Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:36:35 (3709134): wrapper (7.7.26015): starting
03:36:35 (3709134): wrapper: running run_atlas (--nthreads 12)
[2026-04-28 03:36:35] Arguments: --nthreads 12
[2026-04-28 03:36:35] Threads: 12
[2026-04-28 03:36:35] Checking for CVMFS
[2026-04-28 03:36:35] No cvmfs_config command found, will try listing directly
[2026-04-28 03:36:35] CVMFS is ok
[2026-04-28 03:36:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-28 03:36:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-28 03:36:35] Further information can be found at the LHC@home message board.
[2026-04-28 03:36:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-28 03:36:35] Checking for apptainer binary...
[2026-04-28 03:36:35] which: no apptainer in ((null))
[2026-04-28 03:36:35] apptainer is not installed, using version from CVMFS
[2026-04-28 03:36:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-28 03:36:35] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot108/slots/2/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2026-04-28 03:36:35] apptainer works
[2026-04-28 03:36:35] Set ATHENA_PROC_NUMBER=12
[2026-04-28 03:36:35] Set ATHENA_CORE_NUMBER=12
[2026-04-28 03:36:35] Starting ATLAS job with PandaID=7116135741
[2026-04-28 03:36:35] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot108/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-28 04:18:57]  *** The last 200 lines of the pilot log: ***
[2026-04-28 04:18:57]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-28 04:18:57]  replicas=None
[2026-04-28 04:18:57]  scope=mc23_13p6TeV
[2026-04-28 04:18:57]  status=None
[2026-04-28 04:18:57]  status_code=0
[2026-04-28 04:18:57]  storage_token=
[2026-04-28 04:18:57]  surl=/var/lib/boinc/var/slot108/slots/2/PanDA_Pilot-7116135741/log.49863694._001560.job.log.tgz.1
[2026-04-28 04:18:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/12/2b/log.49863694._001560.job.log.tgz.1
[2026-04-28 04:18:57]  workdir=None
[2026-04-28 04:18:57] ]
[2026-04-28 04:18:57] 2026-04-28 02:17:50,253 | INFO     | transferring file log.49863694._001560.job.log.tgz.1 from /var/lib/boinc/var/slot108/slots/2/PanDA_Pilot-7116135741/log.49863694._001560.job.log.tgz.1 to /var/lib/
[2026-04-28 04:18:57] 2026-04-28 02:17:50,253 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot108/slots/2/PanDA_Pilot-7116135741/log.49863694._001560.job.log.tgz.1 /var/lib/boinc/var/slot108/slots/2/
[2026-04-28 04:18:57] 2026-04-28 02:17:50,270 | INFO     | adding to output.list: log.49863694._001560.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/12/2b/log.49863694._001560.job.log.tg
[2026-04-28 04:18:57] 2026-04-28 02:17:50,271 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-28 04:18:57] 2026-04-28 02:17:50,271 | INFO     | summary of transferred files:
[2026-04-28 04:18:57] 2026-04-28 02:17:50,271 | INFO     |  -- lfn=log.49863694._001560.job.log.tgz.1, status_code=0, status=transferred
[2026-04-28 04:18:57] 2026-04-28 02:17:50,271 | INFO     | stage-out finished correctly
[2026-04-28 04:18:57] 2026-04-28 02:17:50,319 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-28 04:18:57] 2026-04-28 02:17:50,365 | INFO     | job 7116135741 has state=finished
[2026-04-28 04:18:57] 2026-04-28 02:17:50,366 | INFO     | preparing for final server update for job 7116135741 in state='finished'
[2026-04-28 04:18:57] 2026-04-28 02:17:50,366 | INFO     | reading metadata from: /var/lib/boinc/var/slot108/slots/2/PanDA_Pilot-7116135741/jobReport.json
[2026-04-28 04:18:57] 2026-04-28 02:17:50,367 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot108/slots/2/workernode_map.json
[2026-04-28 04:18:57] 2026-04-28 02:17:50,368 | INFO     | this job has now completed (state=finished)
[2026-04-28 04:18:57] 2026-04-28 02:17:50,368 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-28 04:18:57] 2026-04-28 02:17:50,368 | INFO     | log transfer has been attempted: DONE
[2026-04-28 04:18:57] 2026-04-28 02:17:50,368 | INFO     | job 7116135741 has finished - writing final server update
[2026-04-28 04:18:57] 2026-04-28 02:17:50,368 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2027216/.job.ad'
[2026-04-28 04:18:57] 2026-04-28 02:17:50,368 | INFO     | total number of processed events: 400 (read)
[2026-04-28 04:18:57] 2026-04-28 02:17:50,386 | INFO     | using path: /var/lib/boinc/var/slot108/slots/2/PanDA_Pilot-7116135741/memory_monitor_summary.json (trf name=prmon)
[2026-04-28 04:18:57] 2026-04-28 02:17:50,386 | INFO     | extracted standard info from prmon json
[2026-04-28 04:18:57] 2026-04-28 02:17:50,386 | INFO     | extracted standard memory fields from prmon json
[2026-04-28 04:18:57] 2026-04-28 02:17:50,386 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-28 04:18:57] 2026-04-28 02:17:50,386 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-28 04:18:57] 2026-04-28 02:17:50,387 | INFO     | fitting pss+swap vs Time
[2026-04-28 04:18:57] 2026-04-28 02:17:50,387 | INFO     | sum of square deviations: 11133232.0
[2026-04-28 04:18:57] 2026-04-28 02:17:50,387 | INFO     | sum of deviations: 112924785.99999997
[2026-04-28 04:18:57] 2026-04-28 02:17:50,387 | INFO     | mean x (centered): 0.0
[2026-04-28 04:18:57] 2026-04-28 02:17:50,387 | INFO     | mean y: 2742603.9696969697
[2026-04-28 04:18:57] 2026-04-28 02:17:50,387 | INFO     | intersect: 2742603.9696969697
[2026-04-28 04:18:57] 2026-04-28 02:17:50,387 | INFO     | chi2: 0.0007123870577845632
[2026-04-28 04:18:57] 2026-04-28 02:17:50,387 | INFO     | current memory leak: 10.14 B/s (using 33 data points, chi2=0.00)
[2026-04-28 04:18:57] 2026-04-28 02:17:50,387 | INFO     | could have reported an average CPU frequency of 3616 MHz (5 samples)
[2026-04-28 04:18:57] 2026-04-28 02:17:50,388 | INFO     | ..............................
[2026-04-28 04:18:57] 2026-04-28 02:17:50,388 | INFO     | . Timing measurements:
[2026-04-28 04:18:57] 2026-04-28 02:17:50,388 | INFO     | . get job = 0 s
[2026-04-28 04:18:57] 2026-04-28 02:17:50,388 | INFO     | . initial setup = 4 s
[2026-04-28 04:18:57] 2026-04-28 02:17:50,388 | INFO     | . payload setup = 6 s
[2026-04-28 04:18:57] 2026-04-28 02:17:50,388 | INFO     | . stage-in = 0 s
[2026-04-28 04:18:57] 2026-04-28 02:17:50,388 | INFO     | . payload execution = 2440 s
[2026-04-28 04:18:57] 2026-04-28 02:17:50,388 | INFO     | . stage-out = 0 s
[2026-04-28 04:18:57] 2026-04-28 02:17:50,388 | INFO     | . log creation = 0 s
[2026-04-28 04:18:57] 2026-04-28 02:17:50,388 | INFO     | ..............................
[2026-04-28 04:18:57] 2026-04-28 02:17:50,435 | INFO     | 
[2026-04-28 04:18:57] 2026-04-28 02:17:50,435 | INFO     | job summary report
[2026-04-28 04:18:57] 2026-04-28 02:17:50,435 | INFO     | --------------------------------------------------
[2026-04-28 04:18:57] 2026-04-28 02:17:50,435 | INFO     | PanDA job id: 7116135741
[2026-04-28 04:18:57] 2026-04-28 02:17:50,435 | INFO     | task id: 49863694
[2026-04-28 04:18:57] 2026-04-28 02:17:50,435 | INFO     | errors: (none)
[2026-04-28 04:18:57] 2026-04-28 02:17:50,435 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-28 04:18:57] 2026-04-28 02:17:50,435 | INFO     | pilot state: finished 
[2026-04-28 04:18:57] 2026-04-28 02:17:50,435 | INFO     | transexitcode: 0
[2026-04-28 04:18:57] 2026-04-28 02:17:50,435 | INFO     | exeerrorcode: 0
[2026-04-28 04:18:57] 2026-04-28 02:17:50,435 | INFO     | exeerrordiag: 
[2026-04-28 04:18:57] 2026-04-28 02:17:50,435 | INFO     | exitcode: 0
[2026-04-28 04:18:57] 2026-04-28 02:17:50,435 | INFO     | exitmsg: OK
[2026-04-28 04:18:57] 2026-04-28 02:17:50,435 | INFO     | cpuconsumptiontime: 26490 s
[2026-04-28 04:18:57] 2026-04-28 02:17:50,435 | INFO     | nevents: 400
[2026-04-28 04:18:57] 2026-04-28 02:17:50,435 | INFO     | neventsw: 0
[2026-04-28 04:18:57] 2026-04-28 02:17:50,435 | INFO     | pid: 3719840
[2026-04-28 04:18:57] 2026-04-28 02:17:50,435 | INFO     | pgrp: 3719840
[2026-04-28 04:18:57] 2026-04-28 02:17:50,435 | INFO     | corecount: 12
[2026-04-28 04:18:57] 2026-04-28 02:17:50,435 | INFO     | event service: False
[2026-04-28 04:18:57] 2026-04-28 02:17:50,435 | INFO     | sizes: {0: 2282530, 11: 2282530, 2450: 2307710, 2451: 2316958}
[2026-04-28 04:18:57] 2026-04-28 02:17:50,435 | INFO     | --------------------------------------------------
[2026-04-28 04:18:57] 2026-04-28 02:17:50,435 | INFO     | 
[2026-04-28 04:18:57] 2026-04-28 02:17:50,435 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot108/slots/2
[2026-04-28 04:18:57] 2026-04-28 02:17:50,456 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-28 04:18:57] 2026-04-28 02:17:50,456 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-28 04:18:57] 2026-04-28 02:17:50,456 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-28 04:18:57] 2026-04-28 02:17:50,456 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-28 04:18:57] 2026-04-28 02:17:50,456 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-28 04:18:57] 2026-04-28 02:17:50,456 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-28 04:18:57] 2026-04-28 02:17:50,456 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-28 04:18:57] 2026-04-28 02:17:50,456 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-28 04:18:57] 2026-04-28 02:17:50,456 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-28 04:18:57] 2026-04-28 02:17:50,456 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-28 04:18:57] 2026-04-28 02:17:50,456 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-28 04:18:57] 2026-04-28 02:17:50,456 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-28 04:18:57] 2026-04-28 02:17:50,456 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-28 04:18:57] 2026-04-28 02:17:50,457 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-28 04:18:57] 2026-04-28 02:17:50,457 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-28 04:18:57] 2026-04-28 02:17:50,457 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-28 04:18:57] 2026-04-28 02:17:50,457 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-28 04:18:57] 2026-04-28 02:17:50,457 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-28 04:18:57] 2026-04-28 02:17:50,457 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-28 04:18:57] 2026-04-28 02:17:50,457 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-28 04:18:57] 2026-04-28 02:17:50,457 | INFO     | job 7116135741 has completed (purged errors)
[2026-04-28 04:18:57] 2026-04-28 02:17:50,457 | INFO     | overall cleanup function is called
[2026-04-28 04:18:57] 2026-04-28 02:17:51,464 | INFO     | --- collectZombieJob: --- 10, [3719840]
[2026-04-28 04:18:57] 2026-04-28 02:17:51,476 | INFO     | zombie collector waiting for pid 3719840
[2026-04-28 04:18:57] 2026-04-28 02:17:51,477 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-28 04:18:57] 2026-04-28 02:17:51,477 | INFO     | collected zombie processes
[2026-04-28 04:18:57] 2026-04-28 02:17:51,477 | INFO     | will attempt to kill all subprocesses of pid=3719840
[2026-04-28 04:18:57] 2026-04-28 02:17:51,542 | WARNING  | process 3719840 can no longer be monitored (due to stat problems) - aborting
[2026-04-28 04:18:57] 2026-04-28 02:17:52,317 | INFO     | process IDs to be killed: [3719840] (in reverse order)
[2026-04-28 04:18:57] 2026-04-28 02:17:52,323 | INFO     | using path: /var/lib/boinc/var/slot108/slots/2/memory_monitor_summary.json (trf name=prmon)
[2026-04-28 04:18:57] 2026-04-28 02:17:52,324 | INFO     | using path: /var/lib/boinc/var/slot108/slots/2/memory_monitor_summary.json (trf name=prmon)
[2026-04-28 04:18:57] 2026-04-28 02:17:52,324 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-04-28 04:18:57] 2026-04-28 02:17:52,325 | WARNING  | maxPSS not found in memory monitor output
[2026-04-28 04:18:57] 2026-04-28 02:17:52,325 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot108/slots/2/PanDA_Pilot-7116135741/payload.stdout) since it has not been created yet
[2026-04-28 04:18:57] 2026-04-28 02:17:52,325 | INFO     | executing command: df -mP /var/lib/boinc/var/slot108/slots/2
[2026-04-28 04:18:57] 2026-04-28 02:17:52,343 | INFO     | sufficient remaining disk space (18023972864 B)
[2026-04-28 04:18:57] 2026-04-28 02:17:52,343 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-04-28 04:18:57] 2026-04-28 02:17:52,343 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot108/slots/2/PanDA_Pilot-7116135741/HITS.49863694._001560.pool.root.1 since it does not exist
[2026-04-28 04:18:57] 2026-04-28 02:17:52,472 | WARNING  | found no corresponding commands to process id(s)
[2026-04-28 04:18:57] 2026-04-28 02:17:52,472 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-28 04:18:57] 2026-04-28 02:17:52,523 | INFO     | did not find any defunct processes belonging to 3719840
[2026-04-28 04:18:57] 2026-04-28 02:17:52,565 | INFO     | did not find any defunct processes belonging to 3719840
[2026-04-28 04:18:57] 2026-04-28 02:17:52,565 | INFO     | Ready for new job
[2026-04-28 04:18:57] 2026-04-28 02:17:52,566 | INFO     | ***************************************
[2026-04-28 04:18:57] 2026-04-28 02:17:52,566 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-28 04:18:57] 2026-04-28 02:17:52,566 | INFO     | ***************************************
[2026-04-28 04:18:57] 2026-04-28 02:17:52,566 | INFO     | 
[2026-04-28 04:18:57] 2026-04-28 02:17:52,572 | INFO     | architecture information:
[2026-04-28 04:18:57] 2026-04-28 02:17:52,573 | INFO     | executing command: cat /etc/os-release
[2026-04-28 04:18:57] 2026-04-28 02:17:52,586 | INFO     | cat /etc/os-release:
[2026-04-28 04:18:57] NAME="CentOS Linux"
[2026-04-28 04:18:57] VERSION="7 (Core)"
[2026-04-28 04:18:57] ID="centos"
[2026-04-28 04:18:57] ID_LIKE="rhel fedora"
[2026-04-28 04:18:57] VERSION_ID="7"
[2026-04-28 04:18:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-28 04:18:57] ANSI_COLOR="0;31"
[2026-04-28 04:18:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-28 04:18:57] HOME_URL="https://www.centos.org/"
[2026-04-28 04:18:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-28 04:18:57] 
[2026-04-28 04:18:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-28 04:18:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-28 04:18:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-28 04:18:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-28 04:18:57] 
[2026-04-28 04:18:57] 2026-04-28 02:17:52,586 | INFO     | ***************************************
[2026-04-28 04:18:57] 2026-04-28 02:17:52,706 | INFO     | number of running child processes to parent process 3719840: 1
[2026-04-28 04:18:57] 2026-04-28 02:17:52,707 | INFO     | maximum number of monitored processes: 6
[2026-04-28 04:18:57] 2026-04-28 02:17:52,707 | INFO     | aborting job monitoring since job object (job id=7116135741) has expired
[2026-04-28 04:18:57] 2026-04-28 02:17:53,089 | INFO     | executing command: df -mP /var/lib/boinc/var/slot108/slots/2
[2026-04-28 04:18:57] 2026-04-28 02:17:53,107 | INFO     | sufficient remaining disk space (18023972864 B)
[2026-04-28 04:18:57] 2026-04-28 02:17:53,107 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-28 04:18:57] 2026-04-28 02:17:53,107 | INFO     | current server update state: UPDATING_FINAL
[2026-04-28 04:18:57] 2026-04-28 02:17:53,107 | INFO     | update_server=False
[2026-04-28 04:18:57] 2026-04-28 02:17:53,107 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-28 04:18:57] 2026-04-28 02:17:53,107 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-28 04:18:57] 2026-04-28 02:17:53,107 | INFO     | will abort loop
[2026-04-28 04:18:57] 2026-04-28 02:17:53,160 | INFO     | all data control threads have been joined
[2026-04-28 04:18:57] 2026-04-28 02:17:53,325 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-28 04:18:57] 2026-04-28 02:17:54,112 | INFO     | [job] retrieve thread has finished
[2026-04-28 04:18:57] 2026-04-28 02:17:54,114 | INFO     | [job] job monitor thread has finished
[2026-04-28 04:18:57] 2026-04-28 02:17:54,166 | INFO     | [data] control thread has finished
[2026-04-28 04:18:57] 2026-04-28 02:17:54,249 | INFO     | [payload] validate_pre thread has finished
[2026-04-28 04:18:57] 2026-04-28 02:17:54,377 | INFO     | [data] copytool_in thread has finished
[2026-04-28 04:18:57] 2026-04-28 02:17:54,566 | INFO     | all payload control threads have been joined
[2026-04-28 04:18:57] 2026-04-28 02:17:54,626 | INFO     | [payload] execute_payloads thread has finished
[2026-04-28 04:18:57] 2026-04-28 02:17:54,666 | INFO     | all job control threads have been joined
[2026-04-28 04:18:57] 2026-04-28 02:17:54,790 | INFO     | [payload] failed_post thread has finished
[2026-04-28 04:18:57] 2026-04-28 02:17:55,303 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-28 04:18:57] 2026-04-28 02:17:55,332 | INFO     | [data] copytool_out thread has finished
[2026-04-28 04:18:57] 2026-04-28 02:17:55,391 | INFO     | [payload] validate_post thread has finished
[2026-04-28 04:18:57] 2026-04-28 02:17:55,445 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-28 04:18:57] 2026-04-28 02:17:55,502 | INFO     | [job] validate thread has finished
[2026-04-28 04:18:57] 2026-04-28 02:17:55,538 | INFO     | [job] create_data_payload thread has finished
[2026-04-28 04:18:57] 2026-04-28 02:17:55,572 | INFO     | [payload] control thread has finished
[2026-04-28 04:18:57] 2026-04-28 02:17:55,672 | INFO     | [job] control thread has finished
[2026-04-28 04:18:57] 2026-04-28 02:17:56,374 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-28 04:18:57] 2026-04-28 02:17:56,451 | INFO     | [job] queue monitor thread has finished
[2026-04-28 04:18:57] 2026-04-28 02:18:00,382 | INFO     | [data] queue_monitor thread has finished
[2026-04-28 04:18:57] 2026-04-28 02:18:21,214 | INFO     | 2467s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-04-28 04:18:57] 2026-04-28 02:18:22,686 | INFO     | PID=3713998 has CPU usage=9.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-28 04:18:57] 2026-04-28 02:18:22,686 | INFO     | .. there are 15 such processes running
[2026-04-28 04:18:57] 2026-04-28 02:18:22,686 | INFO     | found 0 job(s) in 20 queues
[2026-04-28 04:18:57] 2026-04-28 02:18:22,686 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-28 04:18:57] 2026-04-28 02:18:22,686 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-28 04:18:57] 2026-04-28 02:18:51,672 | INFO     | [monitor] cgroup control has ended
[2026-04-28 04:18:57] 2026-04-28 02:18:52,423 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23014605641536)>', '<ExcThread(monitor, started 23014303311616)>']
[2026-04-28 04:18:57] 2026-04-28 02:18:52,816 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-28 04:18:57] 2026-04-28 02:18:52,817 | INFO     | [monitor] control thread has ended
[2026-04-28 04:18:57] 2026-04-28 02:18:57,449 | INFO     | all workflow threads have been joined
[2026-04-28 04:18:57] 2026-04-28 02:18:57,450 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-28 04:18:57] 2026-04-28 02:18:57,450 | INFO     | traces error code: 0
[2026-04-28 04:18:57] 2026-04-28 02:18:57,450 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-28 04:18:57] 2026-04-28 02:18:57,615 [wrapper] ==== pilot stdout END ====
[2026-04-28 04:18:57] 2026-04-28 02:18:57,617 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-28 04:18:57] 2026-04-28 02:18:57,620 [wrapper] pilotpid: 3713998
[2026-04-28 04:18:57] 2026-04-28 02:18:57,622 [wrapper] Pilot exit status: 0
[2026-04-28 04:18:57] 2026-04-28 02:18:57,630 [wrapper] pandaids: 7116135741
[2026-04-28 04:18:57] 2026-04-28 02:18:57,734 [wrapper] cleanup supervisor_pilot 3914054 3713999
[2026-04-28 04:18:57] 2026-04-28 02:18:57,737 [wrapper] Test setup, not cleaning
[2026-04-28 04:18:57] 2026-04-28 02:18:57,739 [wrapper] apfmon messages muted
[2026-04-28 04:18:57] 2026-04-28 02:18:57,741 [wrapper] ==== wrapper stdout END ====
[2026-04-28 04:18:57] 2026-04-28 02:18:57,743 [wrapper] ==== wrapper stderr END ====
[2026-04-28 04:18:57]  *** Error codes and diagnostics ***
[2026-04-28 04:18:57]     "exeErrorCode": 0,
[2026-04-28 04:18:57]     "pilotErrorCode": 0,
[2026-04-28 04:18:57]  *** Listing of results directory ***
[2026-04-28 04:18:57] total 470392
[2026-04-28 04:18:57] -rw-r--r--. 1 boinc boinc    683926 Apr 26 19:05 pilot3.tar.gz
[2026-04-28 04:18:57] -rwx------. 1 boinc boinc     36322 Apr 26 19:27 runpilot2-wrapper.sh
[2026-04-28 04:18:57] -rw-r--r--. 1 boinc boinc      5631 Apr 26 19:30 queuedata.json
[2026-04-28 04:18:57] -rw-r--r--. 1 boinc boinc       100 Apr 28 03:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-28 04:18:57] -rwxr-xr-x. 1 boinc boinc      7986 Apr 28 03:36 run_atlas
[2026-04-28 04:18:57] -rw-r--r--. 1 boinc boinc       105 Apr 28 03:36 job.xml
[2026-04-28 04:18:57] drwxrwx--x. 2 boinc boinc      4096 Apr 28 03:36 shared
[2026-04-28 04:18:57] -rw-r--r--. 2 boinc boinc    697411 Apr 28 03:36 input.tar.gz
[2026-04-28 04:18:57] -rw-r--r--. 1 boinc boinc      6630 Apr 28 03:36 init_data.xml
[2026-04-28 04:18:57] -rw-r--r--. 2 boinc boinc 261741097 Apr 28 03:36 EVNT.49863691._000063.pool.root.1
[2026-04-28 04:18:57] -rw-r--r--. 2 boinc boinc     15667 Apr 28 03:36 start_atlas.sh
[2026-04-28 04:18:57] -rw-r--r--. 1 boinc boinc         0 Apr 28 03:36 boinc_lockfile
[2026-04-28 04:18:57] -rw-r--r--. 1 boinc boinc      2580 Apr 28 03:36 pandaJob.out
[2026-04-28 04:18:57] -rw-------. 1 boinc boinc    997422 Apr 28 03:36 agis_schedconf.cvmfs.json
[2026-04-28 04:18:57] -rw-------. 1 boinc boinc   1512704 Apr 28 03:36 agis_ddmendpoints.agis.ALL.json
[2026-04-28 04:18:57] -rw-------. 1 boinc boinc       445 Apr 28 03:36 workernode_map.json
[2026-04-28 04:18:57] drwx------. 5 boinc boinc      4096 Apr 28 03:36 pilot3
[2026-04-28 04:18:57] -rw-------. 1 boinc boinc 214581940 Apr 28 04:17 HITS.49863694._001560.pool.root.1
[2026-04-28 04:18:57] -rw-r--r--. 1 boinc boinc       487 Apr 28 04:17 boinc_task_state.xml
[2026-04-28 04:18:57] -rw-------. 1 boinc boinc        95 Apr 28 04:17 pilot_heartbeat.json
[2026-04-28 04:18:57] -rw-------. 1 boinc boinc      1030 Apr 28 04:17 memory_monitor_summary.json
[2026-04-28 04:18:57] -rw-------. 1 boinc boinc    334222 Apr 28 04:17 log.49863694._001560.job.log.tgz.1
[2026-04-28 04:18:57] -rw-------. 1 boinc boinc      6371 Apr 28 04:17 heartbeat_new.json
[2026-04-28 04:18:57] -rw-------. 1 boinc boinc      6262 Apr 28 04:17 heartbeat.json
[2026-04-28 04:18:57] -rw-r--r--. 1 boinc boinc      8192 Apr 28 04:18 boinc_mmap_file
[2026-04-28 04:18:57] -rw-r--r--. 1 boinc boinc        27 Apr 28 04:18 wrapper_checkpoint.txt
[2026-04-28 04:18:57] -rw-------. 1 boinc boinc      5238 Apr 28 04:18 pilotlog.txt
[2026-04-28 04:18:57] -rw-------. 1 boinc boinc    276114 Apr 28 04:18 log.49863694._001560.job.log.1
[2026-04-28 04:18:57] -rw-------. 1 boinc boinc       357 Apr 28 04:18 output.list
[2026-04-28 04:18:57] -rw-r--r--. 1 boinc boinc       410 Apr 28 04:18 runtime_log
[2026-04-28 04:18:57] -rw-------. 1 boinc boinc    624640 Apr 28 04:18 result.tar.gz
[2026-04-28 04:18:57] -rw-r--r--. 1 boinc boinc      8846 Apr 28 04:18 runtime_log.err
[2026-04-28 04:18:57] -rw-------. 1 boinc boinc       663 Apr 28 04:18 4b06d549d936.diag
[2026-04-28 04:18:57] -rw-r--r--. 1 boinc boinc     21932 Apr 28 04:18 stderr.txt
[2026-04-28 04:18:57] HITS file was successfully produced:
[2026-04-28 04:18:57] -rw-------. 1 boinc boinc 214581940 Apr 28 04:17 shared/HITS.pool.root.1
[2026-04-28 04:18:57]  *** Contents of shared directory: ***
[2026-04-28 04:18:57] total 466484
[2026-04-28 04:18:57] -rw-r--r--. 2 boinc boinc    697411 Apr 28 03:36 input.tar.gz
[2026-04-28 04:18:57] -rw-r--r--. 2 boinc boinc 261741097 Apr 28 03:36 ATLAS.root_0
[2026-04-28 04:18:57] -rw-r--r--. 2 boinc boinc     15667 Apr 28 03:36 start_atlas.sh
[2026-04-28 04:18:57] -rw-------. 1 boinc boinc 214581940 Apr 28 04:17 HITS.pool.root.1
[2026-04-28 04:18:57] -rw-------. 1 boinc boinc    624640 Apr 28 04:18 result.tar.gz
04:18:59 (3709134): run_atlas exited; CPU time 26559.539748
04:18:59 (3709134): called boinc_finish(0)

</stderr_txt>
]]>

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