Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:06:51 (263975): wrapper (7.7.26015): starting
03:06:51 (263975): wrapper: running run_atlas (--nthreads 12)
[2026-04-27 03:06:51] Arguments: --nthreads 12
[2026-04-27 03:06:51] Threads: 12
[2026-04-27 03:06:51] Checking for CVMFS
[2026-04-27 03:06:51] No cvmfs_config command found, will try listing directly
[2026-04-27 03:06:51] CVMFS is ok
[2026-04-27 03:06:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-27 03:06:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-27 03:06:51] Further information can be found at the LHC@home message board.
[2026-04-27 03:06:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-27 03:06:51] Checking for apptainer binary...
[2026-04-27 03:06:51] which: no apptainer in ((null))
[2026-04-27 03:06:51] apptainer is not installed, using version from CVMFS
[2026-04-27 03:06:51] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-27 03:06:51] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot72/slots/22/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut19.grid.cesnet.cz
[2026-04-27 03:06:51] apptainer works
[2026-04-27 03:06:51] Set ATHENA_PROC_NUMBER=12
[2026-04-27 03:06:51] Set ATHENA_CORE_NUMBER=12
[2026-04-27 03:06:51] Starting ATLAS job with PandaID=7116189694
[2026-04-27 03:06:51] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot72/slots/22 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-27 04:00:12]  *** The last 200 lines of the pilot log: ***
[2026-04-27 04:00:12]  domain=
[2026-04-27 04:00:12]  filesize=380830
[2026-04-27 04:00:12]  filetype=log
[2026-04-27 04:00:12]  guid=9baca563-9422-49e8-a82b-c19923693393
[2026-04-27 04:00:12]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-04-27 04:00:12]  is_altstaged=None
[2026-04-27 04:00:12]  is_tar=False
[2026-04-27 04:00:12]  lfn=log.49820375._014395.job.log.tgz.1
[2026-04-27 04:00:12]  mtime=0
[2026-04-27 04:00:12]  protocol_id=None
[2026-04-27 04:00:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-27 04:00:12]  replicas=None
[2026-04-27 04:00:12]  scope=mc23_13p6TeV
[2026-04-27 04:00:12]  status=None
[2026-04-27 04:00:12]  status_code=0
[2026-04-27 04:00:12]  storage_token=
[2026-04-27 04:00:12]  surl=/var/lib/boinc/var/slot72/slots/22/PanDA_Pilot-7116189694/log.49820375._014395.job.log.tgz.1
[2026-04-27 04:00:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f0/ee/log.49820375._014395.job.log.tgz.1
[2026-04-27 04:00:12]  workdir=None
[2026-04-27 04:00:12] ]
[2026-04-27 04:00:12] 2026-04-27 01:59:24,859 | INFO     | transferring file log.49820375._014395.job.log.tgz.1 from /var/lib/boinc/var/slot72/slots/22/PanDA_Pilot-7116189694/log.49820375._014395.job.log.tgz.1 to /var/lib/
[2026-04-27 04:00:12] 2026-04-27 01:59:24,859 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot72/slots/22/PanDA_Pilot-7116189694/log.49820375._014395.job.log.tgz.1 /var/lib/boinc/var/slot72/slots/22/
[2026-04-27 04:00:12] 2026-04-27 01:59:24,877 | INFO     | adding to output.list: log.49820375._014395.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f0/ee/log.49820375._014395.job.log.tg
[2026-04-27 04:00:12] 2026-04-27 01:59:24,877 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-27 04:00:12] 2026-04-27 01:59:24,877 | INFO     | summary of transferred files:
[2026-04-27 04:00:12] 2026-04-27 01:59:24,877 | INFO     |  -- lfn=log.49820375._014395.job.log.tgz.1, status_code=0, status=transferred
[2026-04-27 04:00:12] 2026-04-27 01:59:24,878 | INFO     | stage-out finished correctly
[2026-04-27 04:00:12] 2026-04-27 01:59:25,786 | INFO     | monitor loop #236: job 0:7116189694 is in state 'finished'
[2026-04-27 04:00:12] 2026-04-27 01:59:25,786 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-27 04:00:12] 2026-04-27 01:59:27,714 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-27 04:00:12] 2026-04-27 01:59:28,289 | INFO     | monitor loop #237: job 0:7116189694 is in state 'finished'
[2026-04-27 04:00:12] 2026-04-27 01:59:28,289 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-27 04:00:12] 2026-04-27 01:59:28,955 | INFO     | job 7116189694 has state=finished
[2026-04-27 04:00:12] 2026-04-27 01:59:28,955 | INFO     | preparing for final server update for job 7116189694 in state='finished'
[2026-04-27 04:00:12] 2026-04-27 01:59:28,956 | INFO     | reading metadata from: /var/lib/boinc/var/slot72/slots/22/PanDA_Pilot-7116189694/jobReport.json
[2026-04-27 04:00:12] 2026-04-27 01:59:28,958 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot72/slots/22/workernode_map.json
[2026-04-27 04:00:12] 2026-04-27 01:59:28,958 | INFO     | this job has now completed (state=finished)
[2026-04-27 04:00:12] 2026-04-27 01:59:28,958 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-27 04:00:12] 2026-04-27 01:59:28,958 | INFO     | log transfer has been attempted: DONE
[2026-04-27 04:00:12] 2026-04-27 01:59:28,958 | INFO     | job 7116189694 has finished - writing final server update
[2026-04-27 04:00:12] 2026-04-27 01:59:28,958 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1393901/.job.ad'
[2026-04-27 04:00:12] 2026-04-27 01:59:28,959 | INFO     | total number of processed events: 400 (read)
[2026-04-27 04:00:12] 2026-04-27 01:59:28,977 | INFO     | using path: /var/lib/boinc/var/slot72/slots/22/PanDA_Pilot-7116189694/memory_monitor_summary.json (trf name=prmon)
[2026-04-27 04:00:12] 2026-04-27 01:59:28,977 | INFO     | extracted standard info from prmon json
[2026-04-27 04:00:12] 2026-04-27 01:59:28,977 | INFO     | extracted standard memory fields from prmon json
[2026-04-27 04:00:12] 2026-04-27 01:59:28,977 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-27 04:00:12] 2026-04-27 01:59:28,977 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-27 04:00:12] 2026-04-27 01:59:28,978 | INFO     | fitting pss+swap vs Time
[2026-04-27 04:00:12] 2026-04-27 01:59:28,978 | INFO     | sum of square deviations: 28242390.0
[2026-04-27 04:00:12] 2026-04-27 01:59:28,978 | INFO     | sum of deviations: 335550935.0
[2026-04-27 04:00:12] 2026-04-27 01:59:28,978 | INFO     | mean x (centered): 0.0
[2026-04-27 04:00:12] 2026-04-27 01:59:28,978 | INFO     | mean y: 2765377.2444444443
[2026-04-27 04:00:12] 2026-04-27 01:59:28,978 | INFO     | intersect: 2765377.2444444443
[2026-04-27 04:00:12] 2026-04-27 01:59:28,978 | INFO     | chi2: 0.0003740467068058946
[2026-04-27 04:00:12] 2026-04-27 01:59:28,978 | INFO     | current memory leak: 11.88 B/s (using 45 data points, chi2=0.00)
[2026-04-27 04:00:12] 2026-04-27 01:59:28,979 | INFO     | could have reported an average CPU frequency of 3602 MHz (5 samples)
[2026-04-27 04:00:12] 2026-04-27 01:59:28,979 | INFO     | ..............................
[2026-04-27 04:00:12] 2026-04-27 01:59:28,979 | INFO     | . Timing measurements:
[2026-04-27 04:00:12] 2026-04-27 01:59:28,979 | INFO     | . get job = 0 s
[2026-04-27 04:00:12] 2026-04-27 01:59:28,979 | INFO     | . initial setup = 4 s
[2026-04-27 04:00:12] 2026-04-27 01:59:28,979 | INFO     | . payload setup = 5 s
[2026-04-27 04:00:12] 2026-04-27 01:59:28,979 | INFO     | . stage-in = 0 s
[2026-04-27 04:00:12] 2026-04-27 01:59:28,979 | INFO     | . payload execution = 3122 s
[2026-04-27 04:00:12] 2026-04-27 01:59:28,979 | INFO     | . stage-out = 0 s
[2026-04-27 04:00:12] 2026-04-27 01:59:28,979 | INFO     | . log creation = 0 s
[2026-04-27 04:00:12] 2026-04-27 01:59:28,979 | INFO     | ..............................
[2026-04-27 04:00:12] 2026-04-27 01:59:29,027 | INFO     | 
[2026-04-27 04:00:12] 2026-04-27 01:59:29,027 | INFO     | job summary report
[2026-04-27 04:00:12] 2026-04-27 01:59:29,027 | INFO     | --------------------------------------------------
[2026-04-27 04:00:12] 2026-04-27 01:59:29,027 | INFO     | PanDA job id: 7116189694
[2026-04-27 04:00:12] 2026-04-27 01:59:29,027 | INFO     | task id: 49820375
[2026-04-27 04:00:12] 2026-04-27 01:59:29,027 | INFO     | errors: (none)
[2026-04-27 04:00:12] 2026-04-27 01:59:29,027 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-27 04:00:12] 2026-04-27 01:59:29,027 | INFO     | pilot state: finished 
[2026-04-27 04:00:12] 2026-04-27 01:59:29,027 | INFO     | transexitcode: 0
[2026-04-27 04:00:12] 2026-04-27 01:59:29,027 | INFO     | exeerrorcode: 0
[2026-04-27 04:00:12] 2026-04-27 01:59:29,027 | INFO     | exeerrordiag: 
[2026-04-27 04:00:12] 2026-04-27 01:59:29,027 | INFO     | exitcode: 0
[2026-04-27 04:00:12] 2026-04-27 01:59:29,028 | INFO     | exitmsg: OK
[2026-04-27 04:00:12] 2026-04-27 01:59:29,028 | INFO     | cpuconsumptiontime: 33933 s
[2026-04-27 04:00:12] 2026-04-27 01:59:29,028 | INFO     | nevents: 400
[2026-04-27 04:00:12] 2026-04-27 01:59:29,028 | INFO     | neventsw: 0
[2026-04-27 04:00:12] 2026-04-27 01:59:29,028 | INFO     | pid: 274453
[2026-04-27 04:00:12] 2026-04-27 01:59:29,028 | INFO     | pgrp: 274453
[2026-04-27 04:00:12] 2026-04-27 01:59:29,028 | INFO     | corecount: 12
[2026-04-27 04:00:12] 2026-04-27 01:59:29,028 | INFO     | event service: False
[2026-04-27 04:00:12] 2026-04-27 01:59:29,028 | INFO     | sizes: {0: 2276424, 10: 2276424, 3132: 2301913, 3133: 2310935, 3135: 2310991, 3137: 2311217}
[2026-04-27 04:00:12] 2026-04-27 01:59:29,028 | INFO     | --------------------------------------------------
[2026-04-27 04:00:12] 2026-04-27 01:59:29,028 | INFO     | 
[2026-04-27 04:00:12] 2026-04-27 01:59:29,028 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot72/slots/22
[2026-04-27 04:00:12] 2026-04-27 01:59:29,049 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-27 04:00:12] 2026-04-27 01:59:29,049 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-27 04:00:12] 2026-04-27 01:59:29,049 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-27 04:00:12] 2026-04-27 01:59:29,049 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-27 04:00:12] 2026-04-27 01:59:29,049 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-27 04:00:12] 2026-04-27 01:59:29,050 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-27 04:00:12] 2026-04-27 01:59:29,050 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-27 04:00:12] 2026-04-27 01:59:29,050 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-27 04:00:12] 2026-04-27 01:59:29,050 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-27 04:00:12] 2026-04-27 01:59:29,050 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-27 04:00:12] 2026-04-27 01:59:29,050 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-27 04:00:12] 2026-04-27 01:59:29,050 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-27 04:00:12] 2026-04-27 01:59:29,050 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-27 04:00:12] 2026-04-27 01:59:29,050 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-27 04:00:12] 2026-04-27 01:59:29,050 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-27 04:00:12] 2026-04-27 01:59:29,050 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-27 04:00:12] 2026-04-27 01:59:29,050 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-27 04:00:12] 2026-04-27 01:59:29,050 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-27 04:00:12] 2026-04-27 01:59:29,050 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-27 04:00:12] 2026-04-27 01:59:29,050 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-27 04:00:12] 2026-04-27 01:59:29,050 | INFO     | job 7116189694 has completed (purged errors)
[2026-04-27 04:00:12] 2026-04-27 01:59:29,050 | INFO     | overall cleanup function is called
[2026-04-27 04:00:12] 2026-04-27 01:59:30,058 | INFO     | --- collectZombieJob: --- 10, [274453]
[2026-04-27 04:00:12] 2026-04-27 01:59:30,061 | INFO     | zombie collector waiting for pid 274453
[2026-04-27 04:00:12] 2026-04-27 01:59:30,061 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-27 04:00:12] 2026-04-27 01:59:30,061 | INFO     | collected zombie processes
[2026-04-27 04:00:12] 2026-04-27 01:59:30,061 | INFO     | will attempt to kill all subprocesses of pid=274453
[2026-04-27 04:00:12] 2026-04-27 01:59:30,338 | INFO     | process IDs to be killed: [274453] (in reverse order)
[2026-04-27 04:00:12] 2026-04-27 01:59:30,476 | WARNING  | found no corresponding commands to process id(s)
[2026-04-27 04:00:12] 2026-04-27 01:59:30,476 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-27 04:00:12] 2026-04-27 01:59:30,498 | INFO     | did not find any defunct processes belonging to 274453
[2026-04-27 04:00:12] 2026-04-27 01:59:30,518 | INFO     | did not find any defunct processes belonging to 274453
[2026-04-27 04:00:12] 2026-04-27 01:59:30,518 | INFO     | Ready for new job
[2026-04-27 04:00:12] 2026-04-27 01:59:30,519 | INFO     | ***************************************
[2026-04-27 04:00:12] 2026-04-27 01:59:30,519 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-27 04:00:12] 2026-04-27 01:59:30,520 | INFO     | ***************************************
[2026-04-27 04:00:12] 2026-04-27 01:59:30,520 | INFO     | 
[2026-04-27 04:00:12] 2026-04-27 01:59:30,525 | INFO     | architecture information:
[2026-04-27 04:00:12] 2026-04-27 01:59:30,525 | INFO     | executing command: cat /etc/os-release
[2026-04-27 04:00:12] 2026-04-27 01:59:30,541 | INFO     | cat /etc/os-release:
[2026-04-27 04:00:12] NAME="CentOS Linux"
[2026-04-27 04:00:12] VERSION="7 (Core)"
[2026-04-27 04:00:12] ID="centos"
[2026-04-27 04:00:12] ID_LIKE="rhel fedora"
[2026-04-27 04:00:12] VERSION_ID="7"
[2026-04-27 04:00:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-27 04:00:12] ANSI_COLOR="0;31"
[2026-04-27 04:00:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-27 04:00:12] HOME_URL="https://www.centos.org/"
[2026-04-27 04:00:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-27 04:00:12] 
[2026-04-27 04:00:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-27 04:00:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-27 04:00:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-27 04:00:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-27 04:00:12] 
[2026-04-27 04:00:12] 2026-04-27 01:59:30,541 | INFO     | ***************************************
[2026-04-27 04:00:12] 2026-04-27 01:59:31,044 | INFO     | executing command: df -mP /var/lib/boinc/var/slot72/slots/22
[2026-04-27 04:00:12] 2026-04-27 01:59:31,060 | INFO     | sufficient remaining disk space (21540896768 B)
[2026-04-27 04:00:12] 2026-04-27 01:59:31,061 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-27 04:00:12] 2026-04-27 01:59:31,061 | INFO     | current server update state: UPDATING_FINAL
[2026-04-27 04:00:12] 2026-04-27 01:59:31,061 | INFO     | update_server=False
[2026-04-27 04:00:12] 2026-04-27 01:59:31,061 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-27 04:00:12] 2026-04-27 01:59:31,061 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-27 04:00:12] 2026-04-27 01:59:31,557 | INFO     | all data control threads have been joined
[2026-04-27 04:00:12] 2026-04-27 01:59:31,793 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-27 04:00:12] 2026-04-27 01:59:31,793 | INFO     | aborting loop
[2026-04-27 04:00:12] 2026-04-27 01:59:31,838 | INFO     | all payload control threads have been joined
[2026-04-27 04:00:12] 2026-04-27 01:59:32,066 | INFO     | [job] retrieve thread has finished
[2026-04-27 04:00:12] 2026-04-27 01:59:32,341 | INFO     | all job control threads have been joined
[2026-04-27 04:00:12] 2026-04-27 01:59:32,412 | INFO     | [payload] execute_payloads thread has finished
[2026-04-27 04:00:12] 2026-04-27 01:59:32,562 | INFO     | [data] control thread has finished
[2026-04-27 04:00:12] 2026-04-27 01:59:32,781 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-27 04:00:12] 2026-04-27 01:59:32,799 | INFO     | [job] job monitor thread has finished
[2026-04-27 04:00:12] 2026-04-27 01:59:32,843 | INFO     | [payload] control thread has finished
[2026-04-27 04:00:12] 2026-04-27 01:59:32,965 | INFO     | [payload] validate_post thread has finished
[2026-04-27 04:00:12] 2026-04-27 01:59:33,066 | INFO     | [data] copytool_out thread has finished
[2026-04-27 04:00:12] 2026-04-27 01:59:33,084 | INFO     | [job] validate thread has finished
[2026-04-27 04:00:12] 2026-04-27 01:59:33,121 | INFO     | [job] create_data_payload thread has finished
[2026-04-27 04:00:12] 2026-04-27 01:59:33,175 | INFO     | [payload] validate_pre thread has finished
[2026-04-27 04:00:12] 2026-04-27 01:59:33,308 | INFO     | [data] copytool_in thread has finished
[2026-04-27 04:00:12] 2026-04-27 01:59:33,346 | INFO     | [job] control thread has finished
[2026-04-27 04:00:12] 2026-04-27 01:59:33,413 | INFO     | [payload] failed_post thread has finished
[2026-04-27 04:00:12] 2026-04-27 01:59:33,767 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-27 04:00:12] 2026-04-27 01:59:34,033 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-27 04:00:12] 2026-04-27 01:59:35,038 | INFO     | [job] queue monitor thread has finished
[2026-04-27 04:00:12] 2026-04-27 01:59:37,772 | INFO     | [data] queue_monitor thread has finished
[2026-04-27 04:00:12] 2026-04-27 02:00:02,348 | INFO     | PID=268572 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-27 04:00:12] 2026-04-27 02:00:02,352 | INFO     | .. there are 16 such processes running
[2026-04-27 04:00:12] 2026-04-27 02:00:02,352 | INFO     | found 0 job(s) in 20 queues
[2026-04-27 04:00:12] 2026-04-27 02:00:02,352 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-27 04:00:12] 2026-04-27 02:00:02,352 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-27 04:00:12] 2026-04-27 02:00:06,281 | INFO     | [monitor] cgroup control has ended
[2026-04-27 04:00:12] 2026-04-27 02:00:07,287 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22419345090368)>', '<ExcThread(monitor, started 22419036444416)>']
[2026-04-27 04:00:12] 2026-04-27 02:00:07,377 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-27 04:00:12] 2026-04-27 02:00:07,377 | INFO     | [monitor] control thread has ended
[2026-04-27 04:00:12] 2026-04-27 02:00:12,291 | INFO     | all workflow threads have been joined
[2026-04-27 04:00:12] 2026-04-27 02:00:12,291 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-27 04:00:12] 2026-04-27 02:00:12,291 | INFO     | traces error code: 0
[2026-04-27 04:00:12] 2026-04-27 02:00:12,291 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-27 04:00:12] 2026-04-27 02:00:12,413 [wrapper] ==== pilot stdout END ====
[2026-04-27 04:00:12] 2026-04-27 02:00:12,416 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-27 04:00:12] 2026-04-27 02:00:12,418 [wrapper] pilotpid: 268572
[2026-04-27 04:00:12] 2026-04-27 02:00:12,420 [wrapper] Pilot exit status: 0
[2026-04-27 04:00:12] 2026-04-27 02:00:12,428 [wrapper] pandaids: 7116189694
[2026-04-27 04:00:12] 2026-04-27 02:00:12,528 [wrapper] cleanup supervisor_pilot  593563 268573
[2026-04-27 04:00:12] 2026-04-27 02:00:12,530 [wrapper] Test setup, not cleaning
[2026-04-27 04:00:12] 2026-04-27 02:00:12,531 [wrapper] apfmon messages muted
[2026-04-27 04:00:12] 2026-04-27 02:00:12,533 [wrapper] ==== wrapper stdout END ====
[2026-04-27 04:00:12] 2026-04-27 02:00:12,534 [wrapper] ==== wrapper stderr END ====
[2026-04-27 04:00:12]  *** Error codes and diagnostics ***
[2026-04-27 04:00:12]     "exeErrorCode": 0,
[2026-04-27 04:00:12]     "pilotErrorCode": 0,
[2026-04-27 04:00:12]  *** Listing of results directory ***
[2026-04-27 04:00:12] total 2462844
[2026-04-27 04:00:12] -rw-r--r--. 1 boinc boinc       5631 Apr 26 23:06 queuedata.json
[2026-04-27 04:00:12] -rw-r--r--. 1 boinc boinc     683926 Apr 26 23:06 pilot3.tar.gz
[2026-04-27 04:00:12] -rwx------. 1 boinc boinc      36322 Apr 26 23:06 runpilot2-wrapper.sh
[2026-04-27 04:00:12] -rw-r--r--. 1 boinc boinc        100 Apr 27 03:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-27 04:00:12] -rwxr-xr-x. 1 boinc boinc       7986 Apr 27 03:06 run_atlas
[2026-04-27 04:00:12] -rw-r--r--. 1 boinc boinc        105 Apr 27 03:06 job.xml
[2026-04-27 04:00:12] -rw-r--r--. 1 boinc boinc       6628 Apr 27 03:06 init_data.xml
[2026-04-27 04:00:12] -rw-r--r--. 2 boinc boinc 2238876406 Apr 27 03:06 EVNT.49820373._000032.pool.root.1
[2026-04-27 04:00:12] -rw-r--r--. 2 boinc boinc      15667 Apr 27 03:06 start_atlas.sh
[2026-04-27 04:00:12] drwxrwx--x. 2 boinc boinc       4096 Apr 27 03:06 shared
[2026-04-27 04:00:12] -rw-r--r--. 2 boinc boinc     697426 Apr 27 03:06 input.tar.gz
[2026-04-27 04:00:12] -rw-r--r--. 1 boinc boinc          0 Apr 27 03:06 boinc_lockfile
[2026-04-27 04:00:12] -rw-r--r--. 1 boinc boinc       2584 Apr 27 03:06 pandaJob.out
[2026-04-27 04:00:12] -rw-------. 1 boinc boinc     997538 Apr 27 03:06 agis_schedconf.cvmfs.json
[2026-04-27 04:00:12] -rw-------. 1 boinc boinc    1509089 Apr 27 03:06 agis_ddmendpoints.agis.ALL.json
[2026-04-27 04:00:12] -rw-------. 1 boinc boinc        443 Apr 27 03:07 workernode_map.json
[2026-04-27 04:00:12] drwx------. 5 boinc boinc       4096 Apr 27 03:07 pilot3
[2026-04-27 04:00:12] -rw-------. 1 boinc boinc  277507554 Apr 27 03:58 HITS.49820375._014395.pool.root.1
[2026-04-27 04:00:12] -rw-r--r--. 1 boinc boinc        488 Apr 27 03:58 boinc_task_state.xml
[2026-04-27 04:00:12] -rw-------. 1 boinc boinc         95 Apr 27 03:59 pilot_heartbeat.json
[2026-04-27 04:00:12] -rw-------. 1 boinc boinc       1031 Apr 27 03:59 memory_monitor_summary.json
[2026-04-27 04:00:12] -rw-------. 1 boinc boinc     380830 Apr 27 03:59 log.49820375._014395.job.log.tgz.1
[2026-04-27 04:00:12] -rw-------. 1 boinc boinc       6374 Apr 27 03:59 heartbeat_new.json
[2026-04-27 04:00:12] -rw-------. 1 boinc boinc       6265 Apr 27 03:59 heartbeat.json
[2026-04-27 04:00:12] -rw-r--r--. 1 boinc boinc       8192 Apr 27 04:00 boinc_mmap_file
[2026-04-27 04:00:12] -rw-r--r--. 1 boinc boinc         27 Apr 27 04:00 wrapper_checkpoint.txt
[2026-04-27 04:00:12] -rw-------. 1 boinc boinc       4832 Apr 27 04:00 pilotlog.txt
[2026-04-27 04:00:12] -rw-------. 1 boinc boinc     336740 Apr 27 04:00 log.49820375._014395.job.log.1
[2026-04-27 04:00:12] -rw-------. 1 boinc boinc        357 Apr 27 04:00 output.list
[2026-04-27 04:00:12] -rw-r--r--. 1 boinc boinc        410 Apr 27 04:00 runtime_log
[2026-04-27 04:00:12] -rw-------. 1 boinc boinc     737280 Apr 27 04:00 result.tar.gz
[2026-04-27 04:00:12] -rw-r--r--. 1 boinc boinc       8846 Apr 27 04:00 runtime_log.err
[2026-04-27 04:00:12] -rw-------. 1 boinc boinc        663 Apr 27 04:00 7e4fe3765fa8.diag
[2026-04-27 04:00:12] -rw-r--r--. 1 boinc boinc      20946 Apr 27 04:00 stderr.txt
[2026-04-27 04:00:12] HITS file was successfully produced:
[2026-04-27 04:00:12] -rw-------. 1 boinc boinc 277507554 Apr 27 03:58 shared/HITS.pool.root.1
[2026-04-27 04:00:12]  *** Contents of shared directory: ***
[2026-04-27 04:00:12] total 2458836
[2026-04-27 04:00:12] -rw-r--r--. 2 boinc boinc 2238876406 Apr 27 03:06 ATLAS.root_0
[2026-04-27 04:00:12] -rw-r--r--. 2 boinc boinc      15667 Apr 27 03:06 start_atlas.sh
[2026-04-27 04:00:12] -rw-r--r--. 2 boinc boinc     697426 Apr 27 03:06 input.tar.gz
[2026-04-27 04:00:12] -rw-------. 1 boinc boinc  277507554 Apr 27 03:58 HITS.pool.root.1
[2026-04-27 04:00:12] -rw-------. 1 boinc boinc     737280 Apr 27 04:00 result.tar.gz
04:00:13 (263975): run_atlas exited; CPU time 34028.577249
04:00:13 (263975): called boinc_finish(0)

</stderr_txt>
]]>

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