Stderr output

<core_client_version>8.2.9</core_client_version>
<![CDATA[
<stderr_txt>
2026-04-27 02:42:16 (15612): vboxwrapper version 26210
2026-04-27 02:42:16 (15612): BOINC client version: 8.2.9
2026-04-27 02:42:17 (15612): Detected: VirtualBox VboxManage Interface (Version: 7.0.18)
2026-04-27 02:42:18 (15612): Successfully copied 'init_data.xml' to the shared directory.
2026-04-27 02:42:18 (15612): Create VM. (boinc_66952e6488b871e2, slot#1)
2026-04-27 02:42:19 (15612): Setting Memory Size for VM. (4400MB)
2026-04-27 02:42:19 (15612): Setting CPU Count for VM. (4)
2026-04-27 02:42:19 (15612): Setting Chipset Options for VM.
2026-04-27 02:42:19 (15612): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-04-27 02:42:20 (15612): Setting Boot Options for VM.
2026-04-27 02:42:20 (15612): Setting Network Configuration for NAT. (Driver: virtio)
2026-04-27 02:42:21 (15612): Enabling VM Network Access.
2026-04-27 02:42:21 (15612): Disabling USB Support for VM.
2026-04-27 02:42:21 (15612): Disabling COM Port Support for VM.
2026-04-27 02:42:21 (15612): Disabling LPT Port Support for VM.
2026-04-27 02:42:22 (15612): Disabling Audio Support for VM.
2026-04-27 02:42:22 (15612): Disabling Clipboard Support for VM.
2026-04-27 02:42:22 (15612): Disabling Drag and Drop Support for VM.
2026-04-27 02:42:23 (15612): Adding storage controller(s) to VM.
2026-04-27 02:42:23 (15612): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-04-27 02:42:25 (15612): Adding VirtualBox Guest Additions to VM.
2026-04-27 02:42:25 (15612): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-04-27 02:42:26 (15612): forwarding host port 50562 to guest port 80
2026-04-27 02:42:26 (15612): Enabling remote desktop for VM.
2026-04-27 02:42:26 (15612): Required extension pack not installed, remote desktop not enabled.
2026-04-27 02:42:26 (15612): Enabling shared directory for VM.
2026-04-27 02:42:27 (15612): Starting VM using VBoxManage interface. (boinc_66952e6488b871e2, slot#1)
2026-04-27 02:42:38 (15612): Successfully started VM. (PID = '14660')
2026-04-27 02:42:38 (15612): Reporting VM Process ID to BOINC.
2026-04-27 02:42:38 (15612): Guest Log: BIOS: VirtualBox 7.0.18
2026-04-27 02:42:38 (15612): Guest Log: CPUID EDX: 0x178bfbff
2026-04-27 02:42:38 (15612): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-04-27 02:42:38 (15612): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-04-27 02:42:38 (15612): VM state change detected. (old = 'poweredoff', new = 'running')
2026-04-27 02:42:38 (15612): Detected: Web Application Enabled (http://localhost:50562)
2026-04-27 02:42:38 (15612): Preference change detected
2026-04-27 02:42:38 (15612): Setting CPU throttle for VM. (100%)
2026-04-27 02:42:39 (15612): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2026-04-27 02:42:41 (15612): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-04-27 02:42:41 (15612): Guest Log: BIOS: Booting from Hard Disk...
2026-04-27 02:42:45 (15612): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-04-27 02:42:45 (15612): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-04-27 02:42:45 (15612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-04-27 02:42:45 (15612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-04-27 02:42:45 (15612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-04-27 02:42:45 (15612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-04-27 02:42:45 (15612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-04-27 02:42:45 (15612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-04-27 02:42:45 (15612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-04-27 02:42:45 (15612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-04-27 02:42:45 (15612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-04-27 02:42:45 (15612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-04-27 02:42:45 (15612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-04-27 02:42:45 (15612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-04-27 02:42:45 (15612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-04-27 02:42:45 (15612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-04-27 02:42:45 (15612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-04-27 02:42:45 (15612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-04-27 02:42:45 (15612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-04-27 02:42:45 (15612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-04-27 02:42:45 (15612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-04-27 02:42:45 (15612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-04-27 02:42:45 (15612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-04-27 02:42:45 (15612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-04-27 02:42:45 (15612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-04-27 02:42:45 (15612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-04-27 02:42:45 (15612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-04-27 02:42:45 (15612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-04-27 02:42:45 (15612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-04-27 02:42:45 (15612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-04-27 02:42:45 (15612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-04-27 02:42:45 (15612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-04-27 02:42:54 (15612): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-04-27 02:42:54 (15612): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-04-27 02:43:12 (15612): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-04-27 02:43:12 (15612): Guest Log: 00:00:00.000362 main     Log opened 2026-04-27T02:43:10.539289000Z
2026-04-27 02:43:12 (15612): Guest Log: 00:00:00.000697 main     OS Product: Linux
2026-04-27 02:43:12 (15612): Guest Log: 00:00:00.000806 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-04-27 02:43:12 (15612): Guest Log: 00:00:00.000895 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-04-27 02:43:12 (15612): Guest Log: 00:00:00.000983 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-04-27 02:43:12 (15612): Guest Log: 00:00:00.000985 main     Process ID: 1325
2026-04-27 02:43:12 (15612): Guest Log: 00:00:00.000987 main     Package type: LINUX_64BITS_GENERIC
2026-04-27 02:43:12 (15612): Guest Log: 00:00:00.003325 main     5.2.32 r132073 started. Verbose level = 0
2026-04-27 02:43:12 (15612): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-04-27 02:43:12 (15612): Guest Log: [INFO] Mounting shared directory
2026-04-27 02:43:13 (15612): Guest Log: [INFO] Checking for init_data.xml
2026-04-27 02:43:22 (15612): Guest Log: 00:00:10.010064 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 717 761 000ns (GuestNow=1 777 272 202 263 811 000 ns GuestLast=1 777 257 790 546 050 000 ns fSetTimeLastLoop=true )
2026-04-27 02:44:13 (15612): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-04-27 02:44:13 (15612): Guest Log: [INFO] Detected branch: prod
2026-04-27 02:44:13 (15612): Guest Log: This is the prod version of the ATLAS job wrapper
2026-04-27 02:44:13 (15612): Guest Log: Copying input files
2026-04-27 02:44:58 (15612): Guest Log: Copied input files into RunAtlas.
2026-04-27 02:44:58 (15612): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-04-27 02:44:58 (15612): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-04-27 02:44:58 (15612): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-04-27 02:44:58 (15612): Guest Log: Further information can be found at the LHC@home message board.
2026-04-27 02:45:08 (15612): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-04-27 02:45:09 (15612): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-04-27 02:45:09 (15612): Guest Log: 2.6.3.0 1626 0 32180 158918 4 1 3117648 4096001 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2026-04-27 02:45:11 (15612): Guest Log: copied the webapp to /var/www
2026-04-27 02:45:11 (15612): Guest Log: ATHENA_PROC_NUMBER=4
2026-04-27 02:45:11 (15612): Guest Log: ATHENA_CORE_NUMBER=4
2026-04-27 02:45:11 (15612): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-04-27 02:45:11 (15612): Guest Log:  *** Starting ATLAS job. (PandaID=7116177201 taskID=49820244) ***
2026-04-27 04:29:28 (15612): Status Report: Elapsed Time: '6000.760031'
2026-04-27 04:29:28 (15612): Status Report: CPU Time: '20686.125000'
2026-04-27 06:16:43 (15612): Status Report: Elapsed Time: '12001.643724'
2026-04-27 06:16:43 (15612): Status Report: CPU Time: '45029.218750'
2026-04-27 08:04:23 (15612): Status Report: Elapsed Time: '18002.569710'
2026-04-27 08:04:23 (15612): Status Report: CPU Time: '69432.671875'
2026-04-27 09:50:49 (15612): Status Report: Elapsed Time: '24003.568407'
2026-04-27 09:50:49 (15612): Status Report: CPU Time: '93375.000000'
2026-04-27 11:37:57 (15612): Status Report: Elapsed Time: '30003.848295'
2026-04-27 11:37:57 (15612): Status Report: CPU Time: '117717.093750'
2026-04-27 13:24:46 (15612): Status Report: Elapsed Time: '36004.829962'
2026-04-27 13:24:46 (15612): Status Report: CPU Time: '142023.171875'
2026-04-27 15:11:39 (15612): Status Report: Elapsed Time: '42005.291500'
2026-04-27 15:11:39 (15612): Status Report: CPU Time: '166225.125000'
2026-04-27 16:57:39 (15612): Status Report: Elapsed Time: '48006.694740'
2026-04-27 16:57:39 (15612): Status Report: CPU Time: '190320.828125'
2026-04-27 18:44:12 (15612): Status Report: Elapsed Time: '54006.743586'
2026-04-27 18:44:12 (15612): Status Report: CPU Time: '214540.453125'
2026-04-27 20:30:49 (15612): Status Report: Elapsed Time: '60007.269480'
2026-04-27 20:30:49 (15612): Status Report: CPU Time: '238825.750000'
2026-04-27 22:18:01 (15612): Status Report: Elapsed Time: '66008.133453'
2026-04-27 22:18:01 (15612): Status Report: CPU Time: '263225.140625'
2026-04-27 22:45:00 (15612): Guest Log:  *** Job finished ***
2026-04-27 22:45:00 (15612): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-04-27 22:45:00 (15612): Guest Log: 2026-04-28 02:44:33,351 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-04-27 22:45:00 (15612): Guest Log: 2026-04-28 02:44:33,351 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-04-27 22:45:00 (15612): Guest Log: 2026-04-28 02:44:52,511 | INFO     | [monitor] cgroup control has ended
2026-04-27 22:45:00 (15612): Guest Log: 2026-04-28 02:44:53,822 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139898894387008)>', '<ExcThread(monitor, started 139898459764480)>']
2026-04-27 22:45:00 (15612): Guest Log: 2026-04-28 02:44:54,751 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-04-27 22:45:00 (15612): Guest Log: 2026-04-28 02:44:54,752 | INFO     | [monitor] control thread has ended
2026-04-27 22:45:00 (15612): Guest Log: 2026-04-28 02:44:58,828 | INFO     | all workflow threads have been joined
2026-04-27 22:45:00 (15612): Guest Log: 2026-04-28 02:44:58,829 | INFO     | end of generic workflow (traces error code: 0)
2026-04-27 22:45:00 (15612): Guest Log: 2026-04-28 02:44:58,829 | INFO     | traces error code: 0
2026-04-27 22:45:00 (15612): Guest Log: 2026-04-28 02:44:58,830 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-04-27 22:45:00 (15612): Guest Log: 2026-04-28 02:44:59,067 [wrapper] ==== pilot stdout END ====
2026-04-27 22:45:00 (15612): Guest Log: 2026-04-28 02:44:59,084 [wrapper] ==== wrapper stdout RESUME ====
2026-04-27 22:45:00 (15612): Guest Log: 2026-04-28 02:44:59,099 [wrapper] pilotpid: 6047
2026-04-27 22:45:00 (15612): Guest Log: 2026-04-28 02:44:59,116 [wrapper] Pilot exit status: 0
2026-04-27 22:45:00 (15612): Guest Log: 2026-04-28 02:44:59,207 [wrapper] pandaids: 7116177201
2026-04-27 22:45:00 (15612): Guest Log: 2026-04-28 02:44:59,316 [wrapper] cleanup supervisor_pilot 16024 6048
2026-04-27 22:45:00 (15612): Guest Log: 2026-04-28 02:44:59,332 [wrapper] Test setup, not cleaning
2026-04-27 22:45:00 (15612): Guest Log: 2026-04-28 02:44:59,349 [wrapper] apfmon messages muted
2026-04-27 22:45:00 (15612): Guest Log: 2026-04-28 02:44:59,368 [wrapper] ==== wrapper stdout END ====
2026-04-27 22:45:00 (15612): Guest Log: 2026-04-28 02:44:59,386 [wrapper] ==== wrapper stderr END ====
2026-04-27 22:45:00 (15612): Guest Log:  *** Error codes and diagnostics ***
2026-04-27 22:45:00 (15612): Guest Log:     "exeErrorCode": 0,
2026-04-27 22:45:00 (15612): Guest Log:     "pilotErrorCode": 0,
2026-04-27 22:45:00 (15612): Guest Log:  *** Listing of results directory ***
2026-04-27 22:45:00 (15612): Guest Log: total 282144
2026-04-27 22:45:00 (15612): Guest Log: -rwx------. 1 atlas atlas     36322 Apr 26 19:32 runpilot2-wrapper.sh
2026-04-27 22:45:00 (15612): Guest Log: -rw-r--r--. 1 atlas atlas      5631 Apr 26 19:34 queuedata.json
2026-04-27 22:45:00 (15612): Guest Log: -rw-r--r--. 1 atlas atlas    683926 Apr 26 19:34 pilot3.tar.gz
2026-04-27 22:45:00 (15612): Guest Log: -rwxr-xr-x. 1 atlas atlas      5841 Apr 27 06:44 init_data.xml
2026-04-27 22:45:00 (15612): Guest Log: -rwxr-xr-x. 1 atlas atlas    697408 Apr 27 06:44 input.tar.gz
2026-04-27 22:45:00 (15612): Guest Log: -rwxr-xr-x. 1 atlas atlas     15667 Apr 27 06:44 start_atlas.sh
2026-04-27 22:45:00 (15612): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 27 06:44 EVNT.49820242._000006.pool.root.1 -> /data/./ATLAS.root_0
2026-04-27 22:45:00 (15612): Guest Log: -rw-r--r--. 1 atlas atlas      2548 Apr 27 06:45 pandaJob.out
2026-04-27 22:45:00 (15612): Guest Log: -rw-------. 1 atlas atlas    996810 Apr 27 06:46 agis_schedconf.cvmfs.json
2026-04-27 22:45:00 (15612): Guest Log: -rw-------. 1 atlas atlas       427 Apr 27 06:46 workernode_map.json
2026-04-27 22:45:00 (15612): Guest Log: drwx------. 5 atlas atlas      4096 Apr 27 06:46 pilot3
2026-04-27 22:45:00 (15612): Guest Log: -rw-------. 1 atlas atlas 270568380 Apr 28 02:42 HITS.49820244._016609.pool.root.1
2026-04-27 22:45:00 (15612): Guest Log: -rw-------. 1 atlas atlas        95 Apr 28 02:43 pilot_heartbeat.json
2026-04-27 22:45:00 (15612): Guest Log: -rw-------. 1 atlas atlas      1028 Apr 28 02:43 memory_monitor_summary.json
2026-04-27 22:45:00 (15612): Guest Log: -rw-------. 1 atlas atlas   1512704 Apr 28 02:43 agis_ddmendpoints.agis.ALL.json
2026-04-27 22:45:00 (15612): Guest Log: -rw-------. 1 atlas atlas    910144 Apr 28 02:43 log.49820244._016609.job.log.tgz.1
2026-04-27 22:45:00 (15612): Guest Log: -rw-------. 1 atlas atlas      6398 Apr 28 02:44 heartbeat_new.json
2026-04-27 22:45:00 (15612): Guest Log: -rw-------. 1 atlas atlas      6289 Apr 28 02:44 heartbeat.json
2026-04-27 22:45:00 (15612): Guest Log: -rw-------. 1 atlas atlas      4804 Apr 28 02:44 pilotlog.txt
2026-04-27 22:45:00 (15612): Guest Log: -rw-------. 1 atlas atlas   6227292 Apr 28 02:44 log.49820244._016609.job.log.1
2026-04-27 22:45:00 (15612): Guest Log: -rw-------. 1 atlas atlas       357 Apr 28 02:44 output.list
2026-04-27 22:45:00 (15612): Guest Log: -rw-r--r--. 1 atlas atlas       410 Apr 28 02:44 runtime_log
2026-04-27 22:45:00 (15612): Guest Log: -rw-------. 1 atlas atlas   7157760 Apr 28 02:44 result.tar.gz
2026-04-27 22:45:00 (15612): Guest Log: -rw-r--r--. 1 atlas atlas      8363 Apr 28 02:44 runtime_log.err
2026-04-27 22:45:00 (15612): Guest Log: -rw-------. 1 atlas atlas       656 Apr 28 02:44 683afb9d3bc3.diag
2026-04-27 22:45:00 (15612): Guest Log: Looking for outputfile HITS.49820244._016609.pool.root.1
2026-04-27 22:45:00 (15612): Guest Log: HITS file was successfully produced
2026-04-27 22:45:00 (15612): Guest Log: -rw-------. 1 atlas atlas 270568380 Apr 28 02:42 /home/atlas/RunAtlas/HITS.49820244._016609.pool.root.1
2026-04-27 22:45:04 (15612): Guest Log: Successfully finished the ATLAS job!
2026-04-27 22:45:04 (15612): Guest Log: Copying the results back to the shared directory!
2026-04-27 22:45:05 (15612): Guest Log:  *** Contents of shared directory: ***
2026-04-27 22:45:05 (15612): Guest Log: total 2470032
2026-04-27 22:45:05 (15612): Guest Log: -rwxrwxrwx. 1 root root 2250858422 Apr 27 06:42 ATLAS.root_0
2026-04-27 22:45:05 (15612): Guest Log: -rwxrwxrwx. 1 root root  270568380 Apr 28 02:45 HITS.pool.root.1
2026-04-27 22:45:05 (15612): Guest Log: -rwxrwxrwx. 1 root root       5841 Apr 27 06:42 init_data.xml
2026-04-27 22:45:05 (15612): Guest Log: -rwxrwxrwx. 1 root root     697408 Apr 26 22:20 input.tar.gz
2026-04-27 22:45:05 (15612): Guest Log: -rwxrwxrwx. 1 root root    7157760 Apr 28 02:45 result.tar.gz
2026-04-27 22:45:05 (15612): Guest Log: -rwxrwxrwx. 1 root root      15667 Apr 26 22:20 start_atlas.sh
2026-04-27 22:45:05 (15612): Guest Log:  *** Success! Shutting down the machine. ***
2026-04-27 22:45:05 (15612): VM Completion File Detected.
2026-04-27 22:45:05 (15612): Powering off VM.
2026-04-27 22:45:07 (15612): Successfully stopped VM.
2026-04-27 22:45:07 (15612): Deregistering VM. (boinc_66952e6488b871e2, slot#1)
2026-04-27 22:45:07 (15612): Removing network bandwidth throttle group from VM.
2026-04-27 22:45:07 (15612): Removing VM from VirtualBox.
2026-04-27 22:45:13 (15612): called boinc_finish(0)

</stderr_txt>
]]>

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