Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:00:17 (641410): wrapper (7.7.26015): starting
05:00:17 (641410): wrapper: running run_atlas (--nthreads 4)
[2026-04-27 05:00:17] Arguments: --nthreads 4
[2026-04-27 05:00:17] Threads: 4
[2026-04-27 05:00:17] Checking for CVMFS
[2026-04-27 05:00:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-27 05:00:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-27 05:00:18] Running cvmfs_config stat atlas.cern.ch
[2026-04-27 05:00:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-27 05:00:18] 2.9.2.0 520919 670 71884 158911 3 50 34821425 36864000 0 130560 0 439610 99.989 23932 15891 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-27 05:00:18] CVMFS is ok
[2026-04-27 05:00:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-27 05:00:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-27 05:00:18] Further information can be found at the LHC@home message board.
[2026-04-27 05:00:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-27 05:00:18] Checking for apptainer binary...
[2026-04-27 05:00:18] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-27 05:00:18] Running /usr/bin/apptainer --version
[2026-04-27 05:00:18] apptainer version 1.4.1-1.1
[2026-04-27 05:00:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-27 05:00:18] thA309
[2026-04-27 05:00:18] apptainer works
[2026-04-27 05:00:18] Set ATHENA_PROC_NUMBER=4
[2026-04-27 05:00:18] Set ATHENA_CORE_NUMBER=4
[2026-04-27 05:00:18] Starting ATLAS job with PandaID=7116175895
[2026-04-27 05:00:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-27 06:27:45]  *** The last 200 lines of the pilot log: ***
[2026-04-27 06:27:45] 2026-04-27 04:27:13,346 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-27 06:27:45] 2026-04-27 04:27:13,346 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-27 06:27:45] 2026-04-27 04:27:13,346 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-27 06:27:45] 2026-04-27 04:27:13,346 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-27 06:27:45] 2026-04-27 04:27:13,346 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-27 06:27:45] 2026-04-27 04:27:13,346 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-27 06:27:45] 2026-04-27 04:27:13,346 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-27 06:27:45] 2026-04-27 04:27:13,346 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-27 06:27:45] 2026-04-27 04:27:13,347 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-27 06:27:45] 2026-04-27 04:27:13,347 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-27 06:27:45] 2026-04-27 04:27:13,347 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-27 06:27:45] 2026-04-27 04:27:13,347 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-27 06:27:45] 2026-04-27 04:27:13,347 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-27 06:27:45] 2026-04-27 04:27:13,347 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-27 06:27:45] 2026-04-27 04:27:13,347 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-27 06:27:45] 2026-04-27 04:27:13,347 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-27 06:27:45] 2026-04-27 04:27:13,347 | INFO     | job 7116175895 has completed (purged errors)
[2026-04-27 06:27:45] 2026-04-27 04:27:13,347 | INFO     | overall cleanup function is called
[2026-04-27 06:27:45] 2026-04-27 04:27:14,354 | INFO     | --- collectZombieJob: --- 10, [650055]
[2026-04-27 06:27:45] 2026-04-27 04:27:14,354 | INFO     | zombie collector waiting for pid 650055
[2026-04-27 06:27:45] 2026-04-27 04:27:14,355 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-27 06:27:45] 2026-04-27 04:27:14,355 | INFO     | collected zombie processes
[2026-04-27 06:27:45] 2026-04-27 04:27:14,355 | INFO     | will attempt to kill all subprocesses of pid=650055
[2026-04-27 06:27:45] 2026-04-27 04:27:14,395 | INFO     | process IDs to be killed: [650055] (in reverse order)
[2026-04-27 06:27:45] 2026-04-27 04:27:14,432 | WARNING  | found no corresponding commands to process id(s)
[2026-04-27 06:27:45] 2026-04-27 04:27:14,432 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-27 06:27:45] 2026-04-27 04:27:14,434 | INFO     | did not find any defunct processes belonging to 650055
[2026-04-27 06:27:45] 2026-04-27 04:27:14,436 | INFO     | did not find any defunct processes belonging to 650055
[2026-04-27 06:27:45] 2026-04-27 04:27:14,436 | INFO     | Ready for new job
[2026-04-27 06:27:45] 2026-04-27 04:27:14,437 | INFO     | ***************************************
[2026-04-27 06:27:45] 2026-04-27 04:27:14,437 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-27 06:27:45] 2026-04-27 04:27:14,437 | INFO     | ***************************************
[2026-04-27 06:27:45] 2026-04-27 04:27:14,437 | INFO     | 
[2026-04-27 06:27:45] 2026-04-27 04:27:14,437 | INFO     | architecture information:
[2026-04-27 06:27:45] 2026-04-27 04:27:14,437 | INFO     | executing command: cat /etc/os-release
[2026-04-27 06:27:45] 2026-04-27 04:27:14,452 | INFO     | cat /etc/os-release:
[2026-04-27 06:27:45] NAME="CentOS Linux"
[2026-04-27 06:27:45] VERSION="7 (Core)"
[2026-04-27 06:27:45] ID="centos"
[2026-04-27 06:27:45] ID_LIKE="rhel fedora"
[2026-04-27 06:27:45] VERSION_ID="7"
[2026-04-27 06:27:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-27 06:27:45] ANSI_COLOR="0;31"
[2026-04-27 06:27:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-27 06:27:45] HOME_URL="https://www.centos.org/"
[2026-04-27 06:27:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-27 06:27:45] 
[2026-04-27 06:27:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-27 06:27:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-27 06:27:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-27 06:27:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-27 06:27:45] 
[2026-04-27 06:27:45] 2026-04-27 04:27:14,452 | INFO     | ***************************************
[2026-04-27 06:27:45] 2026-04-27 04:27:14,955 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-27 06:27:45] 2026-04-27 04:27:14,974 | INFO     | sufficient remaining disk space (212046184448 B)
[2026-04-27 06:27:45] 2026-04-27 04:27:14,974 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-27 06:27:45] 2026-04-27 04:27:14,974 | INFO     | current server update state: UPDATING_FINAL
[2026-04-27 06:27:45] 2026-04-27 04:27:14,974 | INFO     | update_server=False
[2026-04-27 06:27:45] 2026-04-27 04:27:14,974 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-27 06:27:45] 2026-04-27 04:27:14,975 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-27 06:27:45] 2026-04-27 04:27:14,975 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-27 06:27:45] 2026-04-27 04:27:15,056 | INFO     | all data control threads have been joined
[2026-04-27 06:27:45] 2026-04-27 04:27:15,836 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-27 06:27:45] 2026-04-27 04:27:15,837 | INFO     | aborting loop
[2026-04-27 06:27:45] 2026-04-27 04:27:15,873 | INFO     | all payload control threads have been joined
[2026-04-27 06:27:45] 2026-04-27 04:27:15,980 | INFO     | [job] retrieve thread has finished
[2026-04-27 06:27:45] 2026-04-27 04:27:15,980 | INFO     | [job] queue monitor thread has finished
[2026-04-27 06:27:45] 2026-04-27 04:27:16,062 | INFO     | [data] control thread has finished
[2026-04-27 06:27:45] 2026-04-27 04:27:16,077 | INFO     | all job control threads have been joined
[2026-04-27 06:27:45] 2026-04-27 04:27:16,509 | INFO     | [payload] execute_payloads thread has finished
[2026-04-27 06:27:45] 2026-04-27 04:27:16,589 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-27 06:27:45] 2026-04-27 04:27:16,613 | INFO     | [payload] failed_post thread has finished
[2026-04-27 06:27:45] 2026-04-27 04:27:16,842 | INFO     | [job] job monitor thread has finished
[2026-04-27 06:27:45] 2026-04-27 04:27:16,879 | INFO     | [payload] control thread has finished
[2026-04-27 06:27:45] 2026-04-27 04:27:16,941 | INFO     | [job] validate thread has finished
[2026-04-27 06:27:45] 2026-04-27 04:27:16,981 | INFO     | [data] copytool_out thread has finished
[2026-04-27 06:27:45] 2026-04-27 04:27:17,063 | INFO     | [job] create_data_payload thread has finished
[2026-04-27 06:27:45] 2026-04-27 04:27:17,083 | INFO     | [job] control thread has finished
[2026-04-27 06:27:45] 2026-04-27 04:27:17,109 | INFO     | [payload] validate_pre thread has finished
[2026-04-27 06:27:45] 2026-04-27 04:27:17,159 | INFO     | [payload] validate_post thread has finished
[2026-04-27 06:27:45] 2026-04-27 04:27:17,272 | INFO     | [data] copytool_in thread has finished
[2026-04-27 06:27:45] 2026-04-27 04:27:20,595 | INFO     | [data] queue_monitor thread has finished
[2026-04-27 06:27:45] 2026-04-27 04:27:25,749 | INFO     | job.realtimelogging is not enabled
[2026-04-27 06:27:45] 2026-04-27 04:27:26,755 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-27 06:27:45] 2026-04-27 04:27:38,037 | INFO     | [monitor] cgroup control has ended
[2026-04-27 06:27:45] 2026-04-27 04:27:39,987 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140412594345792)>', '<ExcThread(monitor, started 140411666425600)>']
[2026-04-27 06:27:45] 2026-04-27 04:27:45,004 | INFO     | all workflow threads have been joined
[2026-04-27 06:27:45] 2026-04-27 04:27:45,004 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-27 06:27:45] 2026-04-27 04:27:45,005 | INFO     | traces error code: 0
[2026-04-27 06:27:45] 2026-04-27 04:27:45,005 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-27 06:27:45] 2026-04-27 04:27:45,161 | INFO     | PID=645531 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-27 06:27:45] 2026-04-27 04:27:45,162 | INFO     | found 0 job(s) in 20 queues
[2026-04-27 06:27:45] 2026-04-27 04:27:45,162 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-27 06:27:45] 2026-04-27 04:27:45,162 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-27 06:27:45] 2026-04-27 04:27:45,162 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-27 06:27:45] 2026-04-27 04:27:45,162 | INFO     | [monitor] control thread has ended
[2026-04-27 06:27:45] 2026-04-27 04:27:45,239 [wrapper] ==== pilot stdout END ====
[2026-04-27 06:27:45] 2026-04-27 04:27:45,243 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-27 06:27:45] 2026-04-27 04:27:45,247 [wrapper] pilotpid: 645531
[2026-04-27 06:27:45] 2026-04-27 04:27:45,252 [wrapper] Pilot exit status: 0
[2026-04-27 06:27:45] 2026-04-27 04:27:45,264 [wrapper] pandaids: 7116175895
[2026-04-27 06:27:45] 2026-04-27 04:27:45,288 [wrapper] cleanup supervisor_pilot  655926 645532
[2026-04-27 06:27:45] 2026-04-27 04:27:45,292 [wrapper] Test setup, not cleaning
[2026-04-27 06:27:45] 2026-04-27 04:27:45,296 [wrapper] apfmon messages muted
[2026-04-27 06:27:45] 2026-04-27 04:27:45,300 [wrapper] ==== wrapper stdout END ====
[2026-04-27 06:27:45] 2026-04-27 04:27:45,304 [wrapper] ==== wrapper stderr END ====
[2026-04-27 06:27:45]  *** Error codes and diagnostics ***
[2026-04-27 06:27:45]     "exeErrorCode": 0,
[2026-04-27 06:27:45]     "pilotErrorCode": 0,
[2026-04-27 06:27:45]  *** Listing of results directory ***
[2026-04-27 06:27:45] total 1348100
[2026-04-27 06:27:45] -rwx------ 1 boinc boinc      36322 Apr 26 21:32 runpilot2-wrapper.sh
[2026-04-27 06:27:45] -rw-r--r-- 1 boinc boinc       5631 Apr 26 21:34 queuedata.json
[2026-04-27 06:27:45] -rw-r--r-- 1 boinc boinc     683926 Apr 26 21:34 pilot3.tar.gz
[2026-04-27 06:27:45] -rw-r--r-- 1 boinc boinc        100 Apr 27 05:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-27 06:27:45] -rwxr-xr-x 1 boinc boinc       7986 Apr 27 05:00 run_atlas
[2026-04-27 06:27:45] -rw-r--r-- 1 boinc boinc        105 Apr 27 05:00 job.xml
[2026-04-27 06:27:45] -rw-r--r-- 2 boinc boinc 1160561668 Apr 27 05:00 EVNT.49912842._000003.pool.root.1
[2026-04-27 06:27:45] -rw-r--r-- 2 boinc boinc     697426 Apr 27 05:00 input.tar.gz
[2026-04-27 06:27:45] -rw-r--r-- 2 boinc boinc      15667 Apr 27 05:00 start_atlas.sh
[2026-04-27 06:27:45] drwxrwx--x 2 boinc boinc       4096 Apr 27 05:00 shared
[2026-04-27 06:27:45] -rw-r--r-- 1 boinc boinc          0 Apr 27 05:00 boinc_setup_complete
[2026-04-27 06:27:45] -rw-r--r-- 1 boinc boinc       6292 Apr 27 05:00 init_data.xml
[2026-04-27 06:27:45] -rw-r--r-- 1 boinc boinc          0 Apr 27 05:00 boinc_lockfile
[2026-04-27 06:27:45] -rw-r--r-- 1 boinc boinc       2615 Apr 27 05:00 pandaJob.out
[2026-04-27 06:27:45] -rw------- 1 boinc boinc     997530 Apr 27 05:00 agis_schedconf.cvmfs.json
[2026-04-27 06:27:45] -rw------- 1 boinc boinc    1509089 Apr 27 05:00 agis_ddmendpoints.agis.ALL.json
[2026-04-27 06:27:45] -rw------- 1 boinc boinc        421 Apr 27 05:00 workernode_map.json
[2026-04-27 06:27:45] drwx------ 5 boinc boinc       4096 Apr 27 05:00 pilot3
[2026-04-27 06:27:45] -rw------- 1 boinc boinc  214087452 Apr 27 06:26 HITS.49912847._000289.pool.root.1
[2026-04-27 06:27:45] -rw-r--r-- 1 boinc boinc        488 Apr 27 06:26 boinc_task_state.xml
[2026-04-27 06:27:45] -rw------- 1 boinc boinc         95 Apr 27 06:26 pilot_heartbeat.json
[2026-04-27 06:27:45] -rw------- 1 boinc boinc       1024 Apr 27 06:27 memory_monitor_summary.json
[2026-04-27 06:27:45] -rw------- 1 boinc boinc     334651 Apr 27 06:27 log.49912847._000289.job.log.tgz.1
[2026-04-27 06:27:45] -rw------- 1 boinc boinc       6322 Apr 27 06:27 heartbeat_new.json
[2026-04-27 06:27:45] -rw------- 1 boinc boinc       6213 Apr 27 06:27 heartbeat.json
[2026-04-27 06:27:45] -rw-r--r-- 1 boinc boinc       8192 Apr 27 06:27 boinc_mmap_file
[2026-04-27 06:27:45] -rw-r--r-- 1 boinc boinc         27 Apr 27 06:27 wrapper_checkpoint.txt
[2026-04-27 06:27:45] -rw------- 1 boinc boinc        746 Apr 27 06:27 pilotlog.txt
[2026-04-27 06:27:45] -rw------- 1 boinc boinc     506498 Apr 27 06:27 log.49912847._000289.job.log.1
[2026-04-27 06:27:45] -rw------- 1 boinc boinc        357 Apr 27 06:27 output.list
[2026-04-27 06:27:45] -rw-r--r-- 1 boinc boinc        410 Apr 27 06:27 runtime_log
[2026-04-27 06:27:45] -rw------- 1 boinc boinc     860160 Apr 27 06:27 result.tar.gz
[2026-04-27 06:27:45] -rw-r--r-- 1 boinc boinc       8519 Apr 27 06:27 runtime_log.err
[2026-04-27 06:27:45] -rw------- 1 boinc boinc        657 Apr 27 06:27 684d23b275d3.diag
[2026-04-27 06:27:45] -rw-r--r-- 1 boinc boinc      12316 Apr 27 06:27 stderr.txt
[2026-04-27 06:27:45] HITS file was successfully produced:
[2026-04-27 06:27:45] -rw------- 1 boinc boinc 214087452 Apr 27 06:26 shared/HITS.pool.root.1
[2026-04-27 06:27:45]  *** Contents of shared directory: ***
[2026-04-27 06:27:45] total 1343984
[2026-04-27 06:27:45] -rw-r--r-- 2 boinc boinc 1160561668 Apr 27 05:00 ATLAS.root_0
[2026-04-27 06:27:45] -rw-r--r-- 2 boinc boinc     697426 Apr 27 05:00 input.tar.gz
[2026-04-27 06:27:45] -rw-r--r-- 2 boinc boinc      15667 Apr 27 05:00 start_atlas.sh
[2026-04-27 06:27:45] -rw------- 1 boinc boinc  214087452 Apr 27 06:26 HITS.pool.root.1
[2026-04-27 06:27:45] -rw------- 1 boinc boinc     860160 Apr 27 06:27 result.tar.gz
06:27:46 (641410): run_atlas exited; CPU time 18814.930024
06:27:46 (641410): called boinc_finish(0)

</stderr_txt>
]]>

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