Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:49:12 (610962): wrapper (7.7.26015): starting
01:49:12 (610962): wrapper: running run_atlas (--nthreads 4)
[2026-04-27 01:49:12] Arguments: --nthreads 4
[2026-04-27 01:49:12] Threads: 4
[2026-04-27 01:49:12] Checking for CVMFS
[2026-04-27 01:49:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-27 01:49:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-27 01:49:13] Running cvmfs_config stat atlas.cern.ch
[2026-04-27 01:49:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-27 01:49:13] 2.9.2.0 520919 479 66544 158907 1 50 34805053 36864001 0 130560 0 329306 99.987 18705 16350 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-27 01:49:13] CVMFS is ok
[2026-04-27 01:49:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-27 01:49:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-27 01:49:13] Further information can be found at the LHC@home message board.
[2026-04-27 01:49:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-27 01:49:13] Checking for apptainer binary...
[2026-04-27 01:49:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-27 01:49:13] Running /usr/bin/apptainer --version
[2026-04-27 01:49:13] apptainer version 1.4.1-1.1
[2026-04-27 01:49:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-27 01:49:13] thA309
[2026-04-27 01:49:13] apptainer works
[2026-04-27 01:49:13] Set ATHENA_PROC_NUMBER=4
[2026-04-27 01:49:13] Set ATHENA_CORE_NUMBER=4
[2026-04-27 01:49:13] Starting ATLAS job with PandaID=7116161461
[2026-04-27 01:49:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-27 03:24:39]  *** The last 200 lines of the pilot log: ***
[2026-04-27 03:24:39] 2026-04-27 01:24:06,127 | INFO     | will attempt to kill all subprocesses of pid=619577
[2026-04-27 03:24:39] 2026-04-27 01:24:06,168 | INFO     | process IDs to be killed: [619577] (in reverse order)
[2026-04-27 03:24:39] 2026-04-27 01:24:06,204 | WARNING  | found no corresponding commands to process id(s)
[2026-04-27 03:24:39] 2026-04-27 01:24:06,205 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-27 03:24:39] 2026-04-27 01:24:06,207 | INFO     | did not find any defunct processes belonging to 619577
[2026-04-27 03:24:39] 2026-04-27 01:24:06,208 | INFO     | did not find any defunct processes belonging to 619577
[2026-04-27 03:24:39] 2026-04-27 01:24:06,208 | INFO     | Ready for new job
[2026-04-27 03:24:39] 2026-04-27 01:24:06,209 | INFO     | ***************************************
[2026-04-27 03:24:39] 2026-04-27 01:24:06,209 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-27 03:24:39] 2026-04-27 01:24:06,209 | INFO     | ***************************************
[2026-04-27 03:24:39] 2026-04-27 01:24:06,209 | INFO     | 
[2026-04-27 03:24:39] 2026-04-27 01:24:06,209 | INFO     | architecture information:
[2026-04-27 03:24:39] 2026-04-27 01:24:06,210 | INFO     | executing command: cat /etc/os-release
[2026-04-27 03:24:39] 2026-04-27 01:24:06,225 | INFO     | cat /etc/os-release:
[2026-04-27 03:24:39] NAME="CentOS Linux"
[2026-04-27 03:24:39] VERSION="7 (Core)"
[2026-04-27 03:24:39] ID="centos"
[2026-04-27 03:24:39] ID_LIKE="rhel fedora"
[2026-04-27 03:24:39] VERSION_ID="7"
[2026-04-27 03:24:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-27 03:24:39] ANSI_COLOR="0;31"
[2026-04-27 03:24:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-27 03:24:39] HOME_URL="https://www.centos.org/"
[2026-04-27 03:24:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-27 03:24:39] 
[2026-04-27 03:24:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-27 03:24:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-27 03:24:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-27 03:24:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-27 03:24:39] 
[2026-04-27 03:24:39] 2026-04-27 01:24:06,225 | INFO     | ***************************************
[2026-04-27 03:24:39] 2026-04-27 01:24:06,728 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-27 03:24:39] 2026-04-27 01:24:06,747 | INFO     | sufficient remaining disk space (216917868544 B)
[2026-04-27 03:24:39] 2026-04-27 01:24:06,748 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-27 03:24:39] 2026-04-27 01:24:06,748 | INFO     | current server update state: UPDATING_FINAL
[2026-04-27 03:24:39] 2026-04-27 01:24:06,748 | INFO     | update_server=False
[2026-04-27 03:24:39] 2026-04-27 01:24:06,748 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-27 03:24:39] 2026-04-27 01:24:06,748 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-27 03:24:39] 2026-04-27 01:24:06,748 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-27 03:24:39] 2026-04-27 01:24:06,748 | INFO     | aborting loop
[2026-04-27 03:24:39] 2026-04-27 01:24:06,878 | INFO     | all payload control threads have been joined
[2026-04-27 03:24:39] 2026-04-27 01:24:07,370 | INFO     | all data control threads have been joined
[2026-04-27 03:24:39] 2026-04-27 01:24:07,592 | INFO     | all job control threads have been joined
[2026-04-27 03:24:39] 2026-04-27 01:24:07,753 | INFO     | [job] retrieve thread has finished
[2026-04-27 03:24:39] 2026-04-27 01:24:07,754 | INFO     | [job] queue monitor thread has finished
[2026-04-27 03:24:39] 2026-04-27 01:24:07,754 | INFO     | [job] job monitor thread has finished
[2026-04-27 03:24:39] 2026-04-27 01:24:07,861 | INFO     | [payload] failed_post thread has finished
[2026-04-27 03:24:39] 2026-04-27 01:24:07,883 | INFO     | [payload] control thread has finished
[2026-04-27 03:24:39] 2026-04-27 01:24:07,888 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-27 03:24:39] 2026-04-27 01:24:08,367 | INFO     | [job] validate thread has finished
[2026-04-27 03:24:39] 2026-04-27 01:24:08,375 | INFO     | [data] control thread has finished
[2026-04-27 03:24:39] 2026-04-27 01:24:08,451 | INFO     | [payload] validate_post thread has finished
[2026-04-27 03:24:39] 2026-04-27 01:24:08,489 | INFO     | [job] create_data_payload thread has finished
[2026-04-27 03:24:39] 2026-04-27 01:24:08,565 | INFO     | [payload] validate_pre thread has finished
[2026-04-27 03:24:39] 2026-04-27 01:24:08,598 | INFO     | [job] control thread has finished
[2026-04-27 03:24:39] 2026-04-27 01:24:08,743 | INFO     | [data] copytool_in thread has finished
[2026-04-27 03:24:39] 2026-04-27 01:24:08,757 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-27 03:24:39] 2026-04-27 01:24:09,040 | INFO     | [payload] execute_payloads thread has finished
[2026-04-27 03:24:39] 2026-04-27 01:24:09,051 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-27 03:24:39] 2026-04-27 01:24:09,894 | INFO     | [data] copytool_out thread has finished
[2026-04-27 03:24:39] 2026-04-27 01:24:13,058 | INFO     | [data] queue_monitor thread has finished
[2026-04-27 03:24:39] 2026-04-27 01:24:33,121 | INFO     | [monitor] cgroup control has ended
[2026-04-27 03:24:39] 2026-04-27 01:24:34,166 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139878747023168)>', '<ExcThread(monitor, started 139877823805184)>']
[2026-04-27 03:24:39] 2026-04-27 01:24:36,985 | INFO     | PID=615077 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-27 03:24:39] 2026-04-27 01:24:36,986 | INFO     | found 0 job(s) in 20 queues
[2026-04-27 03:24:39] 2026-04-27 01:24:36,986 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-27 03:24:39] 2026-04-27 01:24:36,986 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-27 03:24:39] 2026-04-27 01:24:36,986 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-27 03:24:39] 2026-04-27 01:24:36,986 | INFO     | [monitor] control thread has ended
[2026-04-27 03:24:39] 2026-04-27 01:24:39,192 | INFO     | all workflow threads have been joined
[2026-04-27 03:24:39] 2026-04-27 01:24:39,192 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-27 03:24:39] 2026-04-27 01:24:39,193 | INFO     | traces error code: 0
[2026-04-27 03:24:39] 2026-04-27 01:24:39,193 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-27 03:24:39] 2026-04-27 01:24:39,273 [wrapper] ==== pilot stdout END ====
[2026-04-27 03:24:39] 2026-04-27 01:24:39,277 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-27 03:24:39] 2026-04-27 01:24:39,281 [wrapper] pilotpid: 615077
[2026-04-27 03:24:39] 2026-04-27 01:24:39,285 [wrapper] Pilot exit status: 0
[2026-04-27 03:24:39] 2026-04-27 01:24:39,297 [wrapper] pandaids: 7116161461
[2026-04-27 03:24:39] 2026-04-27 01:24:39,321 [wrapper] cleanup supervisor_pilot  625970 615078
[2026-04-27 03:24:39] 2026-04-27 01:24:39,325 [wrapper] Test setup, not cleaning
[2026-04-27 03:24:39] 2026-04-27 01:24:39,329 [wrapper] apfmon messages muted
[2026-04-27 03:24:39] 2026-04-27 01:24:39,333 [wrapper] ==== wrapper stdout END ====
[2026-04-27 03:24:39] 2026-04-27 01:24:39,337 [wrapper] ==== wrapper stderr END ====
[2026-04-27 03:24:39]  *** Error codes and diagnostics ***
[2026-04-27 03:24:39]     "exeErrorCode": 0,
[2026-04-27 03:24:39]     "pilotErrorCode": 0,
[2026-04-27 03:24:39]  *** Listing of results directory ***
[2026-04-27 03:24:39] total 466592
[2026-04-27 03:24:39] -rw-r--r-- 1 boinc boinc      5631 Apr 26 20:16 queuedata.json
[2026-04-27 03:24:39] -rw-r--r-- 1 boinc boinc    683926 Apr 26 20:16 pilot3.tar.gz
[2026-04-27 03:24:39] -rwx------ 1 boinc boinc     36322 Apr 26 20:17 runpilot2-wrapper.sh
[2026-04-27 03:24:39] -rw-r--r-- 1 boinc boinc       100 Apr 27 01:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-27 03:24:39] -rwxr-xr-x 1 boinc boinc      7986 Apr 27 01:49 run_atlas
[2026-04-27 03:24:39] -rw-r--r-- 1 boinc boinc       105 Apr 27 01:49 job.xml
[2026-04-27 03:24:39] -rw-r--r-- 2 boinc boinc 262468631 Apr 27 01:49 EVNT.49863730._000034.pool.root.1
[2026-04-27 03:24:39] -rw-r--r-- 2 boinc boinc    697410 Apr 27 01:49 input.tar.gz
[2026-04-27 03:24:39] -rw-r--r-- 2 boinc boinc     15667 Apr 27 01:49 start_atlas.sh
[2026-04-27 03:24:39] drwxrwx--x 2 boinc boinc      4096 Apr 27 01:49 shared
[2026-04-27 03:24:39] -rw-r--r-- 1 boinc boinc         0 Apr 27 01:49 boinc_setup_complete
[2026-04-27 03:24:39] -rw-r--r-- 1 boinc boinc      6292 Apr 27 01:49 init_data.xml
[2026-04-27 03:24:39] -rw-r--r-- 1 boinc boinc         0 Apr 27 01:49 boinc_lockfile
[2026-04-27 03:24:39] -rw-r--r-- 1 boinc boinc      2572 Apr 27 01:49 pandaJob.out
[2026-04-27 03:24:39] -rw------- 1 boinc boinc    997530 Apr 27 01:49 agis_schedconf.cvmfs.json
[2026-04-27 03:24:39] -rw------- 1 boinc boinc   1509089 Apr 27 01:49 agis_ddmendpoints.agis.ALL.json
[2026-04-27 03:24:39] -rw------- 1 boinc boinc       427 Apr 27 01:49 workernode_map.json
[2026-04-27 03:24:39] drwx------ 5 boinc boinc      4096 Apr 27 01:49 pilot3
[2026-04-27 03:24:39] -rw------- 1 boinc boinc 209565117 Apr 27 03:23 HITS.49863733._000799.pool.root.1
[2026-04-27 03:24:39] -rw-r--r-- 1 boinc boinc       487 Apr 27 03:23 boinc_task_state.xml
[2026-04-27 03:24:39] -rw------- 1 boinc boinc        95 Apr 27 03:23 pilot_heartbeat.json
[2026-04-27 03:24:39] -rw------- 1 boinc boinc      1025 Apr 27 03:23 memory_monitor_summary.json
[2026-04-27 03:24:39] -rw------- 1 boinc boinc    266950 Apr 27 03:24 log.49863733._000799.job.log.tgz.1
[2026-04-27 03:24:39] -rw------- 1 boinc boinc      6333 Apr 27 03:24 heartbeat_new.json
[2026-04-27 03:24:39] -rw------- 1 boinc boinc      6224 Apr 27 03:24 heartbeat.json
[2026-04-27 03:24:39] -rw-r--r-- 1 boinc boinc      8192 Apr 27 03:24 boinc_mmap_file
[2026-04-27 03:24:39] -rw-r--r-- 1 boinc boinc        27 Apr 27 03:24 wrapper_checkpoint.txt
[2026-04-27 03:24:39] -rw------- 1 boinc boinc      4750 Apr 27 03:24 pilotlog.txt
[2026-04-27 03:24:39] -rw------- 1 boinc boinc    549172 Apr 27 03:24 log.49863733._000799.job.log.1
[2026-04-27 03:24:39] -rw------- 1 boinc boinc       357 Apr 27 03:24 output.list
[2026-04-27 03:24:39] -rw-r--r-- 1 boinc boinc       410 Apr 27 03:24 runtime_log
[2026-04-27 03:24:39] -rw------- 1 boinc boinc    829440 Apr 27 03:24 result.tar.gz
[2026-04-27 03:24:39] -rw-r--r-- 1 boinc boinc      8519 Apr 27 03:24 runtime_log.err
[2026-04-27 03:24:39] -rw------- 1 boinc boinc       657 Apr 27 03:24 569d68a2f730.diag
[2026-04-27 03:24:39] -rw-r--r-- 1 boinc boinc      9968 Apr 27 03:24 stderr.txt
[2026-04-27 03:24:39] HITS file was successfully produced:
[2026-04-27 03:24:39] -rw------- 1 boinc boinc 209565117 Apr 27 03:23 shared/HITS.pool.root.1
[2026-04-27 03:24:39]  *** Contents of shared directory: ***
[2026-04-27 03:24:39] total 462496
[2026-04-27 03:24:39] -rw-r--r-- 2 boinc boinc 262468631 Apr 27 01:49 ATLAS.root_0
[2026-04-27 03:24:39] -rw-r--r-- 2 boinc boinc    697410 Apr 27 01:49 input.tar.gz
[2026-04-27 03:24:39] -rw-r--r-- 2 boinc boinc     15667 Apr 27 01:49 start_atlas.sh
[2026-04-27 03:24:39] -rw------- 1 boinc boinc 209565117 Apr 27 03:23 HITS.pool.root.1
[2026-04-27 03:24:39] -rw------- 1 boinc boinc    829440 Apr 27 03:24 result.tar.gz
03:24:41 (610962): run_atlas exited; CPU time 20674.268364
03:24:41 (610962): called boinc_finish(0)

</stderr_txt>
]]>

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