27 17:17:08] -rw------- 1 boinc boinc 273059842 Apr 27 17:16 shared/HITS.pool.root.1
[2026-04-27 17:17:08]  *** Contents of shared directory: ***
[2026-04-27 17:17:08] total 2463476
[2026-04-27 17:17:08] -rw-r--r-- 2 boinc boinc 2247608693 Apr 27 14:49 ATLAS.root_0
[2026-04-27 17:17:08] -rw-r--r-- 2 boinc boinc     700384 Apr 27 14:49 input.tar.gz
[2026-04-27 17:17:08] -rw-r--r-- 2 boinc boinc      15667 Apr 27 14:49 start_atlas.sh
[2026-04-27 17:17:08] -rw------- 1 boinc boinc  273059842 Apr 27 17:16 HITS.pool.root.1
[2026-04-27 17:17:08] -rw------- 1 boinc boinc    1198080 Apr 27 17:17 result.tar.gz
17:17:10 (1691963): run_atlas exited; CPU time 24938.421090
17:17:10 (1691963): called boinc_finish(0)

</stderr_txt>
]]>

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