Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:37:22 (3551983): wrapper (7.7.26015): starting
11:37:22 (3551983): wrapper: running run_atlas (--nthreads 4)
[2026-04-28 11:37:22] Arguments: --nthreads 4
[2026-04-28 11:37:22] Threads: 4
[2026-04-28 11:37:22] Checking for CVMFS
[2026-04-28 11:37:22] No cvmfs_config command found, will try listing directly
[2026-04-28 11:37:22] CVMFS is ok
[2026-04-28 11:37:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-28 11:37:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-28 11:37:22] Further information can be found at the LHC@home message board.
[2026-04-28 11:37:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-28 11:37:22] Checking for apptainer binary...
[2026-04-28 11:37:22] which: no apptainer in ((null))
[2026-04-28 11:37:22] apptainer is not installed, using version from CVMFS
[2026-04-28 11:37:22] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-28 11:37:23] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot96/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2026-04-28 11:37:23] apptainer works
[2026-04-28 11:37:23] Set ATHENA_PROC_NUMBER=4
[2026-04-28 11:37:23] Set ATHENA_CORE_NUMBER=4
[2026-04-28 11:37:23] Starting ATLAS job with PandaID=7116129847
[2026-04-28 11:37:23] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot96/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-28 14:33:10]  *** The last 200 lines of the pilot log: ***
[2026-04-28 14:33:10] 2026-04-28 12:32:01,461 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-28 14:33:10] 2026-04-28 12:32:01,630 | INFO     | job 7116129847 has state=finished
[2026-04-28 14:33:10] 2026-04-28 12:32:01,631 | INFO     | preparing for final server update for job 7116129847 in state='finished'
[2026-04-28 14:33:10] 2026-04-28 12:32:01,631 | INFO     | reading metadata from: /var/lib/boinc/var/slot96/slots/1/PanDA_Pilot-7116129847/jobReport.json
[2026-04-28 14:33:10] 2026-04-28 12:32:01,635 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot96/slots/1/workernode_map.json
[2026-04-28 14:33:10] 2026-04-28 12:32:01,635 | INFO     | this job has now completed (state=finished)
[2026-04-28 14:33:10] 2026-04-28 12:32:01,635 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-28 14:33:10] 2026-04-28 12:32:01,635 | INFO     | log transfer has been attempted: DONE
[2026-04-28 14:33:10] 2026-04-28 12:32:01,636 | INFO     | job 7116129847 has finished - writing final server update
[2026-04-28 14:33:10] 2026-04-28 12:32:01,636 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3102972/.job.ad'
[2026-04-28 14:33:10] 2026-04-28 12:32:01,636 | INFO     | total number of processed events: 400 (read)
[2026-04-28 14:33:10] 2026-04-28 12:32:01,663 | INFO     | using path: /var/lib/boinc/var/slot96/slots/1/PanDA_Pilot-7116129847/memory_monitor_summary.json (trf name=prmon)
[2026-04-28 14:33:10] 2026-04-28 12:32:01,664 | INFO     | extracted standard info from prmon json
[2026-04-28 14:33:10] 2026-04-28 12:32:01,664 | INFO     | extracted standard memory fields from prmon json
[2026-04-28 14:33:10] 2026-04-28 12:32:01,665 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-28 14:33:10] 2026-04-28 12:32:01,665 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-28 14:33:10] 2026-04-28 12:32:01,669 | INFO     | fitting pss+swap vs Time
[2026-04-28 14:33:10] 2026-04-28 12:32:01,670 | INFO     | sum of square deviations: 1550429070.0
[2026-04-28 14:33:10] 2026-04-28 12:32:01,671 | INFO     | sum of deviations: 11866218735.999998
[2026-04-28 14:33:10] 2026-04-28 12:32:01,671 | INFO     | mean x (centered): 0.0
[2026-04-28 14:33:10] 2026-04-28 12:32:01,671 | INFO     | mean y: 2334388.4385964912
[2026-04-28 14:33:10] 2026-04-28 12:32:01,671 | INFO     | intersect: 2334388.4385964912
[2026-04-28 14:33:10] 2026-04-28 12:32:01,671 | INFO     | chi2: 1.3619561682596735
[2026-04-28 14:33:10] 2026-04-28 12:32:01,672 | INFO     | sum of square deviations: 1418361477.5
[2026-04-28 14:33:10] 2026-04-28 12:32:01,673 | INFO     | sum of deviations: 11549426520.999998
[2026-04-28 14:33:10] 2026-04-28 12:32:01,673 | INFO     | mean x (centered): 0.0
[2026-04-28 14:33:10] 2026-04-28 12:32:01,673 | INFO     | mean y: 2334022.578313253
[2026-04-28 14:33:10] 2026-04-28 12:32:01,673 | INFO     | intersect: 2334022.578313253
[2026-04-28 14:33:10] 2026-04-28 12:32:01,674 | INFO     | chi2: 1.3631019589080189
[2026-04-28 14:33:10] 2026-04-28 12:32:01,674 | INFO     | current chi2=1.3631019589080189 (change=-0.08412830567150482 %)
[2026-04-28 14:33:10] 2026-04-28 12:32:01,674 | INFO     | right removable region: 165
[2026-04-28 14:33:10] 2026-04-28 12:32:01,674 | INFO     | sum of square deviations: 1418361477.5
[2026-04-28 14:33:10] 2026-04-28 12:32:01,675 | INFO     | sum of deviations: -9095585102.499992
[2026-04-28 14:33:10] 2026-04-28 12:32:01,675 | INFO     | mean x (centered): 0.0
[2026-04-28 14:33:10] 2026-04-28 12:32:01,675 | INFO     | mean y: 2358197.246987952
[2026-04-28 14:33:10] 2026-04-28 12:32:01,675 | INFO     | intersect: 2358197.246987952
[2026-04-28 14:33:10] 2026-04-28 12:32:01,676 | INFO     | chi2: 0.02917655321563996
[2026-04-28 14:33:10] 2026-04-28 12:32:01,676 | INFO     | current chi2=0.02917655321563996 (change=97.85774653431598 %)
[2026-04-28 14:33:10] 2026-04-28 12:32:01,676 | INFO     | sum of square deviations: 1294014960.0
[2026-04-28 14:33:10] 2026-04-28 12:32:01,677 | INFO     | sum of deviations: -6747554771.999999
[2026-04-28 14:33:10] 2026-04-28 12:32:01,677 | INFO     | mean x (centered): 0.0
[2026-04-28 14:33:10] 2026-04-28 12:32:01,677 | INFO     | mean y: 2355321.645962733
[2026-04-28 14:33:10] 2026-04-28 12:32:01,677 | INFO     | intersect: 2355321.645962733
[2026-04-28 14:33:10] 2026-04-28 12:32:01,678 | INFO     | chi2: 0.02539534606131175
[2026-04-28 14:33:10] 2026-04-28 12:32:01,678 | INFO     | current chi2=0.02539534606131175 (change=12.959745883558693 %)
[2026-04-28 14:33:10] 2026-04-28 12:32:01,678 | INFO     | left removable region: 10
[2026-04-28 14:33:10] 2026-04-28 12:32:01,678 | INFO     | sum of square deviations: 1154663510.0
[2026-04-28 14:33:10] 2026-04-28 12:32:01,679 | INFO     | sum of deviations: -6487852883.999999
[2026-04-28 14:33:10] 2026-04-28 12:32:01,679 | INFO     | mean x (centered): 0.0
[2026-04-28 14:33:10] 2026-04-28 12:32:01,679 | INFO     | mean y: 2355662.941935484
[2026-04-28 14:33:10] 2026-04-28 12:32:01,679 | INFO     | intersect: 2355662.941935484
[2026-04-28 14:33:10] 2026-04-28 12:32:01,680 | INFO     | chi2: 0.025069267693988248
[2026-04-28 14:33:10] 2026-04-28 12:32:01,680 | INFO     | current memory leak: -5.62 B/s (using 155 data points, chi2=0.03)
[2026-04-28 14:33:10] 2026-04-28 12:32:01,680 | INFO     | could have reported an average CPU frequency of 2666 MHz (9 samples)
[2026-04-28 14:33:10] 2026-04-28 12:32:01,680 | INFO     | ..............................
[2026-04-28 14:33:10] 2026-04-28 12:32:01,681 | INFO     | . Timing measurements:
[2026-04-28 14:33:10] 2026-04-28 12:32:01,681 | INFO     | . get job = 0 s
[2026-04-28 14:33:10] 2026-04-28 12:32:01,681 | INFO     | . initial setup = 9 s
[2026-04-28 14:33:10] 2026-04-28 12:32:01,681 | INFO     | . payload setup = 16 s
[2026-04-28 14:33:10] 2026-04-28 12:32:01,681 | INFO     | . stage-in = 0 s
[2026-04-28 14:33:10] 2026-04-28 12:32:01,681 | INFO     | . payload execution = 10419 s
[2026-04-28 14:33:10] 2026-04-28 12:32:01,681 | INFO     | . stage-out = 0 s
[2026-04-28 14:33:10] 2026-04-28 12:32:01,681 | INFO     | . log creation = 0 s
[2026-04-28 14:33:10] 2026-04-28 12:32:01,681 | INFO     | ..............................
[2026-04-28 14:33:10] 2026-04-28 12:32:02,016 | INFO     | 
[2026-04-28 14:33:10] 2026-04-28 12:32:02,016 | INFO     | job summary report
[2026-04-28 14:33:10] 2026-04-28 12:32:02,016 | INFO     | --------------------------------------------------
[2026-04-28 14:33:10] 2026-04-28 12:32:02,016 | INFO     | PanDA job id: 7116129847
[2026-04-28 14:33:10] 2026-04-28 12:32:02,016 | INFO     | task id: 49912801
[2026-04-28 14:33:10] 2026-04-28 12:32:02,017 | INFO     | errors: (none)
[2026-04-28 14:33:10] 2026-04-28 12:32:02,017 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-28 14:33:10] 2026-04-28 12:32:02,017 | INFO     | pilot state: finished 
[2026-04-28 14:33:10] 2026-04-28 12:32:02,017 | INFO     | transexitcode: 0
[2026-04-28 14:33:10] 2026-04-28 12:32:02,017 | INFO     | exeerrorcode: 0
[2026-04-28 14:33:10] 2026-04-28 12:32:02,017 | INFO     | exeerrordiag: 
[2026-04-28 14:33:10] 2026-04-28 12:32:02,017 | INFO     | exitcode: 0
[2026-04-28 14:33:10] 2026-04-28 12:32:02,017 | INFO     | exitmsg: OK
[2026-04-28 14:33:10] 2026-04-28 12:32:02,017 | INFO     | cpuconsumptiontime: 39291 s
[2026-04-28 14:33:10] 2026-04-28 12:32:02,017 | INFO     | nevents: 400
[2026-04-28 14:33:10] 2026-04-28 12:32:02,017 | INFO     | neventsw: 0
[2026-04-28 14:33:10] 2026-04-28 12:32:02,018 | INFO     | pid: 3561685
[2026-04-28 14:33:10] 2026-04-28 12:32:02,018 | INFO     | pgrp: 3561685
[2026-04-28 14:33:10] 2026-04-28 12:32:02,018 | INFO     | corecount: 4
[2026-04-28 14:33:10] 2026-04-28 12:32:02,018 | INFO     | event service: False
[2026-04-28 14:33:10] 2026-04-28 12:32:02,018 | INFO     | sizes: {0: 2282637, 11: 2282637, 10439: 2312020, 10441: 2321040, 10443: 2321354}
[2026-04-28 14:33:10] 2026-04-28 12:32:02,018 | INFO     | --------------------------------------------------
[2026-04-28 14:33:10] 2026-04-28 12:32:02,018 | INFO     | 
[2026-04-28 14:33:10] 2026-04-28 12:32:02,018 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot96/slots/1
[2026-04-28 14:33:10] 2026-04-28 12:32:02,050 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-28 14:33:10] 2026-04-28 12:32:02,051 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-28 14:33:10] 2026-04-28 12:32:02,051 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-28 14:33:10] 2026-04-28 12:32:02,051 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-28 14:33:10] 2026-04-28 12:32:02,051 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-28 14:33:10] 2026-04-28 12:32:02,051 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-28 14:33:10] 2026-04-28 12:32:02,051 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-28 14:33:10] 2026-04-28 12:32:02,051 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-28 14:33:10] 2026-04-28 12:32:02,051 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-28 14:33:10] 2026-04-28 12:32:02,052 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-28 14:33:10] 2026-04-28 12:32:02,052 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-28 14:33:10] 2026-04-28 12:32:02,052 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-28 14:33:10] 2026-04-28 12:32:02,052 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-28 14:33:10] 2026-04-28 12:32:02,052 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-28 14:33:10] 2026-04-28 12:32:02,052 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-28 14:33:10] 2026-04-28 12:32:02,052 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-28 14:33:10] 2026-04-28 12:32:02,052 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-28 14:33:10] 2026-04-28 12:32:02,052 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-28 14:33:10] 2026-04-28 12:32:02,052 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-28 14:33:10] 2026-04-28 12:32:02,052 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-28 14:33:10] 2026-04-28 12:32:02,053 | INFO     | job 7116129847 has completed (purged errors)
[2026-04-28 14:33:10] 2026-04-28 12:32:02,053 | INFO     | overall cleanup function is called
[2026-04-28 14:33:10] 2026-04-28 12:32:03,062 | INFO     | --- collectZombieJob: --- 10, [3561685]
[2026-04-28 14:33:10] 2026-04-28 12:32:03,062 | INFO     | zombie collector waiting for pid 3561685
[2026-04-28 14:33:10] 2026-04-28 12:32:03,062 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-28 14:33:10] 2026-04-28 12:32:03,063 | INFO     | collected zombie processes
[2026-04-28 14:33:10] 2026-04-28 12:32:03,063 | INFO     | will attempt to kill all subprocesses of pid=3561685
[2026-04-28 14:33:10] 2026-04-28 12:32:03,762 | INFO     | process IDs to be killed: [3561685] (in reverse order)
[2026-04-28 14:33:10] 2026-04-28 12:32:04,033 | WARNING  | found no corresponding commands to process id(s)
[2026-04-28 14:33:10] 2026-04-28 12:32:04,033 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-28 14:33:10] 2026-04-28 12:32:04,064 | INFO     | did not find any defunct processes belonging to 3561685
[2026-04-28 14:33:10] 2026-04-28 12:32:04,091 | INFO     | did not find any defunct processes belonging to 3561685
[2026-04-28 14:33:10] 2026-04-28 12:32:04,092 | INFO     | Ready for new job
[2026-04-28 14:33:10] 2026-04-28 12:32:04,094 | INFO     | ***************************************
[2026-04-28 14:33:10] 2026-04-28 12:32:04,097 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-28 14:33:10] 2026-04-28 12:32:04,097 | INFO     | ***************************************
[2026-04-28 14:33:10] 2026-04-28 12:32:04,097 | INFO     | 
[2026-04-28 14:33:10] 2026-04-28 12:32:04,105 | INFO     | architecture information:
[2026-04-28 14:33:10] 2026-04-28 12:32:04,106 | INFO     | executing command: cat /etc/os-release
[2026-04-28 14:33:10] 2026-04-28 12:32:04,127 | INFO     | cat /etc/os-release:
[2026-04-28 14:33:10] NAME="CentOS Linux"
[2026-04-28 14:33:10] VERSION="7 (Core)"
[2026-04-28 14:33:10] ID="centos"
[2026-04-28 14:33:10] ID_LIKE="rhel fedora"
[2026-04-28 14:33:10] VERSION_ID="7"
[2026-04-28 14:33:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-28 14:33:10] ANSI_COLOR="0;31"
[2026-04-28 14:33:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-28 14:33:10] HOME_URL="https://www.centos.org/"
[2026-04-28 14:33:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-28 14:33:10] 
[2026-04-28 14:33:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-28 14:33:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-28 14:33:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-28 14:33:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-28 14:33:10] 
[2026-04-28 14:33:10] 2026-04-28 12:32:04,127 | INFO     | ***************************************
[2026-04-28 14:33:10] 2026-04-28 12:32:04,630 | INFO     | executing command: df -mP /var/lib/boinc/var/slot96/slots/1
[2026-04-28 14:33:10] 2026-04-28 12:32:04,654 | INFO     | sufficient remaining disk space (19081986048 B)
[2026-04-28 14:33:10] 2026-04-28 12:32:04,654 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-28 14:33:10] 2026-04-28 12:32:04,654 | INFO     | current server update state: UPDATING_FINAL
[2026-04-28 14:33:10] 2026-04-28 12:32:04,654 | INFO     | update_server=False
[2026-04-28 14:33:10] 2026-04-28 12:32:04,655 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-28 14:33:10] 2026-04-28 12:32:04,837 | INFO     | all job control threads have been joined
[2026-04-28 14:33:10] 2026-04-28 12:32:05,097 | INFO     | all data control threads have been joined
[2026-04-28 14:33:10] 2026-04-28 12:32:05,154 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-28 14:33:10] 2026-04-28 12:32:05,154 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-28 14:33:10] 2026-04-28 12:32:05,154 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-28 14:33:10] 2026-04-28 12:32:05,154 | INFO     | will abort loop
[2026-04-28 14:33:10] 2026-04-28 12:32:05,593 | INFO     | all payload control threads have been joined
[2026-04-28 14:33:10] 2026-04-28 12:32:05,660 | INFO     | [job] retrieve thread has finished
[2026-04-28 14:33:10] 2026-04-28 12:32:05,720 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-28 14:33:10] 2026-04-28 12:32:05,765 | INFO     | [payload] validate_pre thread has finished
[2026-04-28 14:33:10] 2026-04-28 12:32:05,842 | INFO     | [job] control thread has finished
[2026-04-28 14:33:10] 2026-04-28 12:32:05,882 | INFO     | [payload] failed_post thread has finished
[2026-04-28 14:33:10] 2026-04-28 12:32:05,934 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-28 14:33:10] 2026-04-28 12:32:06,102 | INFO     | [data] control thread has finished
[2026-04-28 14:33:10] 2026-04-28 12:32:06,139 | INFO     | [data] copytool_in thread has finished
[2026-04-28 14:33:10] 2026-04-28 12:32:06,159 | INFO     | [job] job monitor thread has finished
[2026-04-28 14:33:10] 2026-04-28 12:32:06,412 | INFO     | [job] create_data_payload thread has finished
[2026-04-28 14:33:10] 2026-04-28 12:32:06,447 | INFO     | [payload] execute_payloads thread has finished
[2026-04-28 14:33:10] 2026-04-28 12:32:06,598 | INFO     | [payload] control thread has finished
[2026-04-28 14:33:10] 2026-04-28 12:32:06,702 | INFO     | [job] validate thread has finished
[2026-04-28 14:33:10] 2026-04-28 12:32:06,794 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-28 14:33:10] 2026-04-28 12:32:07,245 | INFO     | [payload] validate_post thread has finished
[2026-04-28 14:33:10] 2026-04-28 12:32:07,558 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-28 14:33:10] 2026-04-28 12:32:07,725 | INFO     | [data] copytool_out thread has finished
[2026-04-28 14:33:10] 2026-04-28 12:32:07,799 | INFO     | [job] queue monitor thread has finished
[2026-04-28 14:33:10] 2026-04-28 12:32:11,564 | INFO     | [data] queue_monitor thread has finished
[2026-04-28 14:33:10] 2026-04-28 12:32:34,763 | INFO     | PID=3556234 has CPU usage=11.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-28 14:33:10] 2026-04-28 12:32:34,763 | INFO     | .. there are 24 such processes running
[2026-04-28 14:33:10] 2026-04-28 12:32:34,765 | INFO     | found 0 job(s) in 20 queues
[2026-04-28 14:33:10] 2026-04-28 12:32:34,765 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-28 14:33:10] 2026-04-28 12:32:34,765 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-28 14:33:10] 2026-04-28 12:33:04,432 | INFO     | [monitor] cgroup control has ended
[2026-04-28 14:33:10] 2026-04-28 12:33:05,437 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23262531622720)>', '<ExcThread(monitor, started 23262286575360)>']
[2026-04-28 14:33:10] 2026-04-28 12:33:05,921 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-28 14:33:10] 2026-04-28 12:33:05,921 | INFO     | [monitor] control thread has ended
[2026-04-28 14:33:10] 2026-04-28 12:33:10,462 | INFO     | all workflow threads have been joined
[2026-04-28 14:33:10] 2026-04-28 12:33:10,462 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-28 14:33:10] 2026-04-28 12:33:10,462 | INFO     | traces error code: 0
[2026-04-28 14:33:10] 2026-04-28 12:33:10,463 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-28 14:33:10] 2026-04-28 12:33:10,608 [wrapper] ==== pilot stdout END ====
[2026-04-28 14:33:10] 2026-04-28 12:33:10,612 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-28 14:33:10] 2026-04-28 12:33:10,620 [wrapper] pilotpid: 3556234
[2026-04-28 14:33:10] 2026-04-28 12:33:10,624 [wrapper] Pilot exit status: 0
[2026-04-28 14:33:10] 2026-04-28 12:33:10,638 [wrapper] pandaids: 7116129847
[2026-04-28 14:33:10] 2026-04-28 12:33:10,854 [wrapper] cleanup supervisor_pilot 3916013 3556235
[2026-04-28 14:33:10] 2026-04-28 12:33:10,857 [wrapper] Test setup, not cleaning
[2026-04-28 14:33:10] 2026-04-28 12:33:10,860 [wrapper] apfmon messages muted
[2026-04-28 14:33:10] 2026-04-28 12:33:10,865 [wrapper] ==== wrapper stdout END ====
[2026-04-28 14:33:10] 2026-04-28 12:33:10,868 [wrapper] ==== wrapper stderr END ====
[2026-04-28 14:33:10]  *** Error codes and diagnostics ***
[2026-04-28 14:33:10]     "exeErrorCode": 0,
[2026-04-28 14:33:10]     "pilotErrorCode": 0,
[2026-04-28 14:33:10]  *** Listing of results directory ***
[2026-04-28 14:33:10] total 461872
[2026-04-28 14:33:10] -rw-r--r--. 1 boinc boinc    683926 Apr 26 18:08 pilot3.tar.gz
[2026-04-28 14:33:10] -rwx------. 1 boinc boinc     36322 Apr 26 18:55 runpilot2-wrapper.sh
[2026-04-28 14:33:10] -rw-r--r--. 1 boinc boinc      5631 Apr 26 18:56 queuedata.json
[2026-04-28 14:33:10] -rw-r--r--. 1 boinc boinc       100 Apr 28 11:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-28 14:33:10] -rwxr-xr-x. 1 boinc boinc      7986 Apr 28 11:37 run_atlas
[2026-04-28 14:33:10] -rw-r--r--. 1 boinc boinc       105 Apr 28 11:37 job.xml
[2026-04-28 14:33:10] -rw-r--r--. 1 boinc boinc      6540 Apr 28 11:37 init_data.xml
[2026-04-28 14:33:10] -rw-r--r--. 2 boinc boinc 275164868 Apr 28 11:37 EVNT.49912796._000031.pool.root.1
[2026-04-28 14:33:10] -rw-r--r--. 2 boinc boinc     15667 Apr 28 11:37 start_atlas.sh
[2026-04-28 14:33:10] drwxrwx--x. 2 boinc boinc      4096 Apr 28 11:37 shared
[2026-04-28 14:33:10] -rw-r--r--. 2 boinc boinc    697441 Apr 28 11:37 input.tar.gz
[2026-04-28 14:33:10] -rw-r--r--. 1 boinc boinc         0 Apr 28 11:37 boinc_lockfile
[2026-04-28 14:33:10] -rw-r--r--. 1 boinc boinc      2678 Apr 28 11:37 pandaJob.out
[2026-04-28 14:33:10] -rw-------. 1 boinc boinc    992901 Apr 28 11:37 agis_schedconf.cvmfs.json
[2026-04-28 14:33:10] -rw-------. 1 boinc boinc   1512704 Apr 28 11:37 agis_ddmendpoints.agis.ALL.json
[2026-04-28 14:33:10] -rw-------. 1 boinc boinc       439 Apr 28 11:37 workernode_map.json
[2026-04-28 14:33:10] drwx------. 5 boinc boinc      4096 Apr 28 11:37 pilot3
[2026-04-28 14:33:10] -rw-------. 1 boinc boinc 191125124 Apr 28 14:31 HITS.49912801._000758.pool.root.1
[2026-04-28 14:33:10] -rw-r--r--. 1 boinc boinc       487 Apr 28 14:31 boinc_task_state.xml
[2026-04-28 14:33:10] -rw-------. 1 boinc boinc      1029 Apr 28 14:31 memory_monitor_summary.json
[2026-04-28 14:33:10] -rw-------. 1 boinc boinc    295405 Apr 28 14:31 log.49912801._000758.job.log.tgz.1
[2026-04-28 14:33:10] -rw-------. 1 boinc boinc      6359 Apr 28 14:32 heartbeat_new.json
[2026-04-28 14:33:10] -rw-------. 1 boinc boinc      6250 Apr 28 14:32 heartbeat.json
[2026-04-28 14:33:10] -rw-------. 1 boinc boinc        95 Apr 28 14:32 pilot_heartbeat.json
[2026-04-28 14:33:10] -rw-r--r--. 1 boinc boinc      8192 Apr 28 14:32 boinc_mmap_file
[2026-04-28 14:33:10] -rw-r--r--. 1 boinc boinc        27 Apr 28 14:32 wrapper_checkpoint.txt
[2026-04-28 14:33:10] -rw-------. 1 boinc boinc      5019 Apr 28 14:33 pilotlog.txt
[2026-04-28 14:33:10] -rw-------. 1 boinc boinc    972225 Apr 28 14:33 log.49912801._000758.job.log.1
[2026-04-28 14:33:10] -rw-------. 1 boinc boinc       357 Apr 28 14:33 output.list
[2026-04-28 14:33:10] -rw-r--r--. 1 boinc boinc       410 Apr 28 14:33 runtime_log
[2026-04-28 14:33:10] -rw-------. 1 boinc boinc   1280000 Apr 28 14:33 result.tar.gz
[2026-04-28 14:33:10] -rw-r--r--. 1 boinc boinc      8828 Apr 28 14:33 runtime_log.err
[2026-04-28 14:33:10] -rw-------. 1 boinc boinc       665 Apr 28 14:33 437c95bebf4d.diag
[2026-04-28 14:33:10] -rw-r--r--. 1 boinc boinc     21057 Apr 28 14:33 stderr.txt
[2026-04-28 14:33:10] HITS file was successfully produced:
[2026-04-28 14:33:10] -rw-------. 1 boinc boinc 191125124 Apr 28 14:31 shared/HITS.pool.root.1
[2026-04-28 14:33:10]  *** Contents of shared directory: ***
[2026-04-28 14:33:11] total 457324
[2026-04-28 14:33:11] -rw-r--r--. 2 boinc boinc 275164868 Apr 28 11:37 ATLAS.root_0
[2026-04-28 14:33:11] -rw-r--r--. 2 boinc boinc     15667 Apr 28 11:37 start_atlas.sh
[2026-04-28 14:33:11] -rw-r--r--. 2 boinc boinc    697441 Apr 28 11:37 input.tar.gz
[2026-04-28 14:33:11] -rw-------. 1 boinc boinc 191125124 Apr 28 14:31 HITS.pool.root.1
[2026-04-28 14:33:11] -rw-------. 1 boinc boinc   1280000 Apr 28 14:33 result.tar.gz
14:33:12 (3551983): run_atlas exited; CPU time 39939.205199
14:33:12 (3551983): called boinc_finish(0)

</stderr_txt>
]]>

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