Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:29:31 (146551): wrapper (7.7.26015): starting
18:29:31 (146551): wrapper: running run_atlas (--nthreads 4)
[2026-04-27 18:29:31] Arguments: --nthreads 4
[2026-04-27 18:29:31] Threads: 4
[2026-04-27 18:29:31] Checking for CVMFS
[2026-04-27 18:29:31] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-27 18:29:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-27 18:29:31] Running cvmfs_config stat atlas.cern.ch
[2026-04-27 18:29:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-27 18:29:31] 2.9.2.0 4129081 1517 81856 158935 0 50 20792333 36864000 0 130560 0 774848 99.984 63231 12313 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-27 18:29:31] CVMFS is ok
[2026-04-27 18:29:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-27 18:29:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-27 18:29:31] Further information can be found at the LHC@home message board.
[2026-04-27 18:29:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-27 18:29:31] Checking for apptainer binary...
[2026-04-27 18:29:31] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-27 18:29:31] Running /usr/bin/apptainer --version
[2026-04-27 18:29:31] apptainer version 1.4.1-1.1
[2026-04-27 18:29:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-27 18:29:32] magicA250
[2026-04-27 18:29:32] apptainer works
[2026-04-27 18:29:32] Set ATHENA_PROC_NUMBER=4
[2026-04-27 18:29:32] Set ATHENA_CORE_NUMBER=4
[2026-04-27 18:29:32] Starting ATLAS job with PandaID=7116198145
[2026-04-27 18:29:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-27 20:40:03]  *** The last 200 lines of the pilot log: ***
[2026-04-27 20:40:03] 2026-04-27 18:39:15,830 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-27 20:40:03] 2026-04-27 18:39:15,830 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-27 20:40:03] 2026-04-27 18:39:15,830 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-27 20:40:03] 2026-04-27 18:39:15,830 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-27 20:40:03] 2026-04-27 18:39:15,830 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-27 20:40:03] 2026-04-27 18:39:15,830 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-27 20:40:03] 2026-04-27 18:39:15,830 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-27 20:40:03] 2026-04-27 18:39:15,830 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-27 20:40:03] 2026-04-27 18:39:15,830 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-27 20:40:03] 2026-04-27 18:39:15,830 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-27 20:40:03] 2026-04-27 18:39:15,830 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-27 20:40:03] 2026-04-27 18:39:15,830 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-27 20:40:03] 2026-04-27 18:39:15,830 | INFO     | job 7116198145 has completed (purged errors)
[2026-04-27 20:40:03] 2026-04-27 18:39:15,830 | INFO     | overall cleanup function is called
[2026-04-27 20:40:03] 2026-04-27 18:39:16,838 | INFO     | --- collectZombieJob: --- 10, [155177]
[2026-04-27 20:40:03] 2026-04-27 18:39:16,838 | INFO     | zombie collector waiting for pid 155177
[2026-04-27 20:40:03] 2026-04-27 18:39:16,838 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-27 20:40:03] 2026-04-27 18:39:16,838 | INFO     | collected zombie processes
[2026-04-27 20:40:03] 2026-04-27 18:39:16,838 | INFO     | will attempt to kill all subprocesses of pid=155177
[2026-04-27 20:40:03] 2026-04-27 18:39:16,872 | INFO     | process IDs to be killed: [155177] (in reverse order)
[2026-04-27 20:40:03] 2026-04-27 18:39:16,907 | WARNING  | found no corresponding commands to process id(s)
[2026-04-27 20:40:03] 2026-04-27 18:39:16,907 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-27 20:40:03] 2026-04-27 18:39:16,909 | INFO     | did not find any defunct processes belonging to 155177
[2026-04-27 20:40:03] 2026-04-27 18:39:16,910 | INFO     | did not find any defunct processes belonging to 155177
[2026-04-27 20:40:03] 2026-04-27 18:39:16,910 | INFO     | Ready for new job
[2026-04-27 20:40:03] 2026-04-27 18:39:16,911 | INFO     | ***************************************
[2026-04-27 20:40:03] 2026-04-27 18:39:16,911 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-27 20:40:03] 2026-04-27 18:39:16,911 | INFO     | ***************************************
[2026-04-27 20:40:03] 2026-04-27 18:39:16,911 | INFO     | 
[2026-04-27 20:40:03] 2026-04-27 18:39:16,912 | INFO     | architecture information:
[2026-04-27 20:40:03] 2026-04-27 18:39:16,912 | INFO     | executing command: cat /etc/os-release
[2026-04-27 20:40:03] 2026-04-27 18:39:16,927 | INFO     | cat /etc/os-release:
[2026-04-27 20:40:03] NAME="CentOS Linux"
[2026-04-27 20:40:03] VERSION="7 (Core)"
[2026-04-27 20:40:03] ID="centos"
[2026-04-27 20:40:03] ID_LIKE="rhel fedora"
[2026-04-27 20:40:03] VERSION_ID="7"
[2026-04-27 20:40:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-27 20:40:03] ANSI_COLOR="0;31"
[2026-04-27 20:40:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-27 20:40:03] HOME_URL="https://www.centos.org/"
[2026-04-27 20:40:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-27 20:40:03] 
[2026-04-27 20:40:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-27 20:40:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-27 20:40:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-27 20:40:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-27 20:40:03] 
[2026-04-27 20:40:03] 2026-04-27 18:39:16,927 | INFO     | ***************************************
[2026-04-27 20:40:03] 2026-04-27 18:39:17,430 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-27 20:40:03] 2026-04-27 18:39:17,449 | INFO     | sufficient remaining disk space (329598894080 B)
[2026-04-27 20:40:03] 2026-04-27 18:39:17,449 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-27 20:40:03] 2026-04-27 18:39:17,449 | INFO     | current server update state: UPDATING_FINAL
[2026-04-27 20:40:03] 2026-04-27 18:39:17,449 | INFO     | update_server=False
[2026-04-27 20:40:03] 2026-04-27 18:39:17,449 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-27 20:40:03] 2026-04-27 18:39:17,449 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-27 20:40:03] 2026-04-27 18:39:17,450 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-27 20:40:03] 2026-04-27 18:39:17,594 | INFO     | all data control threads have been joined
[2026-04-27 20:40:03] 2026-04-27 18:39:17,907 | INFO     | all job control threads have been joined
[2026-04-27 20:40:03] 2026-04-27 18:39:17,938 | INFO     | all payload control threads have been joined
[2026-04-27 20:40:03] 2026-04-27 18:39:18,264 | INFO     | job.realtimelogging is not enabled
[2026-04-27 20:40:03] 2026-04-27 18:39:18,292 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-27 20:40:03] 2026-04-27 18:39:18,292 | INFO     | aborting loop
[2026-04-27 20:40:03] 2026-04-27 18:39:18,455 | INFO     | [job] retrieve thread has finished
[2026-04-27 20:40:03] 2026-04-27 18:39:18,455 | INFO     | [job] queue monitor thread has finished
[2026-04-27 20:40:03] 2026-04-27 18:39:18,542 | INFO     | [payload] validate_pre thread has finished
[2026-04-27 20:40:03] 2026-04-27 18:39:18,599 | INFO     | [data] control thread has finished
[2026-04-27 20:40:03] 2026-04-27 18:39:18,674 | INFO     | [job] validate thread has finished
[2026-04-27 20:40:03] 2026-04-27 18:39:18,732 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-27 20:40:03] 2026-04-27 18:39:18,912 | INFO     | [job] control thread has finished
[2026-04-27 20:40:03] 2026-04-27 18:39:18,944 | INFO     | [payload] control thread has finished
[2026-04-27 20:40:03] 2026-04-27 18:39:19,246 | INFO     | [payload] execute_payloads thread has finished
[2026-04-27 20:40:03] 2026-04-27 18:39:19,270 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-27 20:40:03] 2026-04-27 18:39:19,298 | INFO     | [job] job monitor thread has finished
[2026-04-27 20:40:03] 2026-04-27 18:39:19,472 | INFO     | [payload] validate_post thread has finished
[2026-04-27 20:40:03] 2026-04-27 18:39:19,671 | INFO     | [data] copytool_in thread has finished
[2026-04-27 20:40:03] 2026-04-27 18:39:19,881 | INFO     | [payload] failed_post thread has finished
[2026-04-27 20:40:03] 2026-04-27 18:39:19,914 | INFO     | [job] create_data_payload thread has finished
[2026-04-27 20:40:03] 2026-04-27 18:39:20,738 | INFO     | [data] copytool_out thread has finished
[2026-04-27 20:40:03] 2026-04-27 18:39:21,456 | INFO     | [data] queue_monitor thread has finished
[2026-04-27 20:40:03] 2026-04-27 18:39:48,306 | INFO     | PID=150669 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-27 20:40:03] 2026-04-27 18:39:48,307 | INFO     | found 0 job(s) in 20 queues
[2026-04-27 20:40:03] 2026-04-27 18:39:48,307 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-27 20:40:03] 2026-04-27 18:39:48,307 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-27 20:40:03] 2026-04-27 18:39:56,578 | INFO     | [monitor] cgroup control has ended
[2026-04-27 20:40:03] 2026-04-27 18:39:58,090 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139756902106944)>', '<ExcThread(monitor, started 139756256081664)>']
[2026-04-27 20:40:03] 2026-04-27 18:39:58,360 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-27 20:40:03] 2026-04-27 18:39:58,360 | INFO     | [monitor] control thread has ended
[2026-04-27 20:40:03] 2026-04-27 18:40:03,115 | INFO     | all workflow threads have been joined
[2026-04-27 20:40:03] 2026-04-27 18:40:03,116 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-27 20:40:03] 2026-04-27 18:40:03,116 | INFO     | traces error code: 0
[2026-04-27 20:40:03] 2026-04-27 18:40:03,116 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-27 20:40:03] 2026-04-27 18:40:03,194 [wrapper] ==== pilot stdout END ====
[2026-04-27 20:40:03] 2026-04-27 18:40:03,199 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-27 20:40:03] 2026-04-27 18:40:03,203 [wrapper] pilotpid: 150669
[2026-04-27 20:40:03] 2026-04-27 18:40:03,207 [wrapper] Pilot exit status: 0
[2026-04-27 20:40:03] 2026-04-27 18:40:03,218 [wrapper] pandaids: 7116198145
[2026-04-27 20:40:03] 2026-04-27 18:40:03,240 [wrapper] cleanup supervisor_pilot  161503 150670
[2026-04-27 20:40:03] 2026-04-27 18:40:03,244 [wrapper] Test setup, not cleaning
[2026-04-27 20:40:03] 2026-04-27 18:40:03,248 [wrapper] apfmon messages muted
[2026-04-27 20:40:03] 2026-04-27 18:40:03,252 [wrapper] ==== wrapper stdout END ====
[2026-04-27 20:40:03] 2026-04-27 18:40:03,256 [wrapper] ==== wrapper stderr END ====
[2026-04-27 20:40:03]  *** Error codes and diagnostics ***
[2026-04-27 20:40:03]     "exeErrorCode": 0,
[2026-04-27 20:40:03]     "pilotErrorCode": 0,
[2026-04-27 20:40:03]  *** Listing of results directory ***
[2026-04-27 20:40:03] total 2447252
[2026-04-27 20:40:03] -rw-r--r-- 1 boinc boinc     683926 Apr 27 00:33 pilot3.tar.gz
[2026-04-27 20:40:03] -rwx------ 1 boinc boinc      36322 Apr 27 00:37 runpilot2-wrapper.sh
[2026-04-27 20:40:03] -rw-r--r-- 1 boinc boinc       5631 Apr 27 00:39 queuedata.json
[2026-04-27 20:40:03] -rw-r--r-- 1 boinc boinc        100 Apr 27 18:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-27 20:40:03] -rwxr-xr-x 1 boinc boinc       7986 Apr 27 18:29 run_atlas
[2026-04-27 20:40:03] -rw-r--r-- 1 boinc boinc        105 Apr 27 18:29 job.xml
[2026-04-27 20:40:03] -rw-r--r-- 2 boinc boinc 2228643700 Apr 27 18:29 EVNT.49820242._000019.pool.root.1
[2026-04-27 20:40:03] drwxrwx--x 2 boinc boinc       4096 Apr 27 18:29 shared
[2026-04-27 20:40:03] -rw-r--r-- 2 boinc boinc     697409 Apr 27 18:29 input.tar.gz
[2026-04-27 20:40:03] -rw-r--r-- 2 boinc boinc      15667 Apr 27 18:29 start_atlas.sh
[2026-04-27 20:40:03] -rw-r--r-- 1 boinc boinc          0 Apr 27 18:29 boinc_setup_complete
[2026-04-27 20:40:03] -rw-r--r-- 1 boinc boinc       6294 Apr 27 18:29 init_data.xml
[2026-04-27 20:40:03] -rw-r--r-- 1 boinc boinc          0 Apr 27 18:29 boinc_lockfile
[2026-04-27 20:40:03] -rw-r--r-- 1 boinc boinc       2549 Apr 27 18:29 pandaJob.out
[2026-04-27 20:40:03] -rw------- 1 boinc boinc     997697 Apr 27 18:29 agis_schedconf.cvmfs.json
[2026-04-27 20:40:03] -rw------- 1 boinc boinc    1508585 Apr 27 18:29 agis_ddmendpoints.agis.ALL.json
[2026-04-27 20:40:03] -rw------- 1 boinc boinc        429 Apr 27 18:29 workernode_map.json
[2026-04-27 20:40:03] drwx------ 5 boinc boinc       4096 Apr 27 18:29 pilot3
[2026-04-27 20:40:03] -rw------- 1 boinc boinc  271129401 Apr 27 20:38 HITS.49820244._017863.pool.root.1
[2026-04-27 20:40:03] -rw-r--r-- 1 boinc boinc        489 Apr 27 20:38 boinc_task_state.xml
[2026-04-27 20:40:03] -rw------- 1 boinc boinc       1022 Apr 27 20:39 memory_monitor_summary.json
[2026-04-27 20:40:03] -rw------- 1 boinc boinc     308907 Apr 27 20:39 log.49820244._017863.job.log.tgz.1
[2026-04-27 20:40:03] -rw------- 1 boinc boinc       6342 Apr 27 20:39 heartbeat_new.json
[2026-04-27 20:40:03] -rw------- 1 boinc boinc       6233 Apr 27 20:39 heartbeat.json
[2026-04-27 20:40:03] -rw-r--r-- 1 boinc boinc         27 Apr 27 20:39 wrapper_checkpoint.txt
[2026-04-27 20:40:03] -rw-r--r-- 1 boinc boinc       8192 Apr 27 20:39 boinc_mmap_file
[2026-04-27 20:40:03] -rw------- 1 boinc boinc         95 Apr 27 20:39 pilot_heartbeat.json
[2026-04-27 20:40:03] -rw------- 1 boinc boinc       4822 Apr 27 20:40 pilotlog.txt
[2026-04-27 20:40:03] -rw------- 1 boinc boinc     736198 Apr 27 20:40 log.49820244._017863.job.log.1
[2026-04-27 20:40:03] -rw------- 1 boinc boinc        357 Apr 27 20:40 output.list
[2026-04-27 20:40:03] -rw-r--r-- 1 boinc boinc        410 Apr 27 20:40 runtime_log
[2026-04-27 20:40:03] -rw------- 1 boinc boinc    1064960 Apr 27 20:40 result.tar.gz
[2026-04-27 20:40:03] -rw-r--r-- 1 boinc boinc       8534 Apr 27 20:40 runtime_log.err
[2026-04-27 20:40:03] -rw------- 1 boinc boinc        661 Apr 27 20:40 9390f47b0a3f.diag
[2026-04-27 20:40:03] -rw-r--r-- 1 boinc boinc      11904 Apr 27 20:40 stderr.txt
[2026-04-27 20:40:03] HITS file was successfully produced:
[2026-04-27 20:40:03] -rw------- 1 boinc boinc 271129401 Apr 27 20:38 shared/HITS.pool.root.1
[2026-04-27 20:40:03]  *** Contents of shared directory: ***
[2026-04-27 20:40:03] total 2442936
[2026-04-27 20:40:03] -rw-r--r-- 2 boinc boinc 2228643700 Apr 27 18:29 ATLAS.root_0
[2026-04-27 20:40:03] -rw-r--r-- 2 boinc boinc     697409 Apr 27 18:29 input.tar.gz
[2026-04-27 20:40:03] -rw-r--r-- 2 boinc boinc      15667 Apr 27 18:29 start_atlas.sh
[2026-04-27 20:40:03] -rw------- 1 boinc boinc  271129401 Apr 27 20:38 HITS.pool.root.1
[2026-04-27 20:40:03] -rw------- 1 boinc boinc    1064960 Apr 27 20:40 result.tar.gz
20:40:05 (146551): run_atlas exited; CPU time 28804.129774
20:40:05 (146551): called boinc_finish(0)

</stderr_txt>
]]>

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