Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
08:48:47 (16179): wrapper (7.7.26015): starting
08:48:47 (16179): wrapper: running run_atlas (--nthreads 4)
[2026-04-27 08:48:47] Arguments: --nthreads 4
[2026-04-27 08:48:47] Threads: 4
[2026-04-27 08:48:47] Checking for CVMFS
[2026-04-27 08:48:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-27 08:48:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-27 08:48:47] Running cvmfs_config stat atlas.cern.ch
[2026-04-27 08:48:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-27 08:48:48] 2.11.3.0 4789 14 45588 158928 1 186 2478046 4194304 824 130560 0 47838 99.972 1720 58 http://s1unl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.59.5:3128 1
[2026-04-27 08:48:48] CVMFS is ok
[2026-04-27 08:48:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-27 08:48:48] Checking for apptainer binary...
[2026-04-27 08:48:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-27 08:48:48] Running /usr/bin/apptainer --version
[2026-04-27 08:48:48] apptainer version 1.4.5-3.fc42
[2026-04-27 08:48:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-27 08:48:48] R7OwensSE
[2026-04-27 08:48:48] apptainer works
[2026-04-27 08:48:48] Set ATHENA_PROC_NUMBER=4
[2026-04-27 08:48:48] Set ATHENA_CORE_NUMBER=4
[2026-04-27 08:48:48] Starting ATLAS job with PandaID=7116200461
[2026-04-27 08:48:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/data/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-27 13:22:42]  *** The last 200 lines of the pilot log: ***
[2026-04-27 13:22:42] 2026-04-27 18:21:33,552 | INFO     | added worker_node to metadata from /data/boinc/slots/3/workernode_map.json
[2026-04-27 13:22:42] 2026-04-27 18:21:33,552 | INFO     | this job has now completed (state=finished)
[2026-04-27 13:22:42] 2026-04-27 18:21:33,552 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-27 13:22:42] 2026-04-27 18:21:33,552 | INFO     | log transfer has been attempted: DONE
[2026-04-27 13:22:42] 2026-04-27 18:21:33,553 | INFO     | job 7116200461 has finished - writing final server update
[2026-04-27 13:22:42] 2026-04-27 18:21:33,553 | INFO     | total number of processed events: 400 (read)
[2026-04-27 13:22:42] 2026-04-27 18:21:33,555 | INFO     | using path: /data/boinc/slots/3/PanDA_Pilot-7116200461/memory_monitor_summary.json (trf name=prmon)
[2026-04-27 13:22:42] 2026-04-27 18:21:33,556 | INFO     | extracted standard info from prmon json
[2026-04-27 13:22:42] 2026-04-27 18:21:33,556 | INFO     | extracted standard memory fields from prmon json
[2026-04-27 13:22:42] 2026-04-27 18:21:33,556 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-27 13:22:42] 2026-04-27 18:21:33,556 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-27 13:22:42] 2026-04-27 18:21:33,560 | INFO     | fitting pss+swap vs Time
[2026-04-27 13:22:42] 2026-04-27 18:21:33,560 | INFO     | sum of square deviations: 5968658887.0
[2026-04-27 13:22:42] 2026-04-27 18:21:33,562 | INFO     | sum of deviations: -17674466319.499992
[2026-04-27 13:22:42] 2026-04-27 18:21:33,562 | INFO     | mean x (centered): 0.0
[2026-04-27 13:22:42] 2026-04-27 18:21:33,562 | INFO     | mean y: 2389017.1156716417
[2026-04-27 13:22:42] 2026-04-27 18:21:33,562 | INFO     | intersect: 2389017.1156716417
[2026-04-27 13:22:42] 2026-04-27 18:21:33,562 | INFO     | chi2: 2.1637345367509586
[2026-04-27 13:22:42] 2026-04-27 18:21:33,562 | INFO     | sum of square deviations: 5640782972.0
[2026-04-27 13:22:42] 2026-04-27 18:21:33,564 | INFO     | sum of deviations: -1637328389.0000005
[2026-04-27 13:22:42] 2026-04-27 18:21:33,564 | INFO     | mean x (centered): 0.0
[2026-04-27 13:22:42] 2026-04-27 18:21:33,564 | INFO     | mean y: 2396365.9733840306
[2026-04-27 13:22:42] 2026-04-27 18:21:33,564 | INFO     | intersect: 2396365.9733840306
[2026-04-27 13:22:42] 2026-04-27 18:21:33,564 | INFO     | chi2: 1.5062940480650744
[2026-04-27 13:22:42] 2026-04-27 18:21:33,565 | INFO     | current chi2=1.5062940480650744 (change=30.3845262678614 %)
[2026-04-27 13:22:42] 2026-04-27 18:21:33,565 | INFO     | sum of square deviations: 5325139844.5
[2026-04-27 13:22:42] 2026-04-27 18:21:33,566 | INFO     | sum of deviations: -1535455644.000001
[2026-04-27 13:22:42] 2026-04-27 18:21:33,566 | INFO     | mean x (centered): 0.0
[2026-04-27 13:22:42] 2026-04-27 18:21:33,567 | INFO     | mean y: 2396415.2248062016
[2026-04-27 13:22:42] 2026-04-27 18:21:33,567 | INFO     | intersect: 2396415.2248062016
[2026-04-27 13:22:42] 2026-04-27 18:21:33,567 | INFO     | chi2: 1.5063063209748875
[2026-04-27 13:22:42] 2026-04-27 18:21:33,567 | INFO     | current chi2=1.5063063209748875 (change=-0.0008147751648397525 %)
[2026-04-27 13:22:42] 2026-04-27 18:21:33,567 | INFO     | right removable region: 257
[2026-04-27 13:22:42] 2026-04-27 18:21:33,567 | INFO     | sum of square deviations: 5640782972.0
[2026-04-27 13:22:42] 2026-04-27 18:21:33,569 | INFO     | sum of deviations: -44810388757.0
[2026-04-27 13:22:42] 2026-04-27 18:21:33,569 | INFO     | mean x (centered): 0.0
[2026-04-27 13:22:42] 2026-04-27 18:21:33,569 | INFO     | mean y: 2401456.319391635
[2026-04-27 13:22:42] 2026-04-27 18:21:33,569 | INFO     | intersect: 2401456.319391635
[2026-04-27 13:22:42] 2026-04-27 18:21:33,569 | INFO     | chi2: 0.9055747610540458
[2026-04-27 13:22:42] 2026-04-27 18:21:33,569 | INFO     | current chi2=0.9055747610540458 (change=58.14760333705967 %)
[2026-04-27 13:22:42] 2026-04-27 18:21:33,570 | INFO     | sum of square deviations: 5325139844.5
[2026-04-27 13:22:42] 2026-04-27 18:21:33,571 | INFO     | sum of deviations: -31861628824.000004
[2026-04-27 13:22:42] 2026-04-27 18:21:33,571 | INFO     | mean x (centered): 0.0
[2026-04-27 13:22:42] 2026-04-27 18:21:33,571 | INFO     | mean y: 2395188.2248062016
[2026-04-27 13:22:42] 2026-04-27 18:21:33,571 | INFO     | intersect: 2395188.2248062016
[2026-04-27 13:22:42] 2026-04-27 18:21:33,572 | INFO     | chi2: 0.8376971870124542
[2026-04-27 13:22:42] 2026-04-27 18:21:33,572 | INFO     | current chi2=0.8376971870124542 (change=7.495524053981508 %)
[2026-04-27 13:22:42] 2026-04-27 18:21:33,572 | INFO     | left removable region: 10
[2026-04-27 13:22:42] 2026-04-27 18:21:33,572 | INFO     | sum of square deviations: 4672638308.0
[2026-04-27 13:22:42] 2026-04-27 18:21:33,574 | INFO     | sum of deviations: -15749063996.999996
[2026-04-27 13:22:42] 2026-04-27 18:21:33,574 | INFO     | mean x (centered): 0.0
[2026-04-27 13:22:42] 2026-04-27 18:21:33,574 | INFO     | mean y: 2403171.004048583
[2026-04-27 13:22:42] 2026-04-27 18:21:33,574 | INFO     | intersect: 2403171.004048583
[2026-04-27 13:22:42] 2026-04-27 18:21:33,574 | INFO     | chi2: 0.16540292448250285
[2026-04-27 13:22:42] 2026-04-27 18:21:33,574 | INFO     | current memory leak: -3.37 B/s (using 247 data points, chi2=0.17)
[2026-04-27 13:22:42] 2026-04-27 18:21:33,575 | INFO     | could have reported an average CPU frequency of 3369 MHz (13 samples)
[2026-04-27 13:22:42] 2026-04-27 18:21:33,575 | INFO     | ..............................
[2026-04-27 13:22:42] 2026-04-27 18:21:33,575 | INFO     | . Timing measurements:
[2026-04-27 13:22:42] 2026-04-27 18:21:33,575 | INFO     | . get job = 0 s
[2026-04-27 13:22:42] 2026-04-27 18:21:33,575 | INFO     | . initial setup = 7 s
[2026-04-27 13:22:42] 2026-04-27 18:21:33,575 | INFO     | . payload setup = 11 s
[2026-04-27 13:22:42] 2026-04-27 18:21:33,575 | INFO     | . stage-in = 0 s
[2026-04-27 13:22:42] 2026-04-27 18:21:33,575 | INFO     | . payload execution = 16312 s
[2026-04-27 13:22:42] 2026-04-27 18:21:33,575 | INFO     | . stage-out = 2 s
[2026-04-27 13:22:42] 2026-04-27 18:21:33,575 | INFO     | . log creation = 0 s
[2026-04-27 13:22:42] 2026-04-27 18:21:33,575 | INFO     | ..............................
[2026-04-27 13:22:42] 2026-04-27 18:21:33,638 | INFO     | 
[2026-04-27 13:22:42] 2026-04-27 18:21:33,638 | INFO     | job summary report
[2026-04-27 13:22:42] 2026-04-27 18:21:33,638 | INFO     | --------------------------------------------------
[2026-04-27 13:22:42] 2026-04-27 18:21:33,638 | INFO     | PanDA job id: 7116200461
[2026-04-27 13:22:42] 2026-04-27 18:21:33,638 | INFO     | task id: 49820244
[2026-04-27 13:22:42] 2026-04-27 18:21:33,638 | INFO     | errors: (none)
[2026-04-27 13:22:42] 2026-04-27 18:21:33,638 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-27 13:22:42] 2026-04-27 18:21:33,638 | INFO     | pilot state: finished 
[2026-04-27 13:22:42] 2026-04-27 18:21:33,638 | INFO     | transexitcode: 0
[2026-04-27 13:22:42] 2026-04-27 18:21:33,638 | INFO     | exeerrorcode: 0
[2026-04-27 13:22:42] 2026-04-27 18:21:33,638 | INFO     | exeerrordiag: 
[2026-04-27 13:22:42] 2026-04-27 18:21:33,639 | INFO     | exitcode: 0
[2026-04-27 13:22:42] 2026-04-27 18:21:33,639 | INFO     | exitmsg: OK
[2026-04-27 13:22:42] 2026-04-27 18:21:33,639 | INFO     | cpuconsumptiontime: 63284 s
[2026-04-27 13:22:42] 2026-04-27 18:21:33,639 | INFO     | nevents: 400
[2026-04-27 13:22:42] 2026-04-27 18:21:33,639 | INFO     | neventsw: 0
[2026-04-27 13:22:42] 2026-04-27 18:21:33,639 | INFO     | pid: 24463
[2026-04-27 13:22:42] 2026-04-27 18:21:33,639 | INFO     | pgrp: 24463
[2026-04-27 13:22:42] 2026-04-27 18:21:33,639 | INFO     | corecount: 4
[2026-04-27 13:22:42] 2026-04-27 18:21:33,639 | INFO     | event service: False
[2026-04-27 13:22:42] 2026-04-27 18:21:33,639 | INFO     | sizes: {0: 2274327, 1: 2276156, 11: 2276156, 16327: 2308051, 16330: 2323389, 16333: 2323767}
[2026-04-27 13:22:42] 2026-04-27 18:21:33,639 | INFO     | --------------------------------------------------
[2026-04-27 13:22:42] 2026-04-27 18:21:33,639 | INFO     | 
[2026-04-27 13:22:42] 2026-04-27 18:21:33,639 | INFO     | executing command: ls -lF /data/boinc/slots/3
[2026-04-27 13:22:42] 2026-04-27 18:21:33,665 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-27 13:22:42] 2026-04-27 18:21:33,665 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-27 13:22:42] 2026-04-27 18:21:33,665 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-27 13:22:42] 2026-04-27 18:21:33,665 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-27 13:22:42] 2026-04-27 18:21:33,665 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-27 13:22:42] 2026-04-27 18:21:33,665 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-27 13:22:42] 2026-04-27 18:21:33,665 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-27 13:22:42] 2026-04-27 18:21:33,665 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-27 13:22:42] 2026-04-27 18:21:33,665 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-27 13:22:42] 2026-04-27 18:21:33,665 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-27 13:22:42] 2026-04-27 18:21:33,666 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-27 13:22:42] 2026-04-27 18:21:33,666 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-27 13:22:42] 2026-04-27 18:21:33,666 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-27 13:22:42] 2026-04-27 18:21:33,666 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-27 13:22:42] 2026-04-27 18:21:33,666 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-27 13:22:42] 2026-04-27 18:21:33,666 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-27 13:22:42] 2026-04-27 18:21:33,666 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-27 13:22:42] 2026-04-27 18:21:33,666 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-27 13:22:42] 2026-04-27 18:21:33,666 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-27 13:22:42] 2026-04-27 18:21:33,666 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-27 13:22:42] 2026-04-27 18:21:33,666 | INFO     | job 7116200461 has completed (purged errors)
[2026-04-27 13:22:42] 2026-04-27 18:21:33,667 | INFO     | overall cleanup function is called
[2026-04-27 13:22:42] 2026-04-27 18:21:34,673 | INFO     | --- collectZombieJob: --- 10, [24463]
[2026-04-27 13:22:42] 2026-04-27 18:21:34,673 | INFO     | zombie collector waiting for pid 24463
[2026-04-27 13:22:42] 2026-04-27 18:21:34,673 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-27 13:22:42] 2026-04-27 18:21:34,673 | INFO     | collected zombie processes
[2026-04-27 13:22:42] 2026-04-27 18:21:34,673 | INFO     | will attempt to kill all subprocesses of pid=24463
[2026-04-27 13:22:42] 2026-04-27 18:21:34,751 | INFO     | process IDs to be killed: [24463] (in reverse order)
[2026-04-27 13:22:42] 2026-04-27 18:21:34,850 | WARNING  | found no corresponding commands to process id(s)
[2026-04-27 13:22:42] 2026-04-27 18:21:34,850 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-27 13:22:42] 2026-04-27 18:21:34,853 | INFO     | did not find any defunct processes belonging to 24463
[2026-04-27 13:22:42] 2026-04-27 18:21:34,855 | INFO     | did not find any defunct processes belonging to 24463
[2026-04-27 13:22:42] 2026-04-27 18:21:34,856 | INFO     | Ready for new job
[2026-04-27 13:22:42] 2026-04-27 18:21:34,857 | INFO     | ***************************************
[2026-04-27 13:22:42] 2026-04-27 18:21:34,857 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-27 13:22:42] 2026-04-27 18:21:34,857 | INFO     | ***************************************
[2026-04-27 13:22:42] 2026-04-27 18:21:34,857 | INFO     | 
[2026-04-27 13:22:42] 2026-04-27 18:21:34,858 | INFO     | architecture information:
[2026-04-27 13:22:42] 2026-04-27 18:21:34,860 | INFO     | executing command: cat /etc/os-release
[2026-04-27 13:22:42] 2026-04-27 18:21:34,893 | INFO     | cat /etc/os-release:
[2026-04-27 13:22:42] NAME="CentOS Linux"
[2026-04-27 13:22:42] VERSION="7 (Core)"
[2026-04-27 13:22:42] ID="centos"
[2026-04-27 13:22:42] ID_LIKE="rhel fedora"
[2026-04-27 13:22:42] VERSION_ID="7"
[2026-04-27 13:22:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-27 13:22:42] ANSI_COLOR="0;31"
[2026-04-27 13:22:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-27 13:22:42] HOME_URL="https://www.centos.org/"
[2026-04-27 13:22:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-27 13:22:42] 
[2026-04-27 13:22:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-27 13:22:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-27 13:22:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-27 13:22:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-27 13:22:42] 
[2026-04-27 13:22:42] 2026-04-27 18:21:34,893 | INFO     | ***************************************
[2026-04-27 13:22:42] 2026-04-27 18:21:35,396 | INFO     | executing command: df -mP /data/boinc/slots/3
[2026-04-27 13:22:42] 2026-04-27 18:21:35,418 | INFO     | sufficient remaining disk space (392332050432 B)
[2026-04-27 13:22:42] 2026-04-27 18:21:35,418 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-27 13:22:42] 2026-04-27 18:21:35,419 | INFO     | current server update state: UPDATING_FINAL
[2026-04-27 13:22:42] 2026-04-27 18:21:35,419 | INFO     | update_server=False
[2026-04-27 13:22:42] 2026-04-27 18:21:35,419 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-27 13:22:42] 2026-04-27 18:21:35,419 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-27 13:22:42] 2026-04-27 18:21:35,420 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-27 13:22:42] 2026-04-27 18:21:35,420 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-27 13:22:42] 2026-04-27 18:21:35,422 | INFO     | aborting loop
[2026-04-27 13:22:42] 2026-04-27 18:21:35,461 | INFO     | all data control threads have been joined
[2026-04-27 13:22:42] 2026-04-27 18:21:35,649 | INFO     | all job control threads have been joined
[2026-04-27 13:22:42] 2026-04-27 18:21:36,003 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-27 13:22:42] 2026-04-27 18:21:36,397 | INFO     | all payload control threads have been joined
[2026-04-27 13:22:42] 2026-04-27 18:21:36,424 | INFO     | [job] create_data_payload thread has finished
[2026-04-27 13:22:42] 2026-04-27 18:21:36,424 | INFO     | [job] retrieve thread has finished
[2026-04-27 13:22:42] 2026-04-27 18:21:36,424 | INFO     | [job] queue monitor thread has finished
[2026-04-27 13:22:42] 2026-04-27 18:21:36,429 | INFO     | [job] job monitor thread has finished
[2026-04-27 13:22:42] 2026-04-27 18:21:36,466 | INFO     | [data] control thread has finished
[2026-04-27 13:22:42] 2026-04-27 18:21:36,518 | INFO     | [payload] validate_post thread has finished
[2026-04-27 13:22:42] 2026-04-27 18:21:36,641 | INFO     | [payload] validate_pre thread has finished
[2026-04-27 13:22:42] 2026-04-27 18:21:36,655 | INFO     | [job] control thread has finished
[2026-04-27 13:22:42] 2026-04-27 18:21:36,895 | INFO     | [data] copytool_in thread has finished
[2026-04-27 13:22:42] 2026-04-27 18:21:37,009 | INFO     | [payload] execute_payloads thread has finished
[2026-04-27 13:22:42] 2026-04-27 18:21:37,402 | INFO     | [payload] control thread has finished
[2026-04-27 13:22:42] 2026-04-27 18:21:37,523 | INFO     | [payload] failed_post thread has finished
[2026-04-27 13:22:42] 2026-04-27 18:21:37,629 | INFO     | [job] validate thread has finished
[2026-04-27 13:22:42] 2026-04-27 18:21:38,009 | INFO     | [data] copytool_out thread has finished
[2026-04-27 13:22:42] 2026-04-27 18:21:39,428 | INFO     | [data] queue_monitor thread has finished
[2026-04-27 13:22:42] 2026-04-27 18:21:45,852 | INFO     | job.realtimelogging is not enabled
[2026-04-27 13:22:42] 2026-04-27 18:21:46,857 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-27 13:22:42] 2026-04-27 18:22:06,470 | INFO     | PID=19956 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-27 13:22:42] 2026-04-27 18:22:06,470 | INFO     | found 0 job(s) in 20 queues
[2026-04-27 13:22:42] 2026-04-27 18:22:06,470 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-27 13:22:42] 2026-04-27 18:22:06,470 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-27 13:22:42] 2026-04-27 18:22:35,490 | INFO     | [monitor] cgroup control has ended
[2026-04-27 13:22:42] 2026-04-27 18:22:37,317 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140678139086656)>', '<ExcThread(monitor, started 140677283309312)>']
[2026-04-27 13:22:42] 2026-04-27 18:22:37,607 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-27 13:22:42] 2026-04-27 18:22:37,607 | INFO     | [monitor] control thread has ended
[2026-04-27 13:22:42] 2026-04-27 18:22:42,342 | INFO     | all workflow threads have been joined
[2026-04-27 13:22:42] 2026-04-27 18:22:42,342 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-27 13:22:42] 2026-04-27 18:22:42,343 | INFO     | traces error code: 0
[2026-04-27 13:22:42] 2026-04-27 18:22:42,343 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-27 13:22:42] 2026-04-27 18:22:42,473 [wrapper] ==== pilot stdout END ====
[2026-04-27 13:22:42] 2026-04-27 18:22:42,476 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-27 13:22:42] 2026-04-27 18:22:42,481 [wrapper] pilotpid: 19956
[2026-04-27 13:22:42] 2026-04-27 18:22:42,483 [wrapper] Pilot exit status: 0
[2026-04-27 13:22:42] 2026-04-27 18:22:42,495 [wrapper] pandaids: 7116200461
[2026-04-27 13:22:42] 2026-04-27 18:22:42,531 [wrapper] cleanup supervisor_pilot   38498 19957
[2026-04-27 13:22:42] 2026-04-27 18:22:42,537 [wrapper] Test setup, not cleaning
[2026-04-27 13:22:42] 2026-04-27 18:22:42,541 [wrapper] apfmon messages muted
[2026-04-27 13:22:42] 2026-04-27 18:22:42,549 [wrapper] ==== wrapper stdout END ====
[2026-04-27 13:22:42] 2026-04-27 18:22:42,552 [wrapper] ==== wrapper stderr END ====
[2026-04-27 13:22:42]  *** Error codes and diagnostics ***
[2026-04-27 13:22:42]     "exeErrorCode": 0,
[2026-04-27 13:22:42]     "pilotErrorCode": 0,
[2026-04-27 13:22:42]  *** Listing of results directory ***
[2026-04-27 13:22:42] total 2460612
[2026-04-27 13:22:42] -rw-r--r-- 1 boinc boinc     683926 Apr 26 19:46 pilot3.tar.gz
[2026-04-27 13:22:42] -rw-r--r-- 1 boinc boinc       5631 Apr 26 19:47 queuedata.json
[2026-04-27 13:22:42] -rwx------ 1 boinc boinc      36322 Apr 26 19:47 runpilot2-wrapper.sh
[2026-04-27 13:22:42] -rw-r--r-- 1 boinc boinc        100 Apr 27 08:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-27 13:22:42] -rwxr-xr-x 1 boinc boinc       7986 Apr 27 08:48 run_atlas
[2026-04-27 13:22:42] -rw-r--r-- 1 boinc boinc        105 Apr 27 08:48 job.xml
[2026-04-27 13:22:42] -rw-r--r-- 2 boinc boinc 2235290498 Apr 27 08:48 EVNT.49820242._000031.pool.root.1
[2026-04-27 13:22:42] drwxrwx--x 2 boinc boinc       4096 Apr 27 08:48 shared
[2026-04-27 13:22:42] -rw-r--r-- 2 boinc boinc     697408 Apr 27 08:48 input.tar.gz
[2026-04-27 13:22:42] -rw-r--r-- 2 boinc boinc      15667 Apr 27 08:48 start_atlas.sh
[2026-04-27 13:22:42] -rw-r--r-- 1 boinc boinc          0 Apr 27 08:48 boinc_setup_complete
[2026-04-27 13:22:42] -rw-r--r-- 1 boinc boinc          0 Apr 27 08:48 boinc_lockfile
[2026-04-27 13:22:42] -rw-r--r-- 1 boinc boinc       2549 Apr 27 08:48 pandaJob.out
[2026-04-27 13:22:42] -rw------- 1 boinc boinc     996913 Apr 27 08:49 agis_schedconf.cvmfs.json
[2026-04-27 13:22:42] -rw------- 1 boinc boinc        426 Apr 27 08:49 workernode_map.json
[2026-04-27 13:22:42] drwx------ 5 boinc boinc       4096 Apr 27 08:49 pilot3
[2026-04-27 13:22:42] -rw-r--r-- 1 boinc boinc       9202 Apr 27 08:50 init_data.xml
[2026-04-27 13:22:42] -rw------- 1 boinc boinc  276334655 Apr 27 13:20 HITS.49820244._018886.pool.root.1
[2026-04-27 13:22:42] -rw-r--r-- 1 boinc boinc        489 Apr 27 13:21 boinc_task_state.xml
[2026-04-27 13:22:42] -rw------- 1 boinc boinc         95 Apr 27 13:21 pilot_heartbeat.json
[2026-04-27 13:22:42] -rw------- 1 boinc boinc       1020 Apr 27 13:21 memory_monitor_summary.json
[2026-04-27 13:22:42] -rw------- 1 boinc boinc    1512704 Apr 27 13:21 agis_ddmendpoints.agis.ALL.json
[2026-04-27 13:22:42] -rw------- 1 boinc boinc     459835 Apr 27 13:21 log.49820244._018886.job.log.tgz.1
[2026-04-27 13:22:42] -rw------- 1 boinc boinc       6325 Apr 27 13:21 heartbeat_new.json
[2026-04-27 13:22:42] -rw------- 1 boinc boinc       6216 Apr 27 13:21 heartbeat.json
[2026-04-27 13:22:42] -rw-r--r-- 1 boinc boinc       8192 Apr 27 13:22 boinc_mmap_file
[2026-04-27 13:22:42] -rw-r--r-- 1 boinc boinc         28 Apr 27 13:22 wrapper_checkpoint.txt
[2026-04-27 13:22:42] -rw------- 1 boinc boinc       4815 Apr 27 13:22 pilotlog.txt
[2026-04-27 13:22:42] -rw------- 1 boinc boinc    1487456 Apr 27 13:22 log.49820244._018886.job.log.1
[2026-04-27 13:22:42] -rw------- 1 boinc boinc        357 Apr 27 13:22 output.list
[2026-04-27 13:22:42] -rw-r--r-- 1 boinc boinc        410 Apr 27 13:22 runtime_log
[2026-04-27 13:22:42] -rw------- 1 boinc boinc    1966080 Apr 27 13:22 result.tar.gz
[2026-04-27 13:22:42] -rw-r--r-- 1 boinc boinc       8353 Apr 27 13:22 runtime_log.err
[2026-04-27 13:22:42] -rw------- 1 boinc boinc        647 Apr 27 13:22 b234e107eac4.diag
[2026-04-27 13:22:42] -rw-r--r-- 1 boinc boinc      20634 Apr 27 13:22 stderr.txt
[2026-04-27 13:22:42] HITS file was successfully produced:
[2026-04-27 13:22:42] -rw------- 1 boinc boinc 276334655 Apr 27 13:20 shared/HITS.pool.root.1
[2026-04-27 13:22:42]  *** Contents of shared directory: ***
[2026-04-27 13:22:42] total 2455392
[2026-04-27 13:22:42] -rw-r--r-- 2 boinc boinc 2235290498 Apr 27 08:48 ATLAS.root_0
[2026-04-27 13:22:42] -rw-r--r-- 2 boinc boinc     697408 Apr 27 08:48 input.tar.gz
[2026-04-27 13:22:42] -rw-r--r-- 2 boinc boinc      15667 Apr 27 08:48 start_atlas.sh
[2026-04-27 13:22:42] -rw------- 1 boinc boinc  276334655 Apr 27 13:20 HITS.pool.root.1
[2026-04-27 13:22:42] -rw------- 1 boinc boinc    1966080 Apr 27 13:22 result.tar.gz
13:22:44 (16179): run_atlas exited; CPU time 63425.973342
13:22:44 (16179): called boinc_finish(0)

</stderr_txt>
]]>

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