Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:07:40 (25618): wrapper (7.7.26015): starting
10:07:40 (25618): wrapper: running run_atlas (--nthreads 8)
[2026-04-27 10:07:40] Arguments: --nthreads 8
[2026-04-27 10:07:40] Threads: 8
[2026-04-27 10:07:40] Checking for CVMFS
[2026-04-27 10:07:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-27 10:07:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-27 10:07:44] Running cvmfs_config stat atlas.cern.ch
[2026-04-27 10:07:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-27 10:07:46] 2.11.2.0 19479 16728 100768 158919 0 54 20283717 25165824 96 130560 0 5813221 99.939 5144347 12846 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-27 10:07:46] CVMFS is ok
[2026-04-27 10:07:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-27 10:07:46] Checking for apptainer binary...
[2026-04-27 10:07:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-27 10:07:46] Running /usr/bin/apptainer --version
[2026-04-27 10:07:46] apptainer version 1.3.2-1.el7
[2026-04-27 10:07:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-27 10:07:53] cg-vwn451.simple-grid.lan
[2026-04-27 10:07:53] apptainer works
[2026-04-27 10:07:53] Set ATHENA_PROC_NUMBER=8
[2026-04-27 10:07:53] Set ATHENA_CORE_NUMBER=8
[2026-04-27 10:07:53] Starting ATLAS job with PandaID=7116177490
[2026-04-27 10:07:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/26 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-27 17:28:19]  *** The last 200 lines of the pilot log: ***
[2026-04-27 17:28:19] 2026-04-27 15:27:35,620 | INFO     | this job has now completed (state=finished)
[2026-04-27 17:28:19] 2026-04-27 15:27:35,620 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-27 17:28:19] 2026-04-27 15:27:35,620 | INFO     | log transfer has been attempted: DONE
[2026-04-27 17:28:19] 2026-04-27 15:27:35,620 | INFO     | job 7116177490 has finished - writing final server update
[2026-04-27 17:28:19] 2026-04-27 15:27:35,621 | INFO     | total number of processed events: 400 (read)
[2026-04-27 17:28:19] 2026-04-27 15:27:35,623 | INFO     | using path: /var/lib/boinc/slots/26/PanDA_Pilot-7116177490/memory_monitor_summary.json (trf name=prmon)
[2026-04-27 17:28:19] 2026-04-27 15:27:35,623 | INFO     | extracted standard info from prmon json
[2026-04-27 17:28:19] 2026-04-27 15:27:35,624 | INFO     | extracted standard memory fields from prmon json
[2026-04-27 17:28:19] 2026-04-27 15:27:35,624 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-27 17:28:19] 2026-04-27 15:27:35,624 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-27 17:28:19] 2026-04-27 15:27:35,638 | INFO     | fitting pss+swap vs Time
[2026-04-27 17:28:19] 2026-04-27 15:27:35,639 | INFO     | sum of square deviations: 23137810570.0
[2026-04-27 17:28:19] 2026-04-27 15:27:35,645 | INFO     | sum of deviations: 182712595998.99982
[2026-04-27 17:28:19] 2026-04-27 15:27:35,645 | INFO     | mean x (centered): 0.0
[2026-04-27 17:28:19] 2026-04-27 15:27:35,645 | INFO     | mean y: 2514712.9833729216
[2026-04-27 17:28:19] 2026-04-27 15:27:35,645 | INFO     | intersect: 2514712.9833729216
[2026-04-27 17:28:19] 2026-04-27 15:27:35,646 | INFO     | chi2: 9.18307905251378
[2026-04-27 17:28:19] 2026-04-27 15:27:35,647 | INFO     | sum of square deviations: 22323172040.0
[2026-04-27 17:28:19] 2026-04-27 15:27:35,657 | INFO     | sum of deviations: 209956361617.50003
[2026-04-27 17:28:19] 2026-04-27 15:27:35,658 | INFO     | mean x (centered): 0.0
[2026-04-27 17:28:19] 2026-04-27 15:27:35,658 | INFO     | mean y: 2519759.5697115385
[2026-04-27 17:28:19] 2026-04-27 15:27:35,658 | INFO     | intersect: 2519759.5697115385
[2026-04-27 17:28:19] 2026-04-27 15:27:35,659 | INFO     | chi2: 8.402137111944482
[2026-04-27 17:28:19] 2026-04-27 15:27:35,659 | INFO     | current chi2=8.402137111944482 (change=8.504140453364844 %)
[2026-04-27 17:28:19] 2026-04-27 15:27:35,659 | INFO     | right removable region: 415
[2026-04-27 17:28:19] 2026-04-27 15:27:35,660 | INFO     | sum of square deviations: 22323172040.0
[2026-04-27 17:28:19] 2026-04-27 15:27:35,671 | INFO     | sum of deviations: 26242455834.000004
[2026-04-27 17:28:19] 2026-04-27 15:27:35,672 | INFO     | mean x (centered): 0.0
[2026-04-27 17:28:19] 2026-04-27 15:27:35,672 | INFO     | mean y: 2543997.5048076925
[2026-04-27 17:28:19] 2026-04-27 15:27:35,672 | INFO     | intersect: 2543997.5048076925
[2026-04-27 17:28:19] 2026-04-27 15:27:35,673 | INFO     | chi2: 4.018188884921681
[2026-04-27 17:28:19] 2026-04-27 15:27:35,673 | INFO     | current chi2=4.018188884921681 (change=56.24355554445826 %)
[2026-04-27 17:28:19] 2026-04-27 15:27:35,673 | INFO     | sum of square deviations: 21527882710.0
[2026-04-27 17:28:19] 2026-04-27 15:27:35,679 | INFO     | sum of deviations: -90408888607.99997
[2026-04-27 17:28:19] 2026-04-27 15:27:35,679 | INFO     | mean x (centered): 0.0
[2026-04-27 17:28:19] 2026-04-27 15:27:35,679 | INFO     | mean y: 2566346.0851581506
[2026-04-27 17:28:19] 2026-04-27 15:27:35,679 | INFO     | intersect: 2566346.0851581506
[2026-04-27 17:28:19] 2026-04-27 15:27:35,680 | INFO     | chi2: 1.2476051263094645
[2026-04-27 17:28:19] 2026-04-27 15:27:35,680 | INFO     | current chi2=1.2476051263094645 (change=68.95105824937392 %)
[2026-04-27 17:28:19] 2026-04-27 15:27:35,681 | INFO     | sum of square deviations: 20751710017.5
[2026-04-27 17:28:19] 2026-04-27 15:27:35,686 | INFO     | sum of deviations: -111475850011.0
[2026-04-27 17:28:19] 2026-04-27 15:27:35,686 | INFO     | mean x (centered): 0.0
[2026-04-27 17:28:19] 2026-04-27 15:27:35,686 | INFO     | mean y: 2570470.709359606
[2026-04-27 17:28:19] 2026-04-27 15:27:35,687 | INFO     | intersect: 2570470.709359606
[2026-04-27 17:28:19] 2026-04-27 15:27:35,687 | INFO     | chi2: 1.1136392623150537
[2026-04-27 17:28:19] 2026-04-27 15:27:35,687 | INFO     | current chi2=1.1136392623150537 (change=10.737841739292515 %)
[2026-04-27 17:28:19] 2026-04-27 15:27:35,688 | INFO     | left removable region: 15
[2026-04-27 17:28:19] 2026-04-27 15:27:35,688 | INFO     | sum of square deviations: 19845209300.0
[2026-04-27 17:28:19] 2026-04-27 15:27:35,707 | INFO     | sum of deviations: -81589652079.99997
[2026-04-27 17:28:19] 2026-04-27 15:27:35,707 | INFO     | mean x (centered): 0.0
[2026-04-27 17:28:19] 2026-04-27 15:27:35,707 | INFO     | mean y: 2576432.1
[2026-04-27 17:28:19] 2026-04-27 15:27:35,707 | INFO     | intersect: 2576432.1
[2026-04-27 17:28:19] 2026-04-27 15:27:35,708 | INFO     | chi2: 0.26503403312492907
[2026-04-27 17:28:19] 2026-04-27 15:27:35,708 | INFO     | current memory leak: -4.11 B/s (using 400 data points, chi2=0.27)
[2026-04-27 17:28:19] 2026-04-27 15:27:35,709 | INFO     | could have reported an average CPU frequency of 1999 MHz (18 samples)
[2026-04-27 17:28:19] 2026-04-27 15:27:35,709 | INFO     | ..............................
[2026-04-27 17:28:19] 2026-04-27 15:27:35,709 | INFO     | . Timing measurements:
[2026-04-27 17:28:19] 2026-04-27 15:27:35,709 | INFO     | . get job = 0 s
[2026-04-27 17:28:19] 2026-04-27 15:27:35,709 | INFO     | . initial setup = 119 s
[2026-04-27 17:28:19] 2026-04-27 15:27:35,709 | INFO     | . payload setup = 188 s
[2026-04-27 17:28:19] 2026-04-27 15:27:35,710 | INFO     | . stage-in = 0 s
[2026-04-27 17:28:19] 2026-04-27 15:27:35,710 | INFO     | . payload execution = 25779 s
[2026-04-27 17:28:19] 2026-04-27 15:27:35,710 | INFO     | . stage-out = 3 s
[2026-04-27 17:28:19] 2026-04-27 15:27:35,710 | INFO     | . log creation = 0 s
[2026-04-27 17:28:19] 2026-04-27 15:27:35,710 | INFO     | ..............................
[2026-04-27 17:28:19] 2026-04-27 15:27:35,831 | INFO     | 
[2026-04-27 17:28:19] 2026-04-27 15:27:35,831 | INFO     | job summary report
[2026-04-27 17:28:19] 2026-04-27 15:27:35,831 | INFO     | --------------------------------------------------
[2026-04-27 17:28:19] 2026-04-27 15:27:35,831 | INFO     | PanDA job id: 7116177490
[2026-04-27 17:28:19] 2026-04-27 15:27:35,831 | INFO     | task id: 49820244
[2026-04-27 17:28:19] 2026-04-27 15:27:35,832 | INFO     | errors: (none)
[2026-04-27 17:28:19] 2026-04-27 15:27:35,832 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-27 17:28:19] 2026-04-27 15:27:35,832 | INFO     | pilot state: finished 
[2026-04-27 17:28:19] 2026-04-27 15:27:35,832 | INFO     | transexitcode: 0
[2026-04-27 17:28:19] 2026-04-27 15:27:35,832 | INFO     | exeerrorcode: 0
[2026-04-27 17:28:19] 2026-04-27 15:27:35,832 | INFO     | exeerrordiag: 
[2026-04-27 17:28:19] 2026-04-27 15:27:35,832 | INFO     | exitcode: 0
[2026-04-27 17:28:19] 2026-04-27 15:27:35,832 | INFO     | exitmsg: OK
[2026-04-27 17:28:19] 2026-04-27 15:27:35,832 | INFO     | cpuconsumptiontime: 99271 s
[2026-04-27 17:28:19] 2026-04-27 15:27:35,833 | INFO     | nevents: 400
[2026-04-27 17:28:19] 2026-04-27 15:27:35,833 | INFO     | neventsw: 0
[2026-04-27 17:28:19] 2026-04-27 15:27:35,833 | INFO     | pid: 1674
[2026-04-27 17:28:19] 2026-04-27 15:27:35,833 | INFO     | pgrp: 1674
[2026-04-27 17:28:19] 2026-04-27 15:27:35,833 | INFO     | corecount: 8
[2026-04-27 17:28:19] 2026-04-27 15:27:35,833 | INFO     | event service: False
[2026-04-27 17:28:19] 2026-04-27 15:27:35,833 | INFO     | sizes: {0: 2274623, 1: 2275024, 2: 2276480, 12: 2276480, 25972: 2312633, 25973: 2312632, 25976: 2321520, 25980: 2321770}
[2026-04-27 17:28:19] 2026-04-27 15:27:35,833 | INFO     | --------------------------------------------------
[2026-04-27 17:28:19] 2026-04-27 15:27:35,833 | INFO     | 
[2026-04-27 17:28:19] 2026-04-27 15:27:35,834 | INFO     | executing command: ls -lF /var/lib/boinc/slots/26
[2026-04-27 17:28:19] 2026-04-27 15:27:36,359 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-27 17:28:19] 2026-04-27 15:27:36,360 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-27 17:28:19] 2026-04-27 15:27:36,360 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-27 17:28:19] 2026-04-27 15:27:36,360 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-27 17:28:19] 2026-04-27 15:27:36,360 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-27 17:28:19] 2026-04-27 15:27:36,360 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-27 17:28:19] 2026-04-27 15:27:36,360 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-27 17:28:19] 2026-04-27 15:27:36,360 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-27 17:28:19] 2026-04-27 15:27:36,361 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-27 17:28:19] 2026-04-27 15:27:36,361 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-27 17:28:19] 2026-04-27 15:27:36,361 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-27 17:28:19] 2026-04-27 15:27:36,361 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-27 17:28:19] 2026-04-27 15:27:36,361 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-27 17:28:19] 2026-04-27 15:27:36,361 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-27 17:28:19] 2026-04-27 15:27:36,361 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-27 17:28:19] 2026-04-27 15:27:36,361 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-27 17:28:19] 2026-04-27 15:27:36,362 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-27 17:28:19] 2026-04-27 15:27:36,362 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-27 17:28:19] 2026-04-27 15:27:36,365 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-27 17:28:19] 2026-04-27 15:27:36,365 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-27 17:28:19] 2026-04-27 15:27:36,365 | INFO     | job 7116177490 has completed (purged errors)
[2026-04-27 17:28:19] 2026-04-27 15:27:36,365 | INFO     | overall cleanup function is called
[2026-04-27 17:28:19] 2026-04-27 15:27:37,374 | INFO     | --- collectZombieJob: --- 10, [1674]
[2026-04-27 17:28:19] 2026-04-27 15:27:37,374 | INFO     | zombie collector waiting for pid 1674
[2026-04-27 17:28:19] 2026-04-27 15:27:37,374 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-27 17:28:19] 2026-04-27 15:27:37,374 | INFO     | collected zombie processes
[2026-04-27 17:28:19] 2026-04-27 15:27:37,374 | INFO     | will attempt to kill all subprocesses of pid=1674
[2026-04-27 17:28:19] 2026-04-27 15:27:37,437 | INFO     | process IDs to be killed: [1674] (in reverse order)
[2026-04-27 17:28:19] 2026-04-27 15:27:38,179 | WARNING  | found no corresponding commands to process id(s)
[2026-04-27 17:28:19] 2026-04-27 15:27:38,179 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-27 17:28:19] 2026-04-27 15:27:38,181 | INFO     | did not find any defunct processes belonging to 1674
[2026-04-27 17:28:19] 2026-04-27 15:27:38,183 | INFO     | did not find any defunct processes belonging to 1674
[2026-04-27 17:28:19] 2026-04-27 15:27:38,191 | INFO     | Ready for new job
[2026-04-27 17:28:19] 2026-04-27 15:27:38,193 | INFO     | ***************************************
[2026-04-27 17:28:19] 2026-04-27 15:27:38,193 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-27 17:28:19] 2026-04-27 15:27:38,194 | INFO     | ***************************************
[2026-04-27 17:28:19] 2026-04-27 15:27:38,194 | INFO     | 
[2026-04-27 17:28:19] 2026-04-27 15:27:38,194 | INFO     | pilot is running in a VM
[2026-04-27 17:28:19] 2026-04-27 15:27:38,194 | INFO     | architecture information:
[2026-04-27 17:28:19] 2026-04-27 15:27:38,205 | INFO     | executing command: cat /etc/os-release
[2026-04-27 17:28:19] 2026-04-27 15:27:38,538 | INFO     | cat /etc/os-release:
[2026-04-27 17:28:19] NAME="CentOS Linux"
[2026-04-27 17:28:19] VERSION="7 (Core)"
[2026-04-27 17:28:19] ID="centos"
[2026-04-27 17:28:19] ID_LIKE="rhel fedora"
[2026-04-27 17:28:19] VERSION_ID="7"
[2026-04-27 17:28:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-27 17:28:19] ANSI_COLOR="0;31"
[2026-04-27 17:28:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-27 17:28:19] HOME_URL="https://www.centos.org/"
[2026-04-27 17:28:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-27 17:28:19] 
[2026-04-27 17:28:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-27 17:28:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-27 17:28:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-27 17:28:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-27 17:28:19] 
[2026-04-27 17:28:19] 2026-04-27 15:27:38,539 | INFO     | ***************************************
[2026-04-27 17:28:19] 2026-04-27 15:27:39,042 | INFO     | executing command: df -mP /var/lib/boinc/slots/26
[2026-04-27 17:28:19] 2026-04-27 15:27:39,323 | INFO     | sufficient remaining disk space (491706646528 B)
[2026-04-27 17:28:19] 2026-04-27 15:27:39,324 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-27 17:28:19] 2026-04-27 15:27:39,324 | INFO     | current server update state: UPDATING_FINAL
[2026-04-27 17:28:19] 2026-04-27 15:27:39,324 | INFO     | update_server=False
[2026-04-27 17:28:19] 2026-04-27 15:27:39,324 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-27 17:28:19] 2026-04-27 15:27:39,325 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-27 17:28:19] 2026-04-27 15:27:39,325 | INFO     | aborting loop
[2026-04-27 17:28:19] 2026-04-27 15:27:39,955 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-27 17:28:19] 2026-04-27 15:27:39,968 | INFO     | all data control threads have been joined
[2026-04-27 17:28:19] 2026-04-27 15:27:40,099 | INFO     | all job control threads have been joined
[2026-04-27 17:28:19] 2026-04-27 15:27:40,330 | INFO     | [job] retrieve thread has finished
[2026-04-27 17:28:19] 2026-04-27 15:27:40,331 | INFO     | [job] job monitor thread has finished
[2026-04-27 17:28:19] 2026-04-27 15:27:40,355 | INFO     | [payload] failed_post thread has finished
[2026-04-27 17:28:19] 2026-04-27 15:27:40,488 | INFO     | all payload control threads have been joined
[2026-04-27 17:28:19] 2026-04-27 15:27:40,538 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-27 17:28:19] 2026-04-27 15:27:40,822 | INFO     | [payload] validate_post thread has finished
[2026-04-27 17:28:19] 2026-04-27 15:27:40,846 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-27 17:28:19] 2026-04-27 15:27:40,974 | INFO     | [data] control thread has finished
[2026-04-27 17:28:19] 2026-04-27 15:27:41,105 | INFO     | [job] control thread has finished
[2026-04-27 17:28:19] 2026-04-27 15:27:41,389 | INFO     | [payload] validate_pre thread has finished
[2026-04-27 17:28:19] 2026-04-27 15:27:41,407 | INFO     | [payload] execute_payloads thread has finished
[2026-04-27 17:28:19] 2026-04-27 15:27:41,483 | INFO     | [data] copytool_in thread has finished
[2026-04-27 17:28:19] 2026-04-27 15:27:41,494 | INFO     | [payload] control thread has finished
[2026-04-27 17:28:19] 2026-04-27 15:27:41,534 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-27 17:28:19] 2026-04-27 15:27:41,638 | INFO     | [job] create_data_payload thread has finished
[2026-04-27 17:28:19] 2026-04-27 15:27:41,732 | INFO     | [job] validate thread has finished
[2026-04-27 17:28:19] 2026-04-27 15:27:41,852 | INFO     | [job] queue monitor thread has finished
[2026-04-27 17:28:19] 2026-04-27 15:27:41,962 | INFO     | [data] copytool_out thread has finished
[2026-04-27 17:28:19] 2026-04-27 15:27:45,543 | INFO     | [data] queue_monitor thread has finished
[2026-04-27 17:28:19] 2026-04-27 15:28:06,981 | INFO     | [monitor] cgroup control has ended
[2026-04-27 17:28:19] 2026-04-27 15:28:07,723 | INFO     | PID=29590 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-27 17:28:19] 2026-04-27 15:28:07,724 | INFO     | .. there are 2 such processes running
[2026-04-27 17:28:19] 2026-04-27 15:28:07,731 | INFO     | found 0 job(s) in 20 queues
[2026-04-27 17:28:19] 2026-04-27 15:28:07,731 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-27 17:28:19] 2026-04-27 15:28:07,731 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-27 17:28:19] 2026-04-27 15:28:08,711 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139714961798976)>', '<ExcThread(monitor, started 139714514368256)>']
[2026-04-27 17:28:19] 2026-04-27 15:28:08,737 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-27 17:28:19] 2026-04-27 15:28:08,737 | INFO     | [monitor] control thread has ended
[2026-04-27 17:28:19] 2026-04-27 15:28:13,737 | INFO     | all workflow threads have been joined
[2026-04-27 17:28:19] 2026-04-27 15:28:13,737 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-27 17:28:19] 2026-04-27 15:28:13,737 | INFO     | traces error code: 0
[2026-04-27 17:28:19] 2026-04-27 15:28:13,738 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-27 17:28:19] 2026-04-27 15:28:14,159 [wrapper] ==== pilot stdout END ====
[2026-04-27 17:28:19] 2026-04-27 15:28:14,271 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-27 17:28:19] 2026-04-27 15:28:14,362 [wrapper] pilotpid: 29590
[2026-04-27 17:28:19] 2026-04-27 15:28:14,458 [wrapper] Pilot exit status: 0
[2026-04-27 17:28:19] 2026-04-27 15:28:14,913 [wrapper] pandaids: 7116177490
[2026-04-27 17:28:19] 2026-04-27 15:28:16,043 [wrapper] cleanup supervisor_pilot 10604 29591
[2026-04-27 17:28:19] 2026-04-27 15:28:16,106 [wrapper] Test setup, not cleaning
[2026-04-27 17:28:19] 2026-04-27 15:28:16,189 [wrapper] apfmon messages muted
[2026-04-27 17:28:19] 2026-04-27 15:28:16,306 [wrapper] ==== wrapper stdout END ====
[2026-04-27 17:28:19] 2026-04-27 15:28:16,406 [wrapper] ==== wrapper stderr END ====
[2026-04-27 17:28:19]  *** Error codes and diagnostics ***
[2026-04-27 17:28:19]     "exeErrorCode": 0,
[2026-04-27 17:28:19]     "pilotErrorCode": 0,
[2026-04-27 17:28:19]  *** Listing of results directory ***
[2026-04-27 17:28:19] total 2445524
[2026-04-27 17:28:19] -rwx------. 1 boinc boinc      36322 Apr 26 21:32 runpilot2-wrapper.sh
[2026-04-27 17:28:19] -rw-r--r--. 1 boinc boinc       5631 Apr 26 21:34 queuedata.json
[2026-04-27 17:28:19] -rw-r--r--. 1 boinc boinc     683926 Apr 26 21:34 pilot3.tar.gz
[2026-04-27 17:28:19] -rw-r--r--. 1 boinc boinc        100 Apr 27 10:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-27 17:28:19] -rwxr-xr-x. 1 boinc boinc       7986 Apr 27 10:07 run_atlas
[2026-04-27 17:28:19] -rw-r--r--. 1 boinc boinc        105 Apr 27 10:07 job.xml
[2026-04-27 17:28:19] -rw-r--r--. 1 boinc boinc       6307 Apr 27 10:07 init_data.xml
[2026-04-27 17:28:19] -rw-r--r--. 2 boinc boinc 2225837475 Apr 27 10:07 EVNT.49820242._000012.pool.root.1
[2026-04-27 17:28:19] -rw-r--r--. 2 boinc boinc      15667 Apr 27 10:07 start_atlas.sh
[2026-04-27 17:28:19] drwxrwx--x. 2 boinc boinc         68 Apr 27 10:07 shared
[2026-04-27 17:28:19] -rw-r--r--. 2 boinc boinc     697411 Apr 27 10:07 input.tar.gz
[2026-04-27 17:28:19] -rw-r--r--. 1 boinc boinc          0 Apr 27 10:07 boinc_lockfile
[2026-04-27 17:28:19] -rw-r--r--. 1 boinc boinc       2547 Apr 27 10:07 pandaJob.out
[2026-04-27 17:28:19] -rw-------. 1 boinc boinc        415 Apr 27 10:14 workernode_map.json
[2026-04-27 17:28:19] -rw-------. 1 boinc boinc     996863 Apr 27 10:14 agis_schedconf.cvmfs.json
[2026-04-27 17:28:19] drwx------. 5 boinc boinc       4096 Apr 27 10:14 pilot3
[2026-04-27 17:28:19] -rw-------. 1 boinc boinc  268501487 Apr 27 17:25 HITS.49820244._016845.pool.root.1
[2026-04-27 17:28:19] -rw-r--r--. 1 boinc boinc        489 Apr 27 17:26 boinc_task_state.xml
[2026-04-27 17:28:19] -rw-------. 1 boinc boinc       1015 Apr 27 17:27 memory_monitor_summary.json
[2026-04-27 17:28:19] -rw-------. 1 boinc boinc    1508585 Apr 27 17:27 agis_ddmendpoints.agis.ALL.json
[2026-04-27 17:28:19] -rw-------. 1 boinc boinc     499528 Apr 27 17:27 log.49820244._016845.job.log.tgz.1
[2026-04-27 17:28:19] -rw-------. 1 boinc boinc       6351 Apr 27 17:27 heartbeat_new.json
[2026-04-27 17:28:19] -rw-------. 1 boinc boinc       6242 Apr 27 17:27 heartbeat.json
[2026-04-27 17:28:19] -rw-r--r--. 1 boinc boinc       8192 Apr 27 17:27 boinc_mmap_file
[2026-04-27 17:28:19] -rw-r--r--. 1 boinc boinc         28 Apr 27 17:27 wrapper_checkpoint.txt
[2026-04-27 17:28:19] -rw-------. 1 boinc boinc         95 Apr 27 17:28 pilot_heartbeat.json
[2026-04-27 17:28:19] -rw-------. 1 boinc boinc       4884 Apr 27 17:28 pilotlog.txt
[2026-04-27 17:28:19] -rw-------. 1 boinc boinc    2376908 Apr 27 17:28 log.49820244._016845.job.log.1
[2026-04-27 17:28:19] -rw-------. 1 boinc boinc        357 Apr 27 17:28 output.list
[2026-04-27 17:28:19] -rw-r--r--. 1 boinc boinc        410 Apr 27 17:28 runtime_log
[2026-04-27 17:28:19] -rw-------. 1 boinc boinc    2897920 Apr 27 17:28 result.tar.gz
[2026-04-27 17:28:19] -rw-r--r--. 1 boinc boinc       8455 Apr 27 17:28 runtime_log.err
[2026-04-27 17:28:19] -rw-------. 1 boinc boinc        656 Apr 27 17:28 684262a9770c.diag
[2026-04-27 17:28:19] -rw-r--r--. 1 boinc boinc      20633 Apr 27 17:28 stderr.txt
[2026-04-27 17:28:19] HITS file was successfully produced:
[2026-04-27 17:28:19] -rw-------. 1 boinc boinc 268501487 Apr 27 17:25 shared/HITS.pool.root.1
[2026-04-27 17:28:19]  *** Contents of shared directory: ***
[2026-04-27 17:28:19] total 2439416
[2026-04-27 17:28:19] -rw-r--r--. 2 boinc boinc 2225837475 Apr 27 10:07 ATLAS.root_0
[2026-04-27 17:28:19] -rw-r--r--. 2 boinc boinc      15667 Apr 27 10:07 start_atlas.sh
[2026-04-27 17:28:19] -rw-r--r--. 2 boinc boinc     697411 Apr 27 10:07 input.tar.gz
[2026-04-27 17:28:19] -rw-------. 1 boinc boinc  268501487 Apr 27 17:25 HITS.pool.root.1
[2026-04-27 17:28:19] -rw-------. 1 boinc boinc    2897920 Apr 27 17:28 result.tar.gz
17:28:20 (25618): run_atlas exited; CPU time 99543.174307
17:28:20 (25618): called boinc_finish(0)

</stderr_txt>
]]>

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