Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:12:32 (12298): wrapper (7.7.26015): starting
10:12:32 (12298): wrapper: running run_atlas (--nthreads 8)
[2026-04-27 10:12:32] Arguments: --nthreads 8
[2026-04-27 10:12:32] Threads: 8
[2026-04-27 10:12:32] Checking for CVMFS
[2026-04-27 10:12:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-27 10:12:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-27 10:12:35] Running cvmfs_config stat atlas.cern.ch
[2026-04-27 10:12:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-27 10:12:37] 2.11.2.0 16103 16734 101348 158919 2 54 17175296 25165825 96 130560 0 6129359 99.938 4811371 13185 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-27 10:12:37] CVMFS is ok
[2026-04-27 10:12:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-27 10:12:37] Checking for apptainer binary...
[2026-04-27 10:12:37] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-27 10:12:37] Running /usr/bin/apptainer --version
[2026-04-27 10:12:37] apptainer version 1.3.2-1.el7
[2026-04-27 10:12:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-27 10:12:48] cg-vwn420.simple-grid.lan
[2026-04-27 10:12:48] apptainer works
[2026-04-27 10:12:48] Set ATHENA_PROC_NUMBER=8
[2026-04-27 10:12:48] Set ATHENA_CORE_NUMBER=8
[2026-04-27 10:12:49] Starting ATLAS job with PandaID=7116177264
[2026-04-27 10:12:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-27 17:48:20]  *** The last 200 lines of the pilot log: ***
[2026-04-27 17:48:20] 2026-04-27 15:47:15,827 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-27 17:48:20] 2026-04-27 15:47:15,827 | INFO     | log transfer has been attempted: DONE
[2026-04-27 17:48:20] 2026-04-27 15:47:15,827 | INFO     | job 7116177264 has finished - writing final server update
[2026-04-27 17:48:20] 2026-04-27 15:47:15,828 | INFO     | total number of processed events: 400 (read)
[2026-04-27 17:48:20] 2026-04-27 15:47:15,830 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-7116177264/memory_monitor_summary.json (trf name=prmon)
[2026-04-27 17:48:20] 2026-04-27 15:47:15,831 | INFO     | extracted standard info from prmon json
[2026-04-27 17:48:20] 2026-04-27 15:47:15,831 | INFO     | extracted standard memory fields from prmon json
[2026-04-27 17:48:20] 2026-04-27 15:47:15,831 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-27 17:48:20] 2026-04-27 15:47:15,832 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-27 17:48:20] 2026-04-27 15:47:15,841 | INFO     | fitting pss+swap vs Time
[2026-04-27 17:48:20] 2026-04-27 15:47:15,842 | INFO     | sum of square deviations: 25348093872.5
[2026-04-27 17:48:20] 2026-04-27 15:47:15,849 | INFO     | sum of deviations: 162206314143.99994
[2026-04-27 17:48:20] 2026-04-27 15:47:15,849 | INFO     | mean x (centered): 0.0
[2026-04-27 17:48:20] 2026-04-27 15:47:15,849 | INFO     | mean y: 2521377.603686636
[2026-04-27 17:48:20] 2026-04-27 15:47:15,849 | INFO     | intersect: 2521377.603686636
[2026-04-27 17:48:20] 2026-04-27 15:47:15,850 | INFO     | chi2: 9.9491429762
[2026-04-27 17:48:20] 2026-04-27 15:47:15,851 | INFO     | sum of square deviations: 24482059030.0
[2026-04-27 17:48:20] 2026-04-27 15:47:15,858 | INFO     | sum of deviations: 220846259829.0
[2026-04-27 17:48:20] 2026-04-27 15:47:15,858 | INFO     | mean x (centered): 0.0
[2026-04-27 17:48:20] 2026-04-27 15:47:15,858 | INFO     | mean y: 2531629.713286713
[2026-04-27 17:48:20] 2026-04-27 15:47:15,858 | INFO     | intersect: 2531629.713286713
[2026-04-27 17:48:20] 2026-04-27 15:47:15,859 | INFO     | chi2: 8.411818848854695
[2026-04-27 17:48:20] 2026-04-27 15:47:15,859 | INFO     | current chi2=8.411818848854695 (change=15.451824654875685 %)
[2026-04-27 17:48:20] 2026-04-27 15:47:15,859 | INFO     | right removable region: 428
[2026-04-27 17:48:20] 2026-04-27 15:47:15,860 | INFO     | sum of square deviations: 24482059030.0
[2026-04-27 17:48:20] 2026-04-27 15:47:15,866 | INFO     | sum of deviations: 190677948.0000496
[2026-04-27 17:48:20] 2026-04-27 15:47:15,867 | INFO     | mean x (centered): 0.0
[2026-04-27 17:48:20] 2026-04-27 15:47:15,867 | INFO     | mean y: 2549900.9487179485
[2026-04-27 17:48:20] 2026-04-27 15:47:15,867 | INFO     | intersect: 2549900.9487179485
[2026-04-27 17:48:20] 2026-04-27 15:47:15,868 | INFO     | chi2: 4.811926631972878
[2026-04-27 17:48:20] 2026-04-27 15:47:15,868 | INFO     | current chi2=4.811926631972878 (change=51.63476247668966 %)
[2026-04-27 17:48:20] 2026-04-27 15:47:15,869 | INFO     | sum of square deviations: 23635978050.0
[2026-04-27 17:48:20] 2026-04-27 15:47:15,875 | INFO     | sum of deviations: -121096600004.0
[2026-04-27 17:48:20] 2026-04-27 15:47:15,876 | INFO     | mean x (centered): 0.0
[2026-04-27 17:48:20] 2026-04-27 15:47:15,876 | INFO     | mean y: 2571742.8726415094
[2026-04-27 17:48:20] 2026-04-27 15:47:15,876 | INFO     | intersect: 2571742.8726415094
[2026-04-27 17:48:20] 2026-04-27 15:47:15,877 | INFO     | chi2: 2.0274487154995073
[2026-04-27 17:48:20] 2026-04-27 15:47:15,877 | INFO     | current chi2=2.0274487154995073 (change=57.866175638919536 %)
[2026-04-27 17:48:20] 2026-04-27 15:47:15,878 | INFO     | sum of square deviations: 22809618370.0
[2026-04-27 17:48:20] 2026-04-27 15:47:15,884 | INFO     | sum of deviations: -141298449037.0
[2026-04-27 17:48:20] 2026-04-27 15:47:15,884 | INFO     | mean x (centered): 0.0
[2026-04-27 17:48:20] 2026-04-27 15:47:15,884 | INFO     | mean y: 2575457.692124105
[2026-04-27 17:48:20] 2026-04-27 15:47:15,885 | INFO     | intersect: 2575457.692124105
[2026-04-27 17:48:20] 2026-04-27 15:47:15,885 | INFO     | chi2: 1.9071362973796937
[2026-04-27 17:48:20] 2026-04-27 15:47:15,886 | INFO     | current chi2=1.9071362973796937 (change=5.93417812248691 %)
[2026-04-27 17:48:20] 2026-04-27 15:47:15,886 | INFO     | left removable region: 15
[2026-04-27 17:48:20] 2026-04-27 15:47:15,886 | INFO     | sum of square deviations: 21843691422.0
[2026-04-27 17:48:20] 2026-04-27 15:47:15,892 | INFO     | sum of deviations: -81023053030.99998
[2026-04-27 17:48:20] 2026-04-27 15:47:15,893 | INFO     | mean x (centered): 0.0
[2026-04-27 17:48:20] 2026-04-27 15:47:15,893 | INFO     | mean y: 2586771.2179176756
[2026-04-27 17:48:20] 2026-04-27 15:47:15,893 | INFO     | intersect: 2586771.2179176756
[2026-04-27 17:48:20] 2026-04-27 15:47:15,894 | INFO     | chi2: 0.2510192070739883
[2026-04-27 17:48:20] 2026-04-27 15:47:15,894 | INFO     | current memory leak: -3.71 B/s (using 413 data points, chi2=0.25)
[2026-04-27 17:48:20] 2026-04-27 15:47:15,895 | INFO     | could have reported an average CPU frequency of 1999 MHz (18 samples)
[2026-04-27 17:48:20] 2026-04-27 15:47:15,895 | INFO     | ..............................
[2026-04-27 17:48:20] 2026-04-27 15:47:15,895 | INFO     | . Timing measurements:
[2026-04-27 17:48:20] 2026-04-27 15:47:15,895 | INFO     | . get job = 0 s
[2026-04-27 17:48:20] 2026-04-27 15:47:15,895 | INFO     | . initial setup = 121 s
[2026-04-27 17:48:20] 2026-04-27 15:47:15,895 | INFO     | . payload setup = 286 s
[2026-04-27 17:48:20] 2026-04-27 15:47:15,896 | INFO     | . stage-in = 0 s
[2026-04-27 17:48:20] 2026-04-27 15:47:15,896 | INFO     | . payload execution = 26561 s
[2026-04-27 17:48:20] 2026-04-27 15:47:15,896 | INFO     | . stage-out = 4 s
[2026-04-27 17:48:20] 2026-04-27 15:47:15,896 | INFO     | . log creation = 1 s
[2026-04-27 17:48:20] 2026-04-27 15:47:15,896 | INFO     | ..............................
[2026-04-27 17:48:20] 2026-04-27 15:47:16,088 | INFO     | 
[2026-04-27 17:48:20] 2026-04-27 15:47:16,088 | INFO     | job summary report
[2026-04-27 17:48:20] 2026-04-27 15:47:16,088 | INFO     | --------------------------------------------------
[2026-04-27 17:48:20] 2026-04-27 15:47:16,088 | INFO     | PanDA job id: 7116177264
[2026-04-27 17:48:20] 2026-04-27 15:47:16,088 | INFO     | task id: 49820244
[2026-04-27 17:48:20] 2026-04-27 15:47:16,088 | INFO     | errors: (none)
[2026-04-27 17:48:20] 2026-04-27 15:47:16,089 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-27 17:48:20] 2026-04-27 15:47:16,089 | INFO     | pilot state: finished 
[2026-04-27 17:48:20] 2026-04-27 15:47:16,089 | INFO     | transexitcode: 0
[2026-04-27 17:48:20] 2026-04-27 15:47:16,089 | INFO     | exeerrorcode: 0
[2026-04-27 17:48:20] 2026-04-27 15:47:16,089 | INFO     | exeerrordiag: 
[2026-04-27 17:48:20] 2026-04-27 15:47:16,089 | INFO     | exitcode: 0
[2026-04-27 17:48:20] 2026-04-27 15:47:16,089 | INFO     | exitmsg: OK
[2026-04-27 17:48:20] 2026-04-27 15:47:16,089 | INFO     | cpuconsumptiontime: 102357 s
[2026-04-27 17:48:20] 2026-04-27 15:47:16,089 | INFO     | nevents: 400
[2026-04-27 17:48:20] 2026-04-27 15:47:16,089 | INFO     | neventsw: 0
[2026-04-27 17:48:20] 2026-04-27 15:47:16,089 | INFO     | pid: 20776
[2026-04-27 17:48:20] 2026-04-27 15:47:16,090 | INFO     | pgrp: 20776
[2026-04-27 17:48:20] 2026-04-27 15:47:16,090 | INFO     | corecount: 8
[2026-04-27 17:48:20] 2026-04-27 15:47:16,090 | INFO     | event service: False
[2026-04-27 17:48:20] 2026-04-27 15:47:16,090 | INFO     | sizes: {0: 2273967, 1: 2274879, 2: 2276481, 13: 2276481, 26852: 2312906, 26858: 2321608, 26859: 2321986}
[2026-04-27 17:48:20] 2026-04-27 15:47:16,090 | INFO     | --------------------------------------------------
[2026-04-27 17:48:20] 2026-04-27 15:47:16,090 | INFO     | 
[2026-04-27 17:48:20] 2026-04-27 15:47:16,090 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2026-04-27 17:48:20] 2026-04-27 15:47:16,532 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-27 17:48:20] 2026-04-27 15:47:16,532 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-27 17:48:20] 2026-04-27 15:47:16,533 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-27 17:48:20] 2026-04-27 15:47:16,533 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-27 17:48:20] 2026-04-27 15:47:16,533 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-27 17:48:20] 2026-04-27 15:47:16,533 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-27 17:48:20] 2026-04-27 15:47:16,533 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-27 17:48:20] 2026-04-27 15:47:16,533 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-27 17:48:20] 2026-04-27 15:47:16,533 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-27 17:48:20] 2026-04-27 15:47:16,533 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-27 17:48:20] 2026-04-27 15:47:16,533 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-27 17:48:20] 2026-04-27 15:47:16,534 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-27 17:48:20] 2026-04-27 15:47:16,534 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-27 17:48:20] 2026-04-27 15:47:16,534 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-27 17:48:20] 2026-04-27 15:47:16,534 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-27 17:48:20] 2026-04-27 15:47:16,534 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-27 17:48:20] 2026-04-27 15:47:16,534 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-27 17:48:20] 2026-04-27 15:47:16,534 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-27 17:48:20] 2026-04-27 15:47:16,534 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-27 17:48:20] 2026-04-27 15:47:16,534 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-27 17:48:20] 2026-04-27 15:47:16,535 | INFO     | job 7116177264 has completed (purged errors)
[2026-04-27 17:48:20] 2026-04-27 15:47:16,535 | INFO     | overall cleanup function is called
[2026-04-27 17:48:20] 2026-04-27 15:47:17,544 | INFO     | --- collectZombieJob: --- 10, [20776]
[2026-04-27 17:48:20] 2026-04-27 15:47:17,544 | INFO     | zombie collector waiting for pid 20776
[2026-04-27 17:48:20] 2026-04-27 15:47:17,544 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-27 17:48:20] 2026-04-27 15:47:17,544 | INFO     | collected zombie processes
[2026-04-27 17:48:20] 2026-04-27 15:47:17,544 | INFO     | will attempt to kill all subprocesses of pid=20776
[2026-04-27 17:48:20] 2026-04-27 15:47:17,614 | INFO     | process IDs to be killed: [20776] (in reverse order)
[2026-04-27 17:48:20] 2026-04-27 15:47:18,290 | WARNING  | found no corresponding commands to process id(s)
[2026-04-27 17:48:20] 2026-04-27 15:47:18,291 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-27 17:48:20] 2026-04-27 15:47:18,293 | INFO     | did not find any defunct processes belonging to 20776
[2026-04-27 17:48:20] 2026-04-27 15:47:18,294 | INFO     | did not find any defunct processes belonging to 20776
[2026-04-27 17:48:20] 2026-04-27 15:47:18,295 | INFO     | Ready for new job
[2026-04-27 17:48:20] 2026-04-27 15:47:18,297 | INFO     | ***************************************
[2026-04-27 17:48:20] 2026-04-27 15:47:18,297 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-27 17:48:20] 2026-04-27 15:47:18,297 | INFO     | ***************************************
[2026-04-27 17:48:20] 2026-04-27 15:47:18,297 | INFO     | 
[2026-04-27 17:48:20] 2026-04-27 15:47:18,298 | INFO     | pilot is running in a VM
[2026-04-27 17:48:20] 2026-04-27 15:47:18,298 | INFO     | architecture information:
[2026-04-27 17:48:20] 2026-04-27 15:47:18,310 | INFO     | executing command: cat /etc/os-release
[2026-04-27 17:48:20] 2026-04-27 15:47:18,515 | INFO     | cat /etc/os-release:
[2026-04-27 17:48:20] NAME="CentOS Linux"
[2026-04-27 17:48:20] VERSION="7 (Core)"
[2026-04-27 17:48:20] ID="centos"
[2026-04-27 17:48:20] ID_LIKE="rhel fedora"
[2026-04-27 17:48:20] VERSION_ID="7"
[2026-04-27 17:48:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-27 17:48:20] ANSI_COLOR="0;31"
[2026-04-27 17:48:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-27 17:48:20] HOME_URL="https://www.centos.org/"
[2026-04-27 17:48:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-27 17:48:20] 
[2026-04-27 17:48:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-27 17:48:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-27 17:48:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-27 17:48:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-27 17:48:20] 
[2026-04-27 17:48:20] 2026-04-27 15:47:18,515 | INFO     | ***************************************
[2026-04-27 17:48:20] 2026-04-27 15:47:19,020 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2026-04-27 17:48:20] 2026-04-27 15:47:19,227 | INFO     | sufficient remaining disk space (489642000384 B)
[2026-04-27 17:48:20] 2026-04-27 15:47:19,228 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-27 17:48:20] 2026-04-27 15:47:19,228 | INFO     | current server update state: UPDATING_FINAL
[2026-04-27 17:48:20] 2026-04-27 15:47:19,228 | INFO     | update_server=False
[2026-04-27 17:48:20] 2026-04-27 15:47:19,228 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-27 17:48:20] 2026-04-27 15:47:19,229 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-27 17:48:20] 2026-04-27 15:47:19,229 | INFO     | aborting loop
[2026-04-27 17:48:20] 2026-04-27 15:47:19,235 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-27 17:48:20] 2026-04-27 15:47:20,102 | INFO     | all payload control threads have been joined
[2026-04-27 17:48:20] 2026-04-27 15:47:20,234 | INFO     | [job] retrieve thread has finished
[2026-04-27 17:48:20] 2026-04-27 15:47:20,235 | INFO     | [job] job monitor thread has finished
[2026-04-27 17:48:20] 2026-04-27 15:47:20,250 | INFO     | all data control threads have been joined
[2026-04-27 17:48:20] 2026-04-27 15:47:20,319 | INFO     | all job control threads have been joined
[2026-04-27 17:48:20] 2026-04-27 15:47:20,507 | INFO     | [payload] execute_payloads thread has finished
[2026-04-27 17:48:20] 2026-04-27 15:47:20,796 | INFO     | [job] create_data_payload thread has finished
[2026-04-27 17:48:20] 2026-04-27 15:47:20,919 | INFO     | [payload] validate_pre thread has finished
[2026-04-27 17:48:20] 2026-04-27 15:47:20,925 | INFO     | [data] copytool_in thread has finished
[2026-04-27 17:48:20] 2026-04-27 15:47:21,103 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-27 17:48:20] 2026-04-27 15:47:21,108 | INFO     | [payload] control thread has finished
[2026-04-27 17:48:20] 2026-04-27 15:47:21,242 | INFO     | [data] copytool_out thread has finished
[2026-04-27 17:48:20] 2026-04-27 15:47:21,256 | INFO     | [data] control thread has finished
[2026-04-27 17:48:20] 2026-04-27 15:47:21,260 | INFO     | [job] validate thread has finished
[2026-04-27 17:48:20] 2026-04-27 15:47:21,325 | INFO     | [job] control thread has finished
[2026-04-27 17:48:20] 2026-04-27 15:47:21,355 | INFO     | [payload] validate_post thread has finished
[2026-04-27 17:48:20] 2026-04-27 15:47:21,428 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-27 17:48:20] 2026-04-27 15:47:21,589 | INFO     | [payload] failed_post thread has finished
[2026-04-27 17:48:20] 2026-04-27 15:47:21,822 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-27 17:48:20] 2026-04-27 15:47:22,109 | INFO     | [job] queue monitor thread has finished
[2026-04-27 17:48:20] 2026-04-27 15:47:25,831 | INFO     | [data] queue_monitor thread has finished
[2026-04-27 17:48:20] 2026-04-27 15:47:38,376 [wrapper] supervise_pilot (15 min periods counter: 31)
[2026-04-27 17:48:20] 2026-04-27 15:47:48,219 | INFO     | PID=16310 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-27 17:48:20] 2026-04-27 15:47:48,219 | INFO     | .. there are 2 such processes running
[2026-04-27 17:48:20] 2026-04-27 15:47:48,220 | INFO     | found 0 job(s) in 20 queues
[2026-04-27 17:48:20] 2026-04-27 15:47:48,220 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-27 17:48:20] 2026-04-27 15:47:48,220 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-27 17:48:20] 2026-04-27 15:48:09,502 | INFO     | [monitor] cgroup control has ended
[2026-04-27 17:48:20] 2026-04-27 15:48:10,601 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140197814126400)>', '<ExcThread(monitor, started 140197387822848)>']
[2026-04-27 17:48:20] 2026-04-27 15:48:11,358 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-27 17:48:20] 2026-04-27 15:48:11,358 | INFO     | [monitor] control thread has ended
[2026-04-27 17:48:20] 2026-04-27 15:48:15,627 | INFO     | all workflow threads have been joined
[2026-04-27 17:48:20] 2026-04-27 15:48:15,627 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-27 17:48:20] 2026-04-27 15:48:15,627 | INFO     | traces error code: 0
[2026-04-27 17:48:20] 2026-04-27 15:48:15,627 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-27 17:48:20] 2026-04-27 15:48:16,121 [wrapper] ==== pilot stdout END ====
[2026-04-27 17:48:20] 2026-04-27 15:48:16,238 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-27 17:48:20] 2026-04-27 15:48:16,379 [wrapper] pilotpid: 16310
[2026-04-27 17:48:20] 2026-04-27 15:48:16,514 [wrapper] Pilot exit status: 0
[2026-04-27 17:48:20] 2026-04-27 15:48:17,068 [wrapper] pandaids: 7116177264
[2026-04-27 17:48:20] 2026-04-27 15:48:17,913 [wrapper] cleanup supervisor_pilot 29826 16311
[2026-04-27 17:48:20] 2026-04-27 15:48:18,031 [wrapper] Test setup, not cleaning
[2026-04-27 17:48:20] 2026-04-27 15:48:18,098 [wrapper] apfmon messages muted
[2026-04-27 17:48:20] 2026-04-27 15:48:18,203 [wrapper] ==== wrapper stdout END ====
[2026-04-27 17:48:20] 2026-04-27 15:48:18,284 [wrapper] ==== wrapper stderr END ====
[2026-04-27 17:48:20]  *** Error codes and diagnostics ***
[2026-04-27 17:48:20]     "exeErrorCode": 0,
[2026-04-27 17:48:20]     "pilotErrorCode": 0,
[2026-04-27 17:48:20]  *** Listing of results directory ***
[2026-04-27 17:48:20] total 2480564
[2026-04-27 17:48:20] -rwx------. 1 boinc boinc      36322 Apr 26 21:29 runpilot2-wrapper.sh
[2026-04-27 17:48:20] -rw-r--r--. 1 boinc boinc       5631 Apr 26 21:29 queuedata.json
[2026-04-27 17:48:20] -rw-r--r--. 1 boinc boinc     683926 Apr 26 21:29 pilot3.tar.gz
[2026-04-27 17:48:20] -rw-r--r--. 1 boinc boinc        100 Apr 27 10:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-27 17:48:20] -rwxr-xr-x. 1 boinc boinc       7986 Apr 27 10:12 run_atlas
[2026-04-27 17:48:20] -rw-r--r--. 1 boinc boinc        105 Apr 27 10:12 job.xml
[2026-04-27 17:48:20] -rw-r--r--. 2 boinc boinc 2250858422 Apr 27 10:12 EVNT.49820242._000006.pool.root.1
[2026-04-27 17:48:20] -rw-r--r--. 1 boinc boinc       6306 Apr 27 10:12 init_data.xml
[2026-04-27 17:48:20] -rw-r--r--. 2 boinc boinc      15667 Apr 27 10:12 start_atlas.sh
[2026-04-27 17:48:20] drwxrwx--x. 2 boinc boinc         68 Apr 27 10:12 shared
[2026-04-27 17:48:20] -rw-r--r--. 2 boinc boinc     697403 Apr 27 10:12 input.tar.gz
[2026-04-27 17:48:20] -rw-r--r--. 1 boinc boinc          0 Apr 27 10:12 boinc_lockfile
[2026-04-27 17:48:20] -rw-r--r--. 1 boinc boinc       2548 Apr 27 10:12 pandaJob.out
[2026-04-27 17:48:20] -rw-------. 1 boinc boinc        415 Apr 27 10:19 workernode_map.json
[2026-04-27 17:48:20] -rw-------. 1 boinc boinc     996863 Apr 27 10:19 agis_schedconf.cvmfs.json
[2026-04-27 17:48:20] drwx------. 5 boinc boinc       4096 Apr 27 10:19 pilot3
[2026-04-27 17:48:20] -rw-------. 1 boinc boinc  279113840 Apr 27 17:45 HITS.49820244._016672.pool.root.1
[2026-04-27 17:48:20] -rw-r--r--. 1 boinc boinc        491 Apr 27 17:45 boinc_task_state.xml
[2026-04-27 17:48:20] -rw-------. 1 boinc boinc         95 Apr 27 17:46 pilot_heartbeat.json
[2026-04-27 17:48:20] -rw-------. 1 boinc boinc       1013 Apr 27 17:47 memory_monitor_summary.json
[2026-04-27 17:48:20] -rw-------. 1 boinc boinc    1508585 Apr 27 17:47 agis_ddmendpoints.agis.ALL.json
[2026-04-27 17:48:20] -rw-------. 1 boinc boinc     544386 Apr 27 17:47 log.49820244._016672.job.log.tgz.1
[2026-04-27 17:48:20] -rw-------. 1 boinc boinc       6340 Apr 27 17:47 heartbeat_new.json
[2026-04-27 17:48:20] -rw-------. 1 boinc boinc       6231 Apr 27 17:47 heartbeat.json
[2026-04-27 17:48:20] -rw-r--r--. 1 boinc boinc       8192 Apr 27 17:48 boinc_mmap_file
[2026-04-27 17:48:20] -rw-r--r--. 1 boinc boinc         29 Apr 27 17:48 wrapper_checkpoint.txt
[2026-04-27 17:48:20] -rw-------. 1 boinc boinc       4883 Apr 27 17:48 pilotlog.txt
[2026-04-27 17:48:20] -rw-------. 1 boinc boinc    2455029 Apr 27 17:48 log.49820244._016672.job.log.1
[2026-04-27 17:48:20] -rw-------. 1 boinc boinc        357 Apr 27 17:48 output.list
[2026-04-27 17:48:20] -rw-r--r--. 1 boinc boinc        410 Apr 27 17:48 runtime_log
[2026-04-27 17:48:20] -rw-------. 1 boinc boinc    3020800 Apr 27 17:48 result.tar.gz
[2026-04-27 17:48:20] -rw-r--r--. 1 boinc boinc       8439 Apr 27 17:48 runtime_log.err
[2026-04-27 17:48:20] -rw-------. 1 boinc boinc        658 Apr 27 17:48 6784dd1ae423.diag
[2026-04-27 17:48:20] -rw-r--r--. 1 boinc boinc      20561 Apr 27 17:48 stderr.txt
[2026-04-27 17:48:21] HITS file was successfully produced:
[2026-04-27 17:48:21] -rw-------. 1 boinc boinc 279113840 Apr 27 17:45 shared/HITS.pool.root.1
[2026-04-27 17:48:21]  *** Contents of shared directory: ***
[2026-04-27 17:48:21] total 2474332
[2026-04-27 17:48:21] -rw-r--r--. 2 boinc boinc 2250858422 Apr 27 10:12 ATLAS.root_0
[2026-04-27 17:48:21] -rw-r--r--. 2 boinc boinc      15667 Apr 27 10:12 start_atlas.sh
[2026-04-27 17:48:21] -rw-r--r--. 2 boinc boinc     697403 Apr 27 10:12 input.tar.gz
[2026-04-27 17:48:21] -rw-------. 1 boinc boinc  279113840 Apr 27 17:45 HITS.pool.root.1
[2026-04-27 17:48:21] -rw-------. 1 boinc boinc    3020800 Apr 27 17:48 result.tar.gz
17:48:22 (12298): run_atlas exited; CPU time 102632.798760
17:48:22 (12298): called boinc_finish(0)

</stderr_txt>
]]>

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