Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:42:18 (3859182): wrapper (7.7.26015): starting
05:42:18 (3859182): wrapper: running run_atlas (--nthreads 12)
[2026-04-27 05:42:18] Arguments: --nthreads 12
[2026-04-27 05:42:18] Threads: 12
[2026-04-27 05:42:18] Checking for CVMFS
[2026-04-27 05:42:18] No cvmfs_config command found, will try listing directly
[2026-04-27 05:42:18] CVMFS is ok
[2026-04-27 05:42:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-27 05:42:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-27 05:42:18] Further information can be found at the LHC@home message board.
[2026-04-27 05:42:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-27 05:42:18] Checking for apptainer binary...
[2026-04-27 05:42:18] which: no apptainer in ((null))
[2026-04-27 05:42:18] apptainer is not installed, using version from CVMFS
[2026-04-27 05:42:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-27 05:42:18] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot72/slots/21/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2026-04-27 05:42:18] apptainer works
[2026-04-27 05:42:18] Set ATHENA_PROC_NUMBER=12
[2026-04-27 05:42:18] Set ATHENA_CORE_NUMBER=12
[2026-04-27 05:42:18] Starting ATLAS job with PandaID=7116175046
[2026-04-27 05:42:18] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot72/slots/21 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-27 06:17:38]  *** The last 200 lines of the pilot log: ***
[2026-04-27 06:17:38]  filesize=431881
[2026-04-27 06:17:38]  filetype=log
[2026-04-27 06:17:38]  guid=f6d20c25-6936-48e1-b014-3c96e34df111
[2026-04-27 06:17:38]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-04-27 06:17:38]  is_altstaged=None
[2026-04-27 06:17:38]  is_tar=False
[2026-04-27 06:17:38]  lfn=log.49912847._000196.job.log.tgz.1
[2026-04-27 06:17:38]  mtime=0
[2026-04-27 06:17:38]  protocol_id=None
[2026-04-27 06:17:38]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-27 06:17:38]  replicas=None
[2026-04-27 06:17:38]  scope=mc23_13p6TeV
[2026-04-27 06:17:38]  status=None
[2026-04-27 06:17:38]  status_code=0
[2026-04-27 06:17:38]  storage_token=
[2026-04-27 06:17:38]  surl=/var/lib/boinc/var/slot72/slots/21/PanDA_Pilot-7116175046/log.49912847._000196.job.log.tgz.1
[2026-04-27 06:17:38]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/03/6d/log.49912847._000196.job.log.tgz.1
[2026-04-27 06:17:38]  workdir=None
[2026-04-27 06:17:38] ]
[2026-04-27 06:17:38] 2026-04-27 04:16:48,783 | INFO     | transferring file log.49912847._000196.job.log.tgz.1 from /var/lib/boinc/var/slot72/slots/21/PanDA_Pilot-7116175046/log.49912847._000196.job.log.tgz.1 to /var/lib/
[2026-04-27 06:17:38] 2026-04-27 04:16:48,784 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot72/slots/21/PanDA_Pilot-7116175046/log.49912847._000196.job.log.tgz.1 /var/lib/boinc/var/slot72/slots/21/
[2026-04-27 06:17:38] 2026-04-27 04:16:48,800 | INFO     | adding to output.list: log.49912847._000196.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/03/6d/log.49912847._000196.job.log.tg
[2026-04-27 06:17:38] 2026-04-27 04:16:48,800 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-27 06:17:38] 2026-04-27 04:16:48,800 | INFO     | summary of transferred files:
[2026-04-27 06:17:38] 2026-04-27 04:16:48,800 | INFO     |  -- lfn=log.49912847._000196.job.log.tgz.1, status_code=0, status=transferred
[2026-04-27 06:17:38] 2026-04-27 04:16:48,801 | INFO     | stage-out finished correctly
[2026-04-27 06:17:38] 2026-04-27 04:16:50,050 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-27 06:17:38] 2026-04-27 04:16:51,037 | INFO     | job 7116175046 has state=finished
[2026-04-27 06:17:38] 2026-04-27 04:16:51,037 | INFO     | preparing for final server update for job 7116175046 in state='finished'
[2026-04-27 06:17:38] 2026-04-27 04:16:51,037 | INFO     | reading metadata from: /var/lib/boinc/var/slot72/slots/21/PanDA_Pilot-7116175046/jobReport.json
[2026-04-27 06:17:38] 2026-04-27 04:16:51,039 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot72/slots/21/workernode_map.json
[2026-04-27 06:17:38] 2026-04-27 04:16:51,039 | INFO     | this job has now completed (state=finished)
[2026-04-27 06:17:38] 2026-04-27 04:16:51,039 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-27 06:17:38] 2026-04-27 04:16:51,039 | INFO     | log transfer has been attempted: DONE
[2026-04-27 06:17:38] 2026-04-27 04:16:51,039 | INFO     | job 7116175046 has finished - writing final server update
[2026-04-27 06:17:38] 2026-04-27 04:16:51,039 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3836001/.job.ad'
[2026-04-27 06:17:38] 2026-04-27 04:16:51,039 | INFO     | total number of processed events: 400 (read)
[2026-04-27 06:17:38] 2026-04-27 04:16:51,056 | INFO     | using path: /var/lib/boinc/var/slot72/slots/21/PanDA_Pilot-7116175046/memory_monitor_summary.json (trf name=prmon)
[2026-04-27 06:17:38] 2026-04-27 04:16:51,057 | INFO     | extracted standard info from prmon json
[2026-04-27 06:17:38] 2026-04-27 04:16:51,057 | INFO     | extracted standard memory fields from prmon json
[2026-04-27 06:17:38] 2026-04-27 04:16:51,057 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-27 06:17:38] 2026-04-27 04:16:51,057 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-27 06:17:38] 2026-04-27 04:16:51,058 | INFO     | fitting pss+swap vs Time
[2026-04-27 06:17:38] 2026-04-27 04:16:51,058 | INFO     | sum of square deviations: 6094998.0
[2026-04-27 06:17:38] 2026-04-27 04:16:51,058 | INFO     | sum of deviations: 58711829.0
[2026-04-27 06:17:38] 2026-04-27 04:16:51,058 | INFO     | mean x (centered): 0.0
[2026-04-27 06:17:38] 2026-04-27 04:16:51,058 | INFO     | mean y: 2748390.6666666665
[2026-04-27 06:17:38] 2026-04-27 04:16:51,058 | INFO     | intersect: 2748390.6666666665
[2026-04-27 06:17:38] 2026-04-27 04:16:51,058 | INFO     | chi2: 0.0005704007279549403
[2026-04-27 06:17:38] 2026-04-27 04:16:51,058 | INFO     | current memory leak: 9.63 B/s (using 27 data points, chi2=0.00)
[2026-04-27 06:17:38] 2026-04-27 04:16:51,058 | INFO     | could have reported an average CPU frequency of 3648 MHz (5 samples)
[2026-04-27 06:17:38] 2026-04-27 04:16:51,058 | INFO     | ..............................
[2026-04-27 06:17:38] 2026-04-27 04:16:51,058 | INFO     | . Timing measurements:
[2026-04-27 06:17:38] 2026-04-27 04:16:51,058 | INFO     | . get job = 0 s
[2026-04-27 06:17:38] 2026-04-27 04:16:51,058 | INFO     | . initial setup = 4 s
[2026-04-27 06:17:38] 2026-04-27 04:16:51,058 | INFO     | . payload setup = 5 s
[2026-04-27 06:17:38] 2026-04-27 04:16:51,058 | INFO     | . stage-in = 0 s
[2026-04-27 06:17:38] 2026-04-27 04:16:51,058 | INFO     | . payload execution = 2038 s
[2026-04-27 06:17:38] 2026-04-27 04:16:51,058 | INFO     | . stage-out = 0 s
[2026-04-27 06:17:38] 2026-04-27 04:16:51,058 | INFO     | . log creation = 0 s
[2026-04-27 06:17:38] 2026-04-27 04:16:51,058 | INFO     | ..............................
[2026-04-27 06:17:38] 2026-04-27 04:16:51,105 | INFO     | 
[2026-04-27 06:17:38] 2026-04-27 04:16:51,105 | INFO     | job summary report
[2026-04-27 06:17:38] 2026-04-27 04:16:51,105 | INFO     | --------------------------------------------------
[2026-04-27 06:17:38] 2026-04-27 04:16:51,105 | INFO     | PanDA job id: 7116175046
[2026-04-27 06:17:38] 2026-04-27 04:16:51,106 | INFO     | task id: 49912847
[2026-04-27 06:17:38] 2026-04-27 04:16:51,106 | INFO     | errors: (none)
[2026-04-27 06:17:38] 2026-04-27 04:16:51,106 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-27 06:17:38] 2026-04-27 04:16:51,106 | INFO     | pilot state: finished 
[2026-04-27 06:17:38] 2026-04-27 04:16:51,106 | INFO     | transexitcode: 0
[2026-04-27 06:17:38] 2026-04-27 04:16:51,106 | INFO     | exeerrorcode: 0
[2026-04-27 06:17:38] 2026-04-27 04:16:51,106 | INFO     | exeerrordiag: 
[2026-04-27 06:17:38] 2026-04-27 04:16:51,106 | INFO     | exitcode: 0
[2026-04-27 06:17:38] 2026-04-27 04:16:51,106 | INFO     | exitmsg: OK
[2026-04-27 06:17:38] 2026-04-27 04:16:51,106 | INFO     | cpuconsumptiontime: 21947 s
[2026-04-27 06:17:38] 2026-04-27 04:16:51,106 | INFO     | nevents: 400
[2026-04-27 06:17:38] 2026-04-27 04:16:51,106 | INFO     | neventsw: 0
[2026-04-27 06:17:38] 2026-04-27 04:16:51,106 | INFO     | pid: 3878521
[2026-04-27 06:17:38] 2026-04-27 04:16:51,106 | INFO     | pgrp: 3878521
[2026-04-27 06:17:38] 2026-04-27 04:16:51,106 | INFO     | corecount: 12
[2026-04-27 06:17:38] 2026-04-27 04:16:51,106 | INFO     | event service: False
[2026-04-27 06:17:38] 2026-04-27 04:16:51,106 | INFO     | sizes: {0: 2276518, 11: 2276518, 2047: 2301585, 2049: 2310607, 2050: 2310663, 2051: 2310889}
[2026-04-27 06:17:38] 2026-04-27 04:16:51,106 | INFO     | --------------------------------------------------
[2026-04-27 06:17:38] 2026-04-27 04:16:51,106 | INFO     | 
[2026-04-27 06:17:38] 2026-04-27 04:16:51,106 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot72/slots/21
[2026-04-27 06:17:38] 2026-04-27 04:16:51,122 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-27 06:17:38] 2026-04-27 04:16:51,123 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-27 06:17:38] 2026-04-27 04:16:51,123 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-27 06:17:38] 2026-04-27 04:16:51,123 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-27 06:17:38] 2026-04-27 04:16:51,123 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-27 06:17:38] 2026-04-27 04:16:51,123 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-27 06:17:38] 2026-04-27 04:16:51,123 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-27 06:17:38] 2026-04-27 04:16:51,123 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-27 06:17:38] 2026-04-27 04:16:51,123 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-27 06:17:38] 2026-04-27 04:16:51,123 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-27 06:17:38] 2026-04-27 04:16:51,123 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-27 06:17:38] 2026-04-27 04:16:51,123 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-27 06:17:38] 2026-04-27 04:16:51,123 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-27 06:17:38] 2026-04-27 04:16:51,123 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-27 06:17:38] 2026-04-27 04:16:51,123 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-27 06:17:38] 2026-04-27 04:16:51,123 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-27 06:17:38] 2026-04-27 04:16:51,123 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-27 06:17:38] 2026-04-27 04:16:51,123 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-27 06:17:38] 2026-04-27 04:16:51,124 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-27 06:17:38] 2026-04-27 04:16:51,124 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-27 06:17:38] 2026-04-27 04:16:51,124 | INFO     | job 7116175046 has completed (purged errors)
[2026-04-27 06:17:38] 2026-04-27 04:16:51,124 | INFO     | overall cleanup function is called
[2026-04-27 06:17:38] 2026-04-27 04:16:52,132 | INFO     | --- collectZombieJob: --- 10, [3878521]
[2026-04-27 06:17:38] 2026-04-27 04:16:52,132 | INFO     | zombie collector waiting for pid 3878521
[2026-04-27 06:17:38] 2026-04-27 04:16:52,132 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-27 06:17:38] 2026-04-27 04:16:52,132 | INFO     | collected zombie processes
[2026-04-27 06:17:38] 2026-04-27 04:16:52,132 | INFO     | will attempt to kill all subprocesses of pid=3878521
[2026-04-27 06:17:38] 2026-04-27 04:16:52,331 | INFO     | process IDs to be killed: [3878521] (in reverse order)
[2026-04-27 06:17:38] 2026-04-27 04:16:52,469 | WARNING  | found no corresponding commands to process id(s)
[2026-04-27 06:17:38] 2026-04-27 04:16:52,469 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-27 06:17:38] 2026-04-27 04:16:52,492 | INFO     | did not find any defunct processes belonging to 3878521
[2026-04-27 06:17:38] 2026-04-27 04:16:52,512 | INFO     | did not find any defunct processes belonging to 3878521
[2026-04-27 06:17:38] 2026-04-27 04:16:52,512 | INFO     | Ready for new job
[2026-04-27 06:17:38] 2026-04-27 04:16:52,513 | INFO     | ***************************************
[2026-04-27 06:17:38] 2026-04-27 04:16:52,513 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-27 06:17:38] 2026-04-27 04:16:52,513 | INFO     | ***************************************
[2026-04-27 06:17:38] 2026-04-27 04:16:52,513 | INFO     | 
[2026-04-27 06:17:38] 2026-04-27 04:16:52,518 | INFO     | architecture information:
[2026-04-27 06:17:38] 2026-04-27 04:16:52,519 | INFO     | executing command: cat /etc/os-release
[2026-04-27 06:17:38] 2026-04-27 04:16:52,531 | INFO     | cat /etc/os-release:
[2026-04-27 06:17:38] NAME="CentOS Linux"
[2026-04-27 06:17:38] VERSION="7 (Core)"
[2026-04-27 06:17:38] ID="centos"
[2026-04-27 06:17:38] ID_LIKE="rhel fedora"
[2026-04-27 06:17:38] VERSION_ID="7"
[2026-04-27 06:17:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-27 06:17:38] ANSI_COLOR="0;31"
[2026-04-27 06:17:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-27 06:17:38] HOME_URL="https://www.centos.org/"
[2026-04-27 06:17:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-27 06:17:38] 
[2026-04-27 06:17:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-27 06:17:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-27 06:17:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-27 06:17:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-27 06:17:38] 
[2026-04-27 06:17:38] 2026-04-27 04:16:52,531 | INFO     | ***************************************
[2026-04-27 06:17:38] 2026-04-27 04:16:53,033 | INFO     | executing command: df -mP /var/lib/boinc/var/slot72/slots/21
[2026-04-27 06:17:38] 2026-04-27 04:16:53,050 | INFO     | sufficient remaining disk space (19760414720 B)
[2026-04-27 06:17:38] 2026-04-27 04:16:53,050 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-27 06:17:38] 2026-04-27 04:16:53,050 | INFO     | current server update state: UPDATING_FINAL
[2026-04-27 06:17:38] 2026-04-27 04:16:53,050 | INFO     | update_server=False
[2026-04-27 06:17:38] 2026-04-27 04:16:53,050 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-27 06:17:38] 2026-04-27 04:16:53,051 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-27 06:17:38] 2026-04-27 04:16:53,429 | WARNING  | process 3878521 can no longer be monitored (due to stat problems) - aborting
[2026-04-27 06:17:38] 2026-04-27 04:16:53,633 | INFO     | all payload control threads have been joined
[2026-04-27 06:17:38] 2026-04-27 04:16:53,690 | INFO     | using path: /var/lib/boinc/var/slot72/slots/21/memory_monitor_summary.json (trf name=prmon)
[2026-04-27 06:17:38] 2026-04-27 04:16:53,842 | INFO     | all data control threads have been joined
[2026-04-27 06:17:38] 2026-04-27 04:16:53,980 | INFO     | number of running child processes to parent process 3878521: 1
[2026-04-27 06:17:38] 2026-04-27 04:16:53,980 | INFO     | maximum number of monitored processes: 6
[2026-04-27 06:17:38] 2026-04-27 04:16:53,980 | INFO     | aborting job monitoring since job object (job id=7116175046) has expired
[2026-04-27 06:17:38] 2026-04-27 04:16:53,980 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-27 06:17:38] 2026-04-27 04:16:53,980 | INFO     | will abort loop
[2026-04-27 06:17:38] 2026-04-27 04:16:54,056 | INFO     | [job] retrieve thread has finished
[2026-04-27 06:17:38] 2026-04-27 04:16:54,056 | INFO     | [job] queue monitor thread has finished
[2026-04-27 06:17:38] 2026-04-27 04:16:54,106 | INFO     | [payload] failed_post thread has finished
[2026-04-27 06:17:38] 2026-04-27 04:16:54,136 | INFO     | all job control threads have been joined
[2026-04-27 06:17:38] 2026-04-27 04:16:54,142 | INFO     | [job] validate thread has finished
[2026-04-27 06:17:38] 2026-04-27 04:16:54,356 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-27 06:17:38] 2026-04-27 04:16:54,418 | INFO     | [payload] validate_pre thread has finished
[2026-04-27 06:17:38] 2026-04-27 04:16:54,440 | INFO     | [job] create_data_payload thread has finished
[2026-04-27 06:17:38] 2026-04-27 04:16:54,576 | INFO     | [payload] execute_payloads thread has finished
[2026-04-27 06:17:38] 2026-04-27 04:16:54,613 | INFO     | [data] copytool_in thread has finished
[2026-04-27 06:17:38] 2026-04-27 04:16:54,638 | INFO     | [payload] control thread has finished
[2026-04-27 06:17:38] 2026-04-27 04:16:54,847 | INFO     | [data] control thread has finished
[2026-04-27 06:17:38] 2026-04-27 04:16:54,985 | INFO     | [job] job monitor thread has finished
[2026-04-27 06:17:38] 2026-04-27 04:16:55,013 | INFO     | [payload] validate_post thread has finished
[2026-04-27 06:17:38] 2026-04-27 04:16:55,023 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-27 06:17:38] 2026-04-27 04:16:55,141 | INFO     | [job] control thread has finished
[2026-04-27 06:17:38] 2026-04-27 04:16:56,104 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-27 06:17:38] 2026-04-27 04:16:56,361 | INFO     | [data] copytool_out thread has finished
[2026-04-27 06:17:38] 2026-04-27 04:17:00,110 | INFO     | [data] queue_monitor thread has finished
[2026-04-27 06:17:38] 2026-04-27 04:17:24,456 | INFO     | PID=3865200 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-27 06:17:38] 2026-04-27 04:17:24,456 | INFO     | .. there are 16 such processes running
[2026-04-27 06:17:38] 2026-04-27 04:17:24,457 | INFO     | found 0 job(s) in 20 queues
[2026-04-27 06:17:38] 2026-04-27 04:17:24,457 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-27 06:17:38] 2026-04-27 04:17:24,457 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-27 06:17:38] 2026-04-27 04:17:31,993 | INFO     | [monitor] cgroup control has ended
[2026-04-27 06:17:38] 2026-04-27 04:17:32,802 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22456219322176)>', '<ExcThread(monitor, started 22455977772800)>']
[2026-04-27 06:17:38] 2026-04-27 04:17:33,502 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-27 06:17:38] 2026-04-27 04:17:33,502 | INFO     | [monitor] control thread has ended
[2026-04-27 06:17:38] 2026-04-27 04:17:37,827 | INFO     | all workflow threads have been joined
[2026-04-27 06:17:38] 2026-04-27 04:17:37,827 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-27 06:17:38] 2026-04-27 04:17:37,828 | INFO     | traces error code: 0
[2026-04-27 06:17:38] 2026-04-27 04:17:37,828 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-27 06:17:38] 2026-04-27 04:17:37,932 [wrapper] ==== pilot stdout END ====
[2026-04-27 06:17:38] 2026-04-27 04:17:37,933 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-27 06:17:38] 2026-04-27 04:17:37,935 [wrapper] pilotpid: 3865200
[2026-04-27 06:17:38] 2026-04-27 04:17:37,936 [wrapper] Pilot exit status: 0
[2026-04-27 06:17:38] 2026-04-27 04:17:37,942 [wrapper] pandaids: 7116175046
[2026-04-27 06:17:38] 2026-04-27 04:17:38,044 [wrapper] cleanup supervisor_pilot 4104018 3865201
[2026-04-27 06:17:38] 2026-04-27 04:17:38,046 [wrapper] Test setup, not cleaning
[2026-04-27 06:17:38] 2026-04-27 04:17:38,048 [wrapper] apfmon messages muted
[2026-04-27 06:17:38] 2026-04-27 04:17:38,049 [wrapper] ==== wrapper stdout END ====
[2026-04-27 06:17:38] 2026-04-27 04:17:38,050 [wrapper] ==== wrapper stderr END ====
[2026-04-27 06:17:38]  *** Error codes and diagnostics ***
[2026-04-27 06:17:38]     "exeErrorCode": 0,
[2026-04-27 06:17:38]     "pilotErrorCode": 0,
[2026-04-27 06:17:38]  *** Listing of results directory ***
[2026-04-27 06:17:38] total 1356996
[2026-04-27 06:17:38] -rwx------. 1 boinc boinc      36322 Apr 26 21:32 runpilot2-wrapper.sh
[2026-04-27 06:17:38] -rw-r--r--. 1 boinc boinc       5631 Apr 26 21:34 queuedata.json
[2026-04-27 06:17:38] -rw-r--r--. 1 boinc boinc     683926 Apr 26 21:34 pilot3.tar.gz
[2026-04-27 06:17:38] -rw-r--r--. 1 boinc boinc        100 Apr 27 05:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-27 06:17:38] -rwxr-xr-x. 1 boinc boinc       7986 Apr 27 05:42 run_atlas
[2026-04-27 06:17:38] -rw-r--r--. 1 boinc boinc        105 Apr 27 05:42 job.xml
[2026-04-27 06:17:38] -rw-r--r--. 2 boinc boinc 1167790013 Apr 27 05:42 EVNT.49912842._000002.pool.root.1
[2026-04-27 06:17:38] -rw-r--r--. 1 boinc boinc       6628 Apr 27 05:42 init_data.xml
[2026-04-27 06:17:38] -rw-r--r--. 2 boinc boinc      15667 Apr 27 05:42 start_atlas.sh
[2026-04-27 06:17:38] drwxrwx--x. 2 boinc boinc       4096 Apr 27 05:42 shared
[2026-04-27 06:17:38] -rw-r--r--. 2 boinc boinc     697427 Apr 27 05:42 input.tar.gz
[2026-04-27 06:17:38] -rw-r--r--. 1 boinc boinc          0 Apr 27 05:42 boinc_lockfile
[2026-04-27 06:17:38] -rw-r--r--. 1 boinc boinc       2614 Apr 27 05:42 pandaJob.out
[2026-04-27 06:17:38] -rw-------. 1 boinc boinc     997530 Apr 27 05:42 agis_schedconf.cvmfs.json
[2026-04-27 06:17:38] -rw-------. 1 boinc boinc    1509089 Apr 27 05:42 agis_ddmendpoints.agis.ALL.json
[2026-04-27 06:17:38] -rw-------. 1 boinc boinc        444 Apr 27 05:42 workernode_map.json
[2026-04-27 06:17:38] drwx------. 5 boinc boinc       4096 Apr 27 05:42 pilot3
[2026-04-27 06:17:38] -rw-------. 1 boinc boinc  216299621 Apr 27 06:16 HITS.49912847._000196.pool.root.1
[2026-04-27 06:17:38] -rw-r--r--. 1 boinc boinc        488 Apr 27 06:16 boinc_task_state.xml
[2026-04-27 06:17:38] -rw-------. 1 boinc boinc       1030 Apr 27 06:16 memory_monitor_summary.json
[2026-04-27 06:17:38] -rw-------. 1 boinc boinc     431881 Apr 27 06:16 log.49912847._000196.job.log.tgz.1
[2026-04-27 06:17:38] -rw-------. 1 boinc boinc       6371 Apr 27 06:16 heartbeat_new.json
[2026-04-27 06:17:38] -rw-------. 1 boinc boinc       6262 Apr 27 06:16 heartbeat.json
[2026-04-27 06:17:38] -rw-r--r--. 1 boinc boinc       8192 Apr 27 06:17 boinc_mmap_file
[2026-04-27 06:17:38] -rw-r--r--. 1 boinc boinc         27 Apr 27 06:17 wrapper_checkpoint.txt
[2026-04-27 06:17:38] -rw-------. 1 boinc boinc         95 Apr 27 06:17 pilot_heartbeat.json
[2026-04-27 06:17:38] -rw-------. 1 boinc boinc       5366 Apr 27 06:17 pilotlog.txt
[2026-04-27 06:17:38] -rw-------. 1 boinc boinc     241637 Apr 27 06:17 log.49912847._000196.job.log.1
[2026-04-27 06:17:38] -rw-------. 1 boinc boinc        357 Apr 27 06:17 output.list
[2026-04-27 06:17:38] -rw-r--r--. 1 boinc boinc        410 Apr 27 06:17 runtime_log
[2026-04-27 06:17:38] -rw-------. 1 boinc boinc     686080 Apr 27 06:17 result.tar.gz
[2026-04-27 06:17:38] -rw-r--r--. 1 boinc boinc       8846 Apr 27 06:17 runtime_log.err
[2026-04-27 06:17:38] -rw-------. 1 boinc boinc        662 Apr 27 06:17 684d325bb0eb.diag
[2026-04-27 06:17:38] -rw-r--r--. 1 boinc boinc      21053 Apr 27 06:17 stderr.txt
[2026-04-27 06:17:38] HITS file was successfully produced:
[2026-04-27 06:17:38] -rw-------. 1 boinc boinc 216299621 Apr 27 06:16 shared/HITS.pool.root.1
[2026-04-27 06:17:38]  *** Contents of shared directory: ***
[2026-04-27 06:17:38] total 1353032
[2026-04-27 06:17:38] -rw-r--r--. 2 boinc boinc 1167790013 Apr 27 05:42 ATLAS.root_0
[2026-04-27 06:17:38] -rw-r--r--. 2 boinc boinc      15667 Apr 27 05:42 start_atlas.sh
[2026-04-27 06:17:38] -rw-r--r--. 2 boinc boinc     697427 Apr 27 05:42 input.tar.gz
[2026-04-27 06:17:38] -rw-------. 1 boinc boinc  216299621 Apr 27 06:16 HITS.pool.root.1
[2026-04-27 06:17:38] -rw-------. 1 boinc boinc     686080 Apr 27 06:17 result.tar.gz
06:17:39 (3859182): run_atlas exited; CPU time 21999.623989
06:17:39 (3859182): called boinc_finish(0)

</stderr_txt>
]]>

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