Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:24:44 (626272): wrapper (7.7.26015): starting
03:24:44 (626272): wrapper: running run_atlas (--nthreads 4)
[2026-04-27 03:24:44] Arguments: --nthreads 4
[2026-04-27 03:24:44] Threads: 4
[2026-04-27 03:24:44] Checking for CVMFS
[2026-04-27 03:24:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-27 03:24:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-27 03:24:45] Running cvmfs_config stat atlas.cern.ch
[2026-04-27 03:24:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-27 03:24:45] 2.9.2.0 520919 575 67108 158909 2 50 34813880 36864000 0 130560 0 384466 99.988 21353 15620 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-27 03:24:45] CVMFS is ok
[2026-04-27 03:24:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-27 03:24:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-27 03:24:45] Further information can be found at the LHC@home message board.
[2026-04-27 03:24:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-27 03:24:45] Checking for apptainer binary...
[2026-04-27 03:24:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-27 03:24:45] Running /usr/bin/apptainer --version
[2026-04-27 03:24:45] apptainer version 1.4.1-1.1
[2026-04-27 03:24:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-27 03:24:45] thA309
[2026-04-27 03:24:45] apptainer works
[2026-04-27 03:24:45] Set ATHENA_PROC_NUMBER=4
[2026-04-27 03:24:45] Set ATHENA_CORE_NUMBER=4
[2026-04-27 03:24:45] Starting ATLAS job with PandaID=7116160290
[2026-04-27 03:24:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-27 05:00:12]  *** The last 200 lines of the pilot log: ***
[2026-04-27 05:00:12] 2026-04-27 02:59:24,922 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-27 05:00:12] 2026-04-27 02:59:24,922 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-27 05:00:12] 2026-04-27 02:59:24,922 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-27 05:00:12] 2026-04-27 02:59:24,922 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-27 05:00:12] 2026-04-27 02:59:24,922 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-27 05:00:12] 2026-04-27 02:59:24,922 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-27 05:00:12] 2026-04-27 02:59:24,922 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-27 05:00:12] 2026-04-27 02:59:24,922 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-27 05:00:12] 2026-04-27 02:59:24,922 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-27 05:00:12] 2026-04-27 02:59:24,922 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-27 05:00:12] 2026-04-27 02:59:24,923 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-27 05:00:12] 2026-04-27 02:59:24,923 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-27 05:00:12] 2026-04-27 02:59:24,923 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-27 05:00:12] 2026-04-27 02:59:24,923 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-27 05:00:12] 2026-04-27 02:59:24,923 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-27 05:00:12] 2026-04-27 02:59:24,923 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-27 05:00:12] 2026-04-27 02:59:24,923 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-27 05:00:12] 2026-04-27 02:59:24,923 | INFO     | job 7116160290 has completed (purged errors)
[2026-04-27 05:00:12] 2026-04-27 02:59:24,923 | INFO     | overall cleanup function is called
[2026-04-27 05:00:12] 2026-04-27 02:59:25,930 | INFO     | --- collectZombieJob: --- 10, [634910]
[2026-04-27 05:00:12] 2026-04-27 02:59:25,930 | INFO     | zombie collector waiting for pid 634910
[2026-04-27 05:00:12] 2026-04-27 02:59:25,930 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-27 05:00:12] 2026-04-27 02:59:25,930 | INFO     | collected zombie processes
[2026-04-27 05:00:12] 2026-04-27 02:59:25,930 | INFO     | will attempt to kill all subprocesses of pid=634910
[2026-04-27 05:00:12] 2026-04-27 02:59:25,971 | INFO     | process IDs to be killed: [634910] (in reverse order)
[2026-04-27 05:00:12] 2026-04-27 02:59:26,007 | WARNING  | found no corresponding commands to process id(s)
[2026-04-27 05:00:12] 2026-04-27 02:59:26,007 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-27 05:00:12] 2026-04-27 02:59:26,009 | INFO     | did not find any defunct processes belonging to 634910
[2026-04-27 05:00:12] 2026-04-27 02:59:26,011 | INFO     | did not find any defunct processes belonging to 634910
[2026-04-27 05:00:12] 2026-04-27 02:59:26,011 | INFO     | Ready for new job
[2026-04-27 05:00:12] 2026-04-27 02:59:26,011 | INFO     | ***************************************
[2026-04-27 05:00:12] 2026-04-27 02:59:26,011 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-27 05:00:12] 2026-04-27 02:59:26,011 | INFO     | ***************************************
[2026-04-27 05:00:12] 2026-04-27 02:59:26,011 | INFO     | 
[2026-04-27 05:00:12] 2026-04-27 02:59:26,012 | INFO     | architecture information:
[2026-04-27 05:00:12] 2026-04-27 02:59:26,012 | INFO     | executing command: cat /etc/os-release
[2026-04-27 05:00:12] 2026-04-27 02:59:26,027 | INFO     | cat /etc/os-release:
[2026-04-27 05:00:12] NAME="CentOS Linux"
[2026-04-27 05:00:12] VERSION="7 (Core)"
[2026-04-27 05:00:12] ID="centos"
[2026-04-27 05:00:12] ID_LIKE="rhel fedora"
[2026-04-27 05:00:12] VERSION_ID="7"
[2026-04-27 05:00:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-27 05:00:12] ANSI_COLOR="0;31"
[2026-04-27 05:00:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-27 05:00:12] HOME_URL="https://www.centos.org/"
[2026-04-27 05:00:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-27 05:00:12] 
[2026-04-27 05:00:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-27 05:00:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-27 05:00:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-27 05:00:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-27 05:00:12] 
[2026-04-27 05:00:12] 2026-04-27 02:59:26,027 | INFO     | ***************************************
[2026-04-27 05:00:12] 2026-04-27 02:59:26,530 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-27 05:00:12] 2026-04-27 02:59:26,548 | INFO     | sufficient remaining disk space (214950739968 B)
[2026-04-27 05:00:12] 2026-04-27 02:59:26,548 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-27 05:00:12] 2026-04-27 02:59:26,549 | INFO     | current server update state: UPDATING_FINAL
[2026-04-27 05:00:12] 2026-04-27 02:59:26,549 | INFO     | update_server=False
[2026-04-27 05:00:12] 2026-04-27 02:59:26,549 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-27 05:00:12] 2026-04-27 02:59:26,549 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-27 05:00:12] 2026-04-27 02:59:26,549 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-27 05:00:12] 2026-04-27 02:59:26,549 | INFO     | aborting loop
[2026-04-27 05:00:12] 2026-04-27 02:59:26,820 | INFO     | all payload control threads have been joined
[2026-04-27 05:00:12] 2026-04-27 02:59:27,260 | INFO     | all data control threads have been joined
[2026-04-27 05:00:12] 2026-04-27 02:59:27,554 | INFO     | [job] retrieve thread has finished
[2026-04-27 05:00:12] 2026-04-27 02:59:27,555 | INFO     | [job] queue monitor thread has finished
[2026-04-27 05:00:12] 2026-04-27 02:59:27,555 | INFO     | [job] job monitor thread has finished
[2026-04-27 05:00:12] 2026-04-27 02:59:27,590 | INFO     | all job control threads have been joined
[2026-04-27 05:00:12] 2026-04-27 02:59:27,609 | INFO     | [payload] validate_post thread has finished
[2026-04-27 05:00:12] 2026-04-27 02:59:27,704 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-27 05:00:12] 2026-04-27 02:59:27,826 | INFO     | [payload] control thread has finished
[2026-04-27 05:00:12] 2026-04-27 02:59:28,239 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-27 05:00:12] 2026-04-27 02:59:28,266 | INFO     | [data] control thread has finished
[2026-04-27 05:00:12] 2026-04-27 02:59:28,361 | INFO     | [payload] execute_payloads thread has finished
[2026-04-27 05:00:12] 2026-04-27 02:59:28,383 | INFO     | [job] validate thread has finished
[2026-04-27 05:00:12] 2026-04-27 02:59:28,476 | INFO     | [job] create_data_payload thread has finished
[2026-04-27 05:00:12] 2026-04-27 02:59:28,531 | INFO     | [payload] validate_pre thread has finished
[2026-04-27 05:00:12] 2026-04-27 02:59:28,595 | INFO     | [job] control thread has finished
[2026-04-27 05:00:12] 2026-04-27 02:59:28,673 | INFO     | [payload] failed_post thread has finished
[2026-04-27 05:00:12] 2026-04-27 02:59:28,715 | INFO     | [data] copytool_in thread has finished
[2026-04-27 05:00:12] 2026-04-27 02:59:29,708 | INFO     | [data] copytool_out thread has finished
[2026-04-27 05:00:12] 2026-04-27 02:59:32,246 | INFO     | [data] queue_monitor thread has finished
[2026-04-27 05:00:12] 2026-04-27 02:59:36,722 | INFO     | job.realtimelogging is not enabled
[2026-04-27 05:00:12] 2026-04-27 02:59:37,727 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-27 05:00:12] 2026-04-27 02:59:56,892 | INFO     | PID=630386 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-27 05:00:12] 2026-04-27 02:59:56,892 | INFO     | found 0 job(s) in 20 queues
[2026-04-27 05:00:12] 2026-04-27 02:59:56,892 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-27 05:00:12] 2026-04-27 02:59:56,892 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-27 05:00:12] 2026-04-27 03:00:05,253 | INFO     | [monitor] cgroup control has ended
[2026-04-27 05:00:12] 2026-04-27 03:00:06,967 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140078135498560)>', '<ExcThread(monitor, started 140077120345856)>']
[2026-04-27 05:00:12] 2026-04-27 03:00:07,950 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-27 05:00:12] 2026-04-27 03:00:07,951 | INFO     | [monitor] control thread has ended
[2026-04-27 05:00:12] 2026-04-27 03:00:11,993 | INFO     | all workflow threads have been joined
[2026-04-27 05:00:12] 2026-04-27 03:00:11,993 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-27 05:00:12] 2026-04-27 03:00:11,994 | INFO     | traces error code: 0
[2026-04-27 05:00:12] 2026-04-27 03:00:11,994 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-27 05:00:12] 2026-04-27 03:00:12,075 [wrapper] ==== pilot stdout END ====
[2026-04-27 05:00:12] 2026-04-27 03:00:12,079 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-27 05:00:12] 2026-04-27 03:00:12,084 [wrapper] pilotpid: 630386
[2026-04-27 05:00:12] 2026-04-27 03:00:12,088 [wrapper] Pilot exit status: 0
[2026-04-27 05:00:12] 2026-04-27 03:00:12,101 [wrapper] pandaids: 7116160290
[2026-04-27 05:00:12] 2026-04-27 03:00:12,125 [wrapper] cleanup supervisor_pilot  641064 630387
[2026-04-27 05:00:12] 2026-04-27 03:00:12,130 [wrapper] Test setup, not cleaning
[2026-04-27 05:00:12] 2026-04-27 03:00:12,134 [wrapper] apfmon messages muted
[2026-04-27 05:00:12] 2026-04-27 03:00:12,138 [wrapper] ==== wrapper stdout END ====
[2026-04-27 05:00:12] 2026-04-27 03:00:12,142 [wrapper] ==== wrapper stderr END ====
[2026-04-27 05:00:12]  *** Error codes and diagnostics ***
[2026-04-27 05:00:12]     "exeErrorCode": 0,
[2026-04-27 05:00:12]     "pilotErrorCode": 0,
[2026-04-27 05:00:12]  *** Listing of results directory ***
[2026-04-27 05:00:12] total 462952
[2026-04-27 05:00:12] -rw-r--r-- 1 boinc boinc      5631 Apr 26 20:16 queuedata.json
[2026-04-27 05:00:12] -rw-r--r-- 1 boinc boinc    683926 Apr 26 20:16 pilot3.tar.gz
[2026-04-27 05:00:12] -rwx------ 1 boinc boinc     36322 Apr 26 20:16 runpilot2-wrapper.sh
[2026-04-27 05:00:12] -rw-r--r-- 1 boinc boinc       100 Apr 27 03:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-27 05:00:12] -rwxr-xr-x 1 boinc boinc      7986 Apr 27 03:24 run_atlas
[2026-04-27 05:00:12] -rw-r--r-- 1 boinc boinc       105 Apr 27 03:24 job.xml
[2026-04-27 05:00:12] -rw-r--r-- 2 boinc boinc 263143962 Apr 27 03:24 EVNT.49863730._000018.pool.root.1
[2026-04-27 05:00:12] -rw-r--r-- 2 boinc boinc    697408 Apr 27 03:24 input.tar.gz
[2026-04-27 05:00:12] -rw-r--r-- 2 boinc boinc     15667 Apr 27 03:24 start_atlas.sh
[2026-04-27 05:00:12] drwxrwx--x 2 boinc boinc      4096 Apr 27 03:24 shared
[2026-04-27 05:00:12] -rw-r--r-- 1 boinc boinc         0 Apr 27 03:24 boinc_setup_complete
[2026-04-27 05:00:12] -rw-r--r-- 1 boinc boinc      6292 Apr 27 03:24 init_data.xml
[2026-04-27 05:00:12] -rw-r--r-- 1 boinc boinc         0 Apr 27 03:24 boinc_lockfile
[2026-04-27 05:00:12] -rw-r--r-- 1 boinc boinc      2572 Apr 27 03:24 pandaJob.out
[2026-04-27 05:00:12] -rw------- 1 boinc boinc    997530 Apr 27 03:24 agis_schedconf.cvmfs.json
[2026-04-27 05:00:12] -rw------- 1 boinc boinc   1509089 Apr 27 03:24 agis_ddmendpoints.agis.ALL.json
[2026-04-27 05:00:12] -rw------- 1 boinc boinc       426 Apr 27 03:24 workernode_map.json
[2026-04-27 05:00:12] drwx------ 5 boinc boinc      4096 Apr 27 03:24 pilot3
[2026-04-27 05:00:12] -rw------- 1 boinc boinc 205163468 Apr 27 04:59 HITS.49863733._000400.pool.root.1
[2026-04-27 05:00:12] -rw-r--r-- 1 boinc boinc       487 Apr 27 04:59 boinc_task_state.xml
[2026-04-27 05:00:12] -rw------- 1 boinc boinc      1025 Apr 27 04:59 memory_monitor_summary.json
[2026-04-27 05:00:12] -rw------- 1 boinc boinc    267658 Apr 27 04:59 log.49863733._000400.job.log.tgz.1
[2026-04-27 05:00:12] -rw------- 1 boinc boinc      6331 Apr 27 04:59 heartbeat_new.json
[2026-04-27 05:00:12] -rw------- 1 boinc boinc      6222 Apr 27 04:59 heartbeat.json
[2026-04-27 05:00:12] -rw-r--r-- 1 boinc boinc        27 Apr 27 04:59 wrapper_checkpoint.txt
[2026-04-27 05:00:12] -rw-r--r-- 1 boinc boinc      8192 Apr 27 04:59 boinc_mmap_file
[2026-04-27 05:00:12] -rw------- 1 boinc boinc        95 Apr 27 04:59 pilot_heartbeat.json
[2026-04-27 05:00:12] -rw------- 1 boinc boinc      4822 Apr 27 05:00 pilotlog.txt
[2026-04-27 05:00:12] -rw------- 1 boinc boinc    547339 Apr 27 05:00 log.49863733._000400.job.log.1
[2026-04-27 05:00:12] -rw------- 1 boinc boinc       357 Apr 27 05:00 output.list
[2026-04-27 05:00:12] -rw-r--r-- 1 boinc boinc       410 Apr 27 05:00 runtime_log
[2026-04-27 05:00:12] -rw------- 1 boinc boinc    829440 Apr 27 05:00 result.tar.gz
[2026-04-27 05:00:12] -rw-r--r-- 1 boinc boinc      8519 Apr 27 05:00 runtime_log.err
[2026-04-27 05:00:12] -rw------- 1 boinc boinc       657 Apr 27 05:00 56940ee011ec.diag
[2026-04-27 05:00:12] -rw-r--r-- 1 boinc boinc     12412 Apr 27 05:00 stderr.txt
[2026-04-27 05:00:12] HITS file was successfully produced:
[2026-04-27 05:00:12] -rw------- 1 boinc boinc 205163468 Apr 27 04:59 shared/HITS.pool.root.1
[2026-04-27 05:00:12]  *** Contents of shared directory: ***
[2026-04-27 05:00:12] total 458856
[2026-04-27 05:00:12] -rw-r--r-- 2 boinc boinc 263143962 Apr 27 03:24 ATLAS.root_0
[2026-04-27 05:00:12] -rw-r--r-- 2 boinc boinc    697408 Apr 27 03:24 input.tar.gz
[2026-04-27 05:00:12] -rw-r--r-- 2 boinc boinc     15667 Apr 27 03:24 start_atlas.sh
[2026-04-27 05:00:12] -rw------- 1 boinc boinc 205163468 Apr 27 04:59 HITS.pool.root.1
[2026-04-27 05:00:12] -rw------- 1 boinc boinc    829440 Apr 27 05:00 result.tar.gz
05:00:14 (626272): run_atlas exited; CPU time 20704.999649
05:00:14 (626272): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN