Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:40:26 (161894): wrapper (7.7.26015): starting
20:40:26 (161894): wrapper: running run_atlas (--nthreads 4)
[2026-04-27 20:40:26] Arguments: --nthreads 4
[2026-04-27 20:40:26] Threads: 4
[2026-04-27 20:40:26] Checking for CVMFS
[2026-04-27 20:40:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-27 20:40:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-27 20:40:27] Running cvmfs_config stat atlas.cern.ch
[2026-04-27 20:40:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-27 20:40:27] 2.9.2.0 4129081 1648 83388 158938 2 50 20807283 36864000 0 130560 0 830542 99.983 67546 12205 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-27 20:40:27] CVMFS is ok
[2026-04-27 20:40:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-27 20:40:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-27 20:40:27] Further information can be found at the LHC@home message board.
[2026-04-27 20:40:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-27 20:40:27] Checking for apptainer binary...
[2026-04-27 20:40:27] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-27 20:40:27] Running /usr/bin/apptainer --version
[2026-04-27 20:40:27] apptainer version 1.4.1-1.1
[2026-04-27 20:40:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-27 20:40:27] magicA250
[2026-04-27 20:40:27] apptainer works
[2026-04-27 20:40:27] Set ATHENA_PROC_NUMBER=4
[2026-04-27 20:40:27] Set ATHENA_CORE_NUMBER=4
[2026-04-27 20:40:27] Starting ATLAS job with PandaID=7116207741
[2026-04-27 20:40:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-27 22:50:58]  *** The last 200 lines of the pilot log: ***
[2026-04-27 22:50:58] 2026-04-27 20:50:27,141 | INFO     | collected zombie processes
[2026-04-27 22:50:58] 2026-04-27 20:50:27,141 | INFO     | will attempt to kill all subprocesses of pid=170521
[2026-04-27 22:50:58] 2026-04-27 20:50:27,175 | INFO     | process IDs to be killed: [170521] (in reverse order)
[2026-04-27 22:50:58] 2026-04-27 20:50:27,210 | WARNING  | found no corresponding commands to process id(s)
[2026-04-27 22:50:58] 2026-04-27 20:50:27,210 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-27 22:50:58] 2026-04-27 20:50:27,212 | INFO     | did not find any defunct processes belonging to 170521
[2026-04-27 22:50:58] 2026-04-27 20:50:27,213 | INFO     | did not find any defunct processes belonging to 170521
[2026-04-27 22:50:58] 2026-04-27 20:50:27,213 | INFO     | Ready for new job
[2026-04-27 22:50:58] 2026-04-27 20:50:27,214 | INFO     | ***************************************
[2026-04-27 22:50:58] 2026-04-27 20:50:27,214 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-27 22:50:58] 2026-04-27 20:50:27,214 | INFO     | ***************************************
[2026-04-27 22:50:58] 2026-04-27 20:50:27,214 | INFO     | 
[2026-04-27 22:50:58] 2026-04-27 20:50:27,214 | INFO     | architecture information:
[2026-04-27 22:50:58] 2026-04-27 20:50:27,214 | INFO     | executing command: cat /etc/os-release
[2026-04-27 22:50:58] 2026-04-27 20:50:27,230 | INFO     | cat /etc/os-release:
[2026-04-27 22:50:58] NAME="CentOS Linux"
[2026-04-27 22:50:58] VERSION="7 (Core)"
[2026-04-27 22:50:58] ID="centos"
[2026-04-27 22:50:58] ID_LIKE="rhel fedora"
[2026-04-27 22:50:58] VERSION_ID="7"
[2026-04-27 22:50:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-27 22:50:58] ANSI_COLOR="0;31"
[2026-04-27 22:50:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-27 22:50:58] HOME_URL="https://www.centos.org/"
[2026-04-27 22:50:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-27 22:50:58] 
[2026-04-27 22:50:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-27 22:50:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-27 22:50:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-27 22:50:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-27 22:50:58] 
[2026-04-27 22:50:58] 2026-04-27 20:50:27,230 | INFO     | ***************************************
[2026-04-27 22:50:58] 2026-04-27 20:50:27,733 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-27 22:50:58] 2026-04-27 20:50:27,750 | INFO     | sufficient remaining disk space (331571265536 B)
[2026-04-27 22:50:58] 2026-04-27 20:50:27,751 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-27 22:50:58] 2026-04-27 20:50:27,751 | INFO     | current server update state: UPDATING_FINAL
[2026-04-27 22:50:58] 2026-04-27 20:50:27,751 | INFO     | update_server=False
[2026-04-27 22:50:58] 2026-04-27 20:50:27,751 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-27 22:50:58] 2026-04-27 20:50:27,751 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-27 22:50:58] 2026-04-27 20:50:27,862 | INFO     | all data control threads have been joined
[2026-04-27 22:50:58] 2026-04-27 20:50:28,079 | INFO     | all job control threads have been joined
[2026-04-27 22:50:58] 2026-04-27 20:50:28,481 | INFO     | all payload control threads have been joined
[2026-04-27 22:50:58] 2026-04-27 20:50:28,627 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-27 22:50:58] 2026-04-27 20:50:28,627 | INFO     | aborting loop
[2026-04-27 22:50:58] 2026-04-27 20:50:28,756 | INFO     | [job] retrieve thread has finished
[2026-04-27 22:50:58] 2026-04-27 20:50:28,757 | INFO     | [job] queue monitor thread has finished
[2026-04-27 22:50:58] 2026-04-27 20:50:28,868 | INFO     | [data] control thread has finished
[2026-04-27 22:50:58] 2026-04-27 20:50:29,019 | INFO     | [job] validate thread has finished
[2026-04-27 22:50:58] 2026-04-27 20:50:29,074 | INFO     | [payload] validate_post thread has finished
[2026-04-27 22:50:58] 2026-04-27 20:50:29,085 | INFO     | [job] control thread has finished
[2026-04-27 22:50:58] 2026-04-27 20:50:29,109 | INFO     | [job] create_data_payload thread has finished
[2026-04-27 22:50:58] 2026-04-27 20:50:29,130 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-27 22:50:58] 2026-04-27 20:50:29,214 | INFO     | [payload] validate_pre thread has finished
[2026-04-27 22:50:58] 2026-04-27 20:50:29,399 | INFO     | [data] copytool_in thread has finished
[2026-04-27 22:50:58] 2026-04-27 20:50:29,487 | INFO     | [payload] control thread has finished
[2026-04-27 22:50:58] 2026-04-27 20:50:29,633 | INFO     | [job] job monitor thread has finished
[2026-04-27 22:50:58] 2026-04-27 20:50:29,999 | INFO     | [payload] failed_post thread has finished
[2026-04-27 22:50:58] 2026-04-27 20:50:30,039 | INFO     | [payload] execute_payloads thread has finished
[2026-04-27 22:50:58] 2026-04-27 20:50:30,423 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-27 22:50:58] 2026-04-27 20:50:31,136 | INFO     | [data] copytool_out thread has finished
[2026-04-27 22:50:58] 2026-04-27 20:50:34,431 | INFO     | [data] queue_monitor thread has finished
[2026-04-27 22:50:58] 2026-04-27 20:50:38,745 | INFO     | job.realtimelogging is not enabled
[2026-04-27 22:50:58] 2026-04-27 20:50:39,750 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-27 22:50:58] 2026-04-27 20:50:50,915 | INFO     | [monitor] cgroup control has ended
[2026-04-27 22:50:58] 2026-04-27 20:50:52,510 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140520280590144)>', '<ExcThread(monitor, started 140519434868480)>']
[2026-04-27 22:50:58] 2026-04-27 20:50:57,512 | INFO     | all workflow threads have been joined
[2026-04-27 22:50:58] 2026-04-27 20:50:57,512 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-27 22:50:58] 2026-04-27 20:50:57,513 | INFO     | traces error code: 0
[2026-04-27 22:50:58] 2026-04-27 20:50:57,513 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-27 22:50:58] 2026-04-27 20:50:58,582 | INFO     | PID=166007 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-27 22:50:58] 2026-04-27 20:50:58,582 | INFO     | found 0 job(s) in 20 queues
[2026-04-27 22:50:58] 2026-04-27 20:50:58,582 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-27 22:50:58] 2026-04-27 20:50:58,582 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-27 22:50:58] 2026-04-27 20:50:58,582 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-27 22:50:58] 2026-04-27 20:50:58,582 | INFO     | [monitor] control thread has ended
[2026-04-27 22:50:58] 2026-04-27 20:50:58,658 [wrapper] ==== pilot stdout END ====
[2026-04-27 22:50:58] 2026-04-27 20:50:58,663 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-27 22:50:58] 2026-04-27 20:50:58,668 [wrapper] pilotpid: 166007
[2026-04-27 22:50:58] 2026-04-27 20:50:58,672 [wrapper] Pilot exit status: 0
[2026-04-27 22:50:58] 2026-04-27 20:50:58,685 [wrapper] pandaids: 7116207741
[2026-04-27 22:50:58] 2026-04-27 20:50:58,706 [wrapper] cleanup supervisor_pilot  176732 166008
[2026-04-27 22:50:58] 2026-04-27 20:50:58,711 [wrapper] Test setup, not cleaning
[2026-04-27 22:50:58] 2026-04-27 20:50:58,715 [wrapper] apfmon messages muted
[2026-04-27 22:50:58] 2026-04-27 20:50:58,718 [wrapper] ==== wrapper stdout END ====
[2026-04-27 22:50:58] 2026-04-27 20:50:58,722 [wrapper] ==== wrapper stderr END ====
[2026-04-27 22:50:58]  *** Error codes and diagnostics ***
[2026-04-27 22:50:58]     "exeErrorCode": 0,
[2026-04-27 22:50:58]     "pilotErrorCode": 0,
[2026-04-27 22:50:58]  *** Listing of results directory ***
[2026-04-27 22:50:58] total 2467488
[2026-04-27 22:50:58] -rw-r--r-- 1 boinc boinc     683926 Apr 27 02:46 pilot3.tar.gz
[2026-04-27 22:50:58] -rw-r--r-- 1 boinc boinc       5631 Apr 27 02:47 queuedata.json
[2026-04-27 22:50:58] -rwx------ 1 boinc boinc      36322 Apr 27 02:47 runpilot2-wrapper.sh
[2026-04-27 22:50:58] -rw-r--r-- 1 boinc boinc        100 Apr 27 20:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-27 22:50:58] -rwxr-xr-x 1 boinc boinc       7986 Apr 27 20:40 run_atlas
[2026-04-27 22:50:58] -rw-r--r-- 1 boinc boinc        105 Apr 27 20:40 job.xml
[2026-04-27 22:50:58] -rw-r--r-- 2 boinc boinc 2248572190 Apr 27 20:40 EVNT.49820373._000039.pool.root.1
[2026-04-27 22:50:58] -rw-r--r-- 2 boinc boinc     697425 Apr 27 20:40 input.tar.gz
[2026-04-27 22:50:58] -rw-r--r-- 2 boinc boinc      15667 Apr 27 20:40 start_atlas.sh
[2026-04-27 22:50:58] drwxrwx--x 2 boinc boinc       4096 Apr 27 20:40 shared
[2026-04-27 22:50:58] -rw-r--r-- 1 boinc boinc          0 Apr 27 20:40 boinc_setup_complete
[2026-04-27 22:50:58] -rw-r--r-- 1 boinc boinc       6294 Apr 27 20:40 init_data.xml
[2026-04-27 22:50:58] -rw-r--r-- 1 boinc boinc          0 Apr 27 20:40 boinc_lockfile
[2026-04-27 22:50:58] -rw-r--r-- 1 boinc boinc       2583 Apr 27 20:40 pandaJob.out
[2026-04-27 22:50:58] -rw------- 1 boinc boinc     997763 Apr 27 20:40 agis_schedconf.cvmfs.json
[2026-04-27 22:50:58] -rw------- 1 boinc boinc    1512704 Apr 27 20:40 agis_ddmendpoints.agis.ALL.json
[2026-04-27 22:50:58] -rw------- 1 boinc boinc        423 Apr 27 20:40 workernode_map.json
[2026-04-27 22:50:58] drwx------ 5 boinc boinc       4096 Apr 27 20:40 pilot3
[2026-04-27 22:50:58] -rw------- 1 boinc boinc  271997505 Apr 27 22:49 HITS.49820375._015410.pool.root.1
[2026-04-27 22:50:58] -rw-r--r-- 1 boinc boinc        488 Apr 27 22:50 boinc_task_state.xml
[2026-04-27 22:50:58] -rw------- 1 boinc boinc         95 Apr 27 22:50 pilot_heartbeat.json
[2026-04-27 22:50:58] -rw------- 1 boinc boinc       1021 Apr 27 22:50 memory_monitor_summary.json
[2026-04-27 22:50:58] -rw------- 1 boinc boinc     272168 Apr 27 22:50 log.49820375._015410.job.log.tgz.1
[2026-04-27 22:50:58] -rw------- 1 boinc boinc       6335 Apr 27 22:50 heartbeat_new.json
[2026-04-27 22:50:58] -rw------- 1 boinc boinc       6226 Apr 27 22:50 heartbeat.json
[2026-04-27 22:50:58] -rw-r--r-- 1 boinc boinc       8192 Apr 27 22:50 boinc_mmap_file
[2026-04-27 22:50:58] -rw-r--r-- 1 boinc boinc         27 Apr 27 22:50 wrapper_checkpoint.txt
[2026-04-27 22:50:58] -rw------- 1 boinc boinc        746 Apr 27 22:50 pilotlog.txt
[2026-04-27 22:50:58] -rw------- 1 boinc boinc     737432 Apr 27 22:50 log.49820375._015410.job.log.1
[2026-04-27 22:50:58] -rw------- 1 boinc boinc        357 Apr 27 22:50 output.list
[2026-04-27 22:50:58] -rw-r--r-- 1 boinc boinc        410 Apr 27 22:50 runtime_log
[2026-04-27 22:50:58] -rw------- 1 boinc boinc    1024000 Apr 27 22:50 result.tar.gz
[2026-04-27 22:50:58] -rw-r--r-- 1 boinc boinc       8534 Apr 27 22:50 runtime_log.err
[2026-04-27 22:50:58] -rw------- 1 boinc boinc        661 Apr 27 22:50 b23d5585601a.diag
[2026-04-27 22:50:58] -rw-r--r-- 1 boinc boinc      10153 Apr 27 22:50 stderr.txt
[2026-04-27 22:50:58] HITS file was successfully produced:
[2026-04-27 22:50:58] -rw------- 1 boinc boinc 271997505 Apr 27 22:49 shared/HITS.pool.root.1
[2026-04-27 22:50:58]  *** Contents of shared directory: ***
[2026-04-27 22:50:58] total 2463204
[2026-04-27 22:50:58] -rw-r--r-- 2 boinc boinc 2248572190 Apr 27 20:40 ATLAS.root_0
[2026-04-27 22:50:58] -rw-r--r-- 2 boinc boinc     697425 Apr 27 20:40 input.tar.gz
[2026-04-27 22:50:58] -rw-r--r-- 2 boinc boinc      15667 Apr 27 20:40 start_atlas.sh
[2026-04-27 22:50:58] -rw------- 1 boinc boinc  271997505 Apr 27 22:49 HITS.pool.root.1
[2026-04-27 22:50:58] -rw------- 1 boinc boinc    1024000 Apr 27 22:50 result.tar.gz
22:50:59 (161894): run_atlas exited; CPU time 28990.155943
22:50:59 (161894): called boinc_finish(0)

</stderr_txt>
]]>

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