Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:29:19 (4138663): wrapper (7.7.26015): starting
02:29:19 (4138663): wrapper: running run_atlas (--nthreads 12)
[2026-04-27 02:29:19] Arguments: --nthreads 12
[2026-04-27 02:29:19] Threads: 12
[2026-04-27 02:29:19] Checking for CVMFS
[2026-04-27 02:29:19] No cvmfs_config command found, will try listing directly
[2026-04-27 02:29:19] CVMFS is ok
[2026-04-27 02:29:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-27 02:29:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-27 02:29:19] Further information can be found at the LHC@home message board.
[2026-04-27 02:29:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-27 02:29:19] Checking for apptainer binary...
[2026-04-27 02:29:19] which: no apptainer in ((null))
[2026-04-27 02:29:19] apptainer is not installed, using version from CVMFS
[2026-04-27 02:29:19] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-27 02:29:20] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot72/slots/22/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut19.grid.cesnet.cz
[2026-04-27 02:29:20] apptainer works
[2026-04-27 02:29:20] Set ATHENA_PROC_NUMBER=12
[2026-04-27 02:29:20] Set ATHENA_CORE_NUMBER=12
[2026-04-27 02:29:20] Starting ATLAS job with PandaID=7116161391
[2026-04-27 02:29:20] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot72/slots/22 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-27 03:06:40]  *** The last 200 lines of the pilot log: ***
[2026-04-27 03:06:40]  filetype=log
[2026-04-27 03:06:40]  guid=5c65bee9-0c17-4b57-83d5-645b2698e3e6
[2026-04-27 03:06:40]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-04-27 03:06:40]  is_altstaged=None
[2026-04-27 03:06:40]  is_tar=False
[2026-04-27 03:06:40]  lfn=log.49863733._000729.job.log.tgz.1
[2026-04-27 03:06:40]  mtime=0
[2026-04-27 03:06:40]  protocol_id=None
[2026-04-27 03:06:40]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-27 03:06:40]  replicas=None
[2026-04-27 03:06:40]  scope=mc23_13p6TeV
[2026-04-27 03:06:40]  status=None
[2026-04-27 03:06:40]  status_code=0
[2026-04-27 03:06:40]  storage_token=
[2026-04-27 03:06:40]  surl=/var/lib/boinc/var/slot72/slots/22/PanDA_Pilot-7116161391/log.49863733._000729.job.log.tgz.1
[2026-04-27 03:06:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3f/b7/log.49863733._000729.job.log.tgz.1
[2026-04-27 03:06:40]  workdir=None
[2026-04-27 03:06:40] ]
[2026-04-27 03:06:40] 2026-04-27 01:05:38,149 | INFO     | transferring file log.49863733._000729.job.log.tgz.1 from /var/lib/boinc/var/slot72/slots/22/PanDA_Pilot-7116161391/log.49863733._000729.job.log.tgz.1 to /var/lib/
[2026-04-27 03:06:40] 2026-04-27 01:05:38,149 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot72/slots/22/PanDA_Pilot-7116161391/log.49863733._000729.job.log.tgz.1 /var/lib/boinc/var/slot72/slots/22/
[2026-04-27 03:06:40] 2026-04-27 01:05:38,165 | INFO     | adding to output.list: log.49863733._000729.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3f/b7/log.49863733._000729.job.log.tg
[2026-04-27 03:06:40] 2026-04-27 01:05:38,166 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-27 03:06:40] 2026-04-27 01:05:38,166 | INFO     | summary of transferred files:
[2026-04-27 03:06:40] 2026-04-27 01:05:38,166 | INFO     |  -- lfn=log.49863733._000729.job.log.tgz.1, status_code=0, status=transferred
[2026-04-27 03:06:40] 2026-04-27 01:05:38,166 | INFO     | stage-out finished correctly
[2026-04-27 03:06:40] 2026-04-27 01:05:39,616 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-27 03:06:40] 2026-04-27 01:05:40,674 | INFO     | job 7116161391 has state=finished
[2026-04-27 03:06:40] 2026-04-27 01:05:40,674 | INFO     | preparing for final server update for job 7116161391 in state='finished'
[2026-04-27 03:06:40] 2026-04-27 01:05:40,675 | INFO     | reading metadata from: /var/lib/boinc/var/slot72/slots/22/PanDA_Pilot-7116161391/jobReport.json
[2026-04-27 03:06:40] 2026-04-27 01:05:40,676 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot72/slots/22/workernode_map.json
[2026-04-27 03:06:40] 2026-04-27 01:05:40,676 | INFO     | this job has now completed (state=finished)
[2026-04-27 03:06:40] 2026-04-27 01:05:40,677 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-27 03:06:40] 2026-04-27 01:05:40,677 | INFO     | log transfer has been attempted: DONE
[2026-04-27 03:06:40] 2026-04-27 01:05:40,677 | INFO     | job 7116161391 has finished - writing final server update
[2026-04-27 03:06:40] 2026-04-27 01:05:40,677 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1393901/.job.ad'
[2026-04-27 03:06:40] 2026-04-27 01:05:40,677 | INFO     | total number of processed events: 400 (read)
[2026-04-27 03:06:40] 2026-04-27 01:05:40,694 | INFO     | using path: /var/lib/boinc/var/slot72/slots/22/PanDA_Pilot-7116161391/memory_monitor_summary.json (trf name=prmon)
[2026-04-27 03:06:40] 2026-04-27 01:05:40,695 | INFO     | extracted standard info from prmon json
[2026-04-27 03:06:40] 2026-04-27 01:05:40,695 | INFO     | extracted standard memory fields from prmon json
[2026-04-27 03:06:40] 2026-04-27 01:05:40,695 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-27 03:06:40] 2026-04-27 01:05:40,695 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-27 03:06:40] 2026-04-27 01:05:40,696 | INFO     | fitting pss+swap vs Time
[2026-04-27 03:06:40] 2026-04-27 01:05:40,696 | INFO     | sum of square deviations: 7553630.0
[2026-04-27 03:06:40] 2026-04-27 01:05:40,696 | INFO     | sum of deviations: -21008582.999999985
[2026-04-27 03:06:40] 2026-04-27 01:05:40,696 | INFO     | mean x (centered): 0.0
[2026-04-27 03:06:40] 2026-04-27 01:05:40,696 | INFO     | mean y: 2759014.620689655
[2026-04-27 03:06:40] 2026-04-27 01:05:40,696 | INFO     | intersect: 2759014.620689655
[2026-04-27 03:06:40] 2026-04-27 01:05:40,696 | INFO     | chi2: 0.00018269544404720685
[2026-04-27 03:06:40] 2026-04-27 01:05:40,696 | INFO     | current memory leak: -2.78 B/s (using 29 data points, chi2=0.00)
[2026-04-27 03:06:40] 2026-04-27 01:05:40,696 | INFO     | could have reported an average CPU frequency of 3579 MHz (5 samples)
[2026-04-27 03:06:40] 2026-04-27 01:05:40,697 | INFO     | ..............................
[2026-04-27 03:06:40] 2026-04-27 01:05:40,697 | INFO     | . Timing measurements:
[2026-04-27 03:06:40] 2026-04-27 01:05:40,697 | INFO     | . get job = 0 s
[2026-04-27 03:06:40] 2026-04-27 01:05:40,697 | INFO     | . initial setup = 4 s
[2026-04-27 03:06:40] 2026-04-27 01:05:40,697 | INFO     | . payload setup = 6 s
[2026-04-27 03:06:40] 2026-04-27 01:05:40,697 | INFO     | . stage-in = 0 s
[2026-04-27 03:06:40] 2026-04-27 01:05:40,697 | INFO     | . payload execution = 2145 s
[2026-04-27 03:06:40] 2026-04-27 01:05:40,697 | INFO     | . stage-out = 0 s
[2026-04-27 03:06:40] 2026-04-27 01:05:40,697 | INFO     | . log creation = 0 s
[2026-04-27 03:06:40] 2026-04-27 01:05:40,697 | INFO     | ..............................
[2026-04-27 03:06:40] 2026-04-27 01:05:40,744 | INFO     | 
[2026-04-27 03:06:40] 2026-04-27 01:05:40,745 | INFO     | job summary report
[2026-04-27 03:06:40] 2026-04-27 01:05:40,745 | INFO     | --------------------------------------------------
[2026-04-27 03:06:40] 2026-04-27 01:05:40,745 | INFO     | PanDA job id: 7116161391
[2026-04-27 03:06:40] 2026-04-27 01:05:40,745 | INFO     | task id: 49863733
[2026-04-27 03:06:40] 2026-04-27 01:05:40,745 | INFO     | errors: (none)
[2026-04-27 03:06:40] 2026-04-27 01:05:40,745 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-27 03:06:40] 2026-04-27 01:05:40,745 | INFO     | pilot state: finished 
[2026-04-27 03:06:40] 2026-04-27 01:05:40,745 | INFO     | transexitcode: 0
[2026-04-27 03:06:40] 2026-04-27 01:05:40,745 | INFO     | exeerrorcode: 0
[2026-04-27 03:06:40] 2026-04-27 01:05:40,745 | INFO     | exeerrordiag: 
[2026-04-27 03:06:40] 2026-04-27 01:05:40,745 | INFO     | exitcode: 0
[2026-04-27 03:06:40] 2026-04-27 01:05:40,745 | INFO     | exitmsg: OK
[2026-04-27 03:06:40] 2026-04-27 01:05:40,745 | INFO     | cpuconsumptiontime: 22837 s
[2026-04-27 03:06:40] 2026-04-27 01:05:40,745 | INFO     | nevents: 400
[2026-04-27 03:06:40] 2026-04-27 01:05:40,745 | INFO     | neventsw: 0
[2026-04-27 03:06:40] 2026-04-27 01:05:40,745 | INFO     | pid: 4148940
[2026-04-27 03:06:40] 2026-04-27 01:05:40,745 | INFO     | pgrp: 4148940
[2026-04-27 03:06:40] 2026-04-27 01:05:40,745 | INFO     | corecount: 12
[2026-04-27 03:06:40] 2026-04-27 01:05:40,745 | INFO     | event service: False
[2026-04-27 03:06:40] 2026-04-27 01:05:40,745 | INFO     | sizes: {0: 2276420, 11: 2276420, 2155: 2301510, 2156: 2310532, 2157: 2310588, 2158: 2310814}
[2026-04-27 03:06:40] 2026-04-27 01:05:40,745 | INFO     | --------------------------------------------------
[2026-04-27 03:06:40] 2026-04-27 01:05:40,745 | INFO     | 
[2026-04-27 03:06:40] 2026-04-27 01:05:40,745 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot72/slots/22
[2026-04-27 03:06:40] 2026-04-27 01:05:40,764 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-27 03:06:40] 2026-04-27 01:05:40,764 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-27 03:06:40] 2026-04-27 01:05:40,764 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-27 03:06:40] 2026-04-27 01:05:40,764 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-27 03:06:40] 2026-04-27 01:05:40,764 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-27 03:06:40] 2026-04-27 01:05:40,764 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-27 03:06:40] 2026-04-27 01:05:40,764 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-27 03:06:40] 2026-04-27 01:05:40,764 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-27 03:06:40] 2026-04-27 01:05:40,764 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-27 03:06:40] 2026-04-27 01:05:40,764 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-27 03:06:40] 2026-04-27 01:05:40,764 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-27 03:06:40] 2026-04-27 01:05:40,764 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-27 03:06:40] 2026-04-27 01:05:40,765 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-27 03:06:40] 2026-04-27 01:05:40,765 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-27 03:06:40] 2026-04-27 01:05:40,765 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-27 03:06:40] 2026-04-27 01:05:40,765 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-27 03:06:40] 2026-04-27 01:05:40,765 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-27 03:06:40] 2026-04-27 01:05:40,765 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-27 03:06:40] 2026-04-27 01:05:40,765 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-27 03:06:40] 2026-04-27 01:05:40,765 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-27 03:06:40] 2026-04-27 01:05:40,765 | INFO     | job 7116161391 has completed (purged errors)
[2026-04-27 03:06:40] 2026-04-27 01:05:40,765 | INFO     | overall cleanup function is called
[2026-04-27 03:06:40] 2026-04-27 01:05:41,353 | WARNING  | process 4148940 can no longer be monitored (due to stat problems) - aborting
[2026-04-27 03:06:40] 2026-04-27 01:05:41,607 | INFO     | using path: /var/lib/boinc/var/slot72/slots/22/memory_monitor_summary.json (trf name=prmon)
[2026-04-27 03:06:40] 2026-04-27 01:05:41,772 | INFO     | --- collectZombieJob: --- 10, [4148940]
[2026-04-27 03:06:40] 2026-04-27 01:05:41,772 | INFO     | zombie collector waiting for pid 4148940
[2026-04-27 03:06:40] 2026-04-27 01:05:41,772 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-27 03:06:40] 2026-04-27 01:05:41,772 | INFO     | collected zombie processes
[2026-04-27 03:06:40] 2026-04-27 01:05:41,772 | INFO     | will attempt to kill all subprocesses of pid=4148940
[2026-04-27 03:06:40] 2026-04-27 01:05:42,324 | INFO     | number of running child processes to parent process 4148940: 1
[2026-04-27 03:06:40] 2026-04-27 01:05:42,324 | INFO     | maximum number of monitored processes: 6
[2026-04-27 03:06:40] 2026-04-27 01:05:42,324 | INFO     | aborting job monitoring since job object (job id=7116161391) has expired
[2026-04-27 03:06:40] 2026-04-27 01:05:42,489 | INFO     | process IDs to be killed: [4148940] (in reverse order)
[2026-04-27 03:06:40] 2026-04-27 01:05:42,630 | WARNING  | found no corresponding commands to process id(s)
[2026-04-27 03:06:40] 2026-04-27 01:05:42,630 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-27 03:06:40] 2026-04-27 01:05:42,652 | INFO     | did not find any defunct processes belonging to 4148940
[2026-04-27 03:06:40] 2026-04-27 01:05:42,671 | INFO     | did not find any defunct processes belonging to 4148940
[2026-04-27 03:06:40] 2026-04-27 01:05:42,671 | INFO     | Ready for new job
[2026-04-27 03:06:40] 2026-04-27 01:05:42,672 | INFO     | ***************************************
[2026-04-27 03:06:40] 2026-04-27 01:05:42,672 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-27 03:06:40] 2026-04-27 01:05:42,672 | INFO     | ***************************************
[2026-04-27 03:06:40] 2026-04-27 01:05:42,672 | INFO     | 
[2026-04-27 03:06:40] 2026-04-27 01:05:42,677 | INFO     | architecture information:
[2026-04-27 03:06:40] 2026-04-27 01:05:42,677 | INFO     | executing command: cat /etc/os-release
[2026-04-27 03:06:40] 2026-04-27 01:05:42,693 | INFO     | cat /etc/os-release:
[2026-04-27 03:06:40] NAME="CentOS Linux"
[2026-04-27 03:06:40] VERSION="7 (Core)"
[2026-04-27 03:06:40] ID="centos"
[2026-04-27 03:06:40] ID_LIKE="rhel fedora"
[2026-04-27 03:06:40] VERSION_ID="7"
[2026-04-27 03:06:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-27 03:06:40] ANSI_COLOR="0;31"
[2026-04-27 03:06:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-27 03:06:40] HOME_URL="https://www.centos.org/"
[2026-04-27 03:06:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-27 03:06:40] 
[2026-04-27 03:06:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-27 03:06:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-27 03:06:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-27 03:06:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-27 03:06:40] 
[2026-04-27 03:06:40] 2026-04-27 01:05:42,693 | INFO     | ***************************************
[2026-04-27 03:06:40] 2026-04-27 01:05:43,196 | INFO     | executing command: df -mP /var/lib/boinc/var/slot72/slots/22
[2026-04-27 03:06:40] 2026-04-27 01:05:43,207 | INFO     | sufficient remaining disk space (19020120064 B)
[2026-04-27 03:06:40] 2026-04-27 01:05:43,207 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-27 03:06:40] 2026-04-27 01:05:43,207 | INFO     | current server update state: UPDATING_FINAL
[2026-04-27 03:06:40] 2026-04-27 01:05:43,207 | INFO     | update_server=False
[2026-04-27 03:06:40] 2026-04-27 01:05:43,207 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-27 03:06:40] 2026-04-27 01:05:43,208 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-27 03:06:40] 2026-04-27 01:05:43,208 | INFO     | will abort loop
[2026-04-27 03:06:40] 2026-04-27 01:05:43,573 | INFO     | all data control threads have been joined
[2026-04-27 03:06:40] 2026-04-27 01:05:43,591 | INFO     | all job control threads have been joined
[2026-04-27 03:06:40] 2026-04-27 01:05:43,702 | INFO     | all payload control threads have been joined
[2026-04-27 03:06:40] 2026-04-27 01:05:43,728 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-27 03:06:40] 2026-04-27 01:05:44,212 | INFO     | [job] retrieve thread has finished
[2026-04-27 03:06:40] 2026-04-27 01:05:44,213 | INFO     | [job] job monitor thread has finished
[2026-04-27 03:06:40] 2026-04-27 01:05:44,296 | INFO     | [data] copytool_in thread has finished
[2026-04-27 03:06:40] 2026-04-27 01:05:44,367 | INFO     | [payload] failed_post thread has finished
[2026-04-27 03:06:40] 2026-04-27 01:05:44,578 | INFO     | [data] control thread has finished
[2026-04-27 03:06:40] 2026-04-27 01:05:44,596 | INFO     | [job] control thread has finished
[2026-04-27 03:06:40] 2026-04-27 01:05:44,669 | INFO     | [payload] execute_payloads thread has finished
[2026-04-27 03:06:40] 2026-04-27 01:05:44,707 | INFO     | [payload] control thread has finished
[2026-04-27 03:06:40] 2026-04-27 01:05:45,119 | INFO     | [payload] validate_post thread has finished
[2026-04-27 03:06:40] 2026-04-27 01:05:45,427 | INFO     | [job] validate thread has finished
[2026-04-27 03:06:40] 2026-04-27 01:05:45,489 | INFO     | [job] create_data_payload thread has finished
[2026-04-27 03:06:40] 2026-04-27 01:05:45,547 | INFO     | [payload] validate_pre thread has finished
[2026-04-27 03:06:40] 2026-04-27 01:05:45,671 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-27 03:06:40] 2026-04-27 01:05:45,734 | INFO     | [data] copytool_out thread has finished
[2026-04-27 03:06:40] 2026-04-27 01:05:45,755 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-27 03:06:40] 2026-04-27 01:05:46,758 | INFO     | [job] queue monitor thread has finished
[2026-04-27 03:06:40] 2026-04-27 01:05:49,677 | INFO     | [data] queue_monitor thread has finished
[2026-04-27 03:06:40] 2026-04-27 01:05:54,248 | INFO     | job.realtimelogging is not enabled
[2026-04-27 03:06:40] 2026-04-27 01:05:55,253 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-27 03:06:40] 2026-04-27 01:06:13,616 | INFO     | PID=4143209 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-27 03:06:40] 2026-04-27 01:06:13,617 | INFO     | .. there are 16 such processes running
[2026-04-27 03:06:40] 2026-04-27 01:06:13,618 | INFO     | found 0 job(s) in 20 queues
[2026-04-27 03:06:40] 2026-04-27 01:06:13,618 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-27 03:06:40] 2026-04-27 01:06:13,618 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-27 03:06:40] 2026-04-27 01:06:34,192 | INFO     | [monitor] cgroup control has ended
[2026-04-27 03:06:40] 2026-04-27 01:06:34,946 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22687574124352)>', '<ExcThread(monitor, started 22687265023744)>']
[2026-04-27 03:06:40] 2026-04-27 01:06:35,721 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-27 03:06:40] 2026-04-27 01:06:35,721 | INFO     | [monitor] control thread has ended
[2026-04-27 03:06:40] 2026-04-27 01:06:39,972 | INFO     | all workflow threads have been joined
[2026-04-27 03:06:40] 2026-04-27 01:06:39,972 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-27 03:06:40] 2026-04-27 01:06:39,972 | INFO     | traces error code: 0
[2026-04-27 03:06:40] 2026-04-27 01:06:39,972 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-27 03:06:40] 2026-04-27 01:06:40,119 [wrapper] ==== pilot stdout END ====
[2026-04-27 03:06:40] 2026-04-27 01:06:40,121 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-27 03:06:40] 2026-04-27 01:06:40,123 [wrapper] pilotpid: 4143209
[2026-04-27 03:06:40] 2026-04-27 01:06:40,124 [wrapper] Pilot exit status: 0
[2026-04-27 03:06:40] 2026-04-27 01:06:40,131 [wrapper] pandaids: 7116161391
[2026-04-27 03:06:40] 2026-04-27 01:06:40,231 [wrapper] cleanup supervisor_pilot  195988 4143210
[2026-04-27 03:06:40] 2026-04-27 01:06:40,234 [wrapper] Test setup, not cleaning
[2026-04-27 03:06:40] 2026-04-27 01:06:40,236 [wrapper] apfmon messages muted
[2026-04-27 03:06:40] 2026-04-27 01:06:40,239 [wrapper] ==== wrapper stdout END ====
[2026-04-27 03:06:40] 2026-04-27 01:06:40,241 [wrapper] ==== wrapper stderr END ====
[2026-04-27 03:06:40]  *** Error codes and diagnostics ***
[2026-04-27 03:06:40]     "exeErrorCode": 0,
[2026-04-27 03:06:40]     "pilotErrorCode": 0,
[2026-04-27 03:06:40]  *** Listing of results directory ***
[2026-04-27 03:06:40] total 464120
[2026-04-27 03:06:40] -rw-r--r--. 1 boinc boinc    683926 Apr 26 19:56 pilot3.tar.gz
[2026-04-27 03:06:40] -rw-r--r--. 1 boinc boinc      5631 Apr 26 20:13 queuedata.json
[2026-04-27 03:06:40] -rwx------. 1 boinc boinc     36322 Apr 26 20:14 runpilot2-wrapper.sh
[2026-04-27 03:06:40] -rw-r--r--. 1 boinc boinc       100 Apr 27 02:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-27 03:06:40] -rwxr-xr-x. 1 boinc boinc      7986 Apr 27 02:29 run_atlas
[2026-04-27 03:06:40] -rw-r--r--. 1 boinc boinc       105 Apr 27 02:29 job.xml
[2026-04-27 03:06:40] -rw-r--r--. 1 boinc boinc      6628 Apr 27 02:29 init_data.xml
[2026-04-27 03:06:40] -rw-r--r--. 2 boinc boinc 261517705 Apr 27 02:29 EVNT.49863730._000032.pool.root.1
[2026-04-27 03:06:40] -rw-r--r--. 2 boinc boinc     15667 Apr 27 02:29 start_atlas.sh
[2026-04-27 03:06:40] drwxrwx--x. 2 boinc boinc      4096 Apr 27 02:29 shared
[2026-04-27 03:06:40] -rw-r--r--. 2 boinc boinc    697412 Apr 27 02:29 input.tar.gz
[2026-04-27 03:06:40] -rw-r--r--. 1 boinc boinc         0 Apr 27 02:29 boinc_lockfile
[2026-04-27 03:06:40] -rw-r--r--. 1 boinc boinc      2572 Apr 27 02:29 pandaJob.out
[2026-04-27 03:06:40] -rw-------. 1 boinc boinc    997538 Apr 27 02:29 agis_schedconf.cvmfs.json
[2026-04-27 03:06:40] -rw-------. 1 boinc boinc   1509089 Apr 27 02:29 agis_ddmendpoints.agis.ALL.json
[2026-04-27 03:06:40] -rw-------. 1 boinc boinc       444 Apr 27 02:29 workernode_map.json
[2026-04-27 03:06:40] drwx------. 5 boinc boinc      4096 Apr 27 02:29 pilot3
[2026-04-27 03:06:40] -rw-------. 1 boinc boinc 208447922 Apr 27 03:05 HITS.49863733._000729.pool.root.1
[2026-04-27 03:06:40] -rw-r--r--. 1 boinc boinc       487 Apr 27 03:05 boinc_task_state.xml
[2026-04-27 03:06:40] -rw-------. 1 boinc boinc      1026 Apr 27 03:05 memory_monitor_summary.json
[2026-04-27 03:06:40] -rw-------. 1 boinc boinc    329184 Apr 27 03:05 log.49863733._000729.job.log.tgz.1
[2026-04-27 03:06:40] -rw-------. 1 boinc boinc      6363 Apr 27 03:05 heartbeat_new.json
[2026-04-27 03:06:40] -rw-------. 1 boinc boinc      6254 Apr 27 03:05 heartbeat.json
[2026-04-27 03:06:40] -rw-------. 1 boinc boinc        95 Apr 27 03:06 pilot_heartbeat.json
[2026-04-27 03:06:40] -rw-r--r--. 1 boinc boinc      8192 Apr 27 03:06 boinc_mmap_file
[2026-04-27 03:06:40] -rw-r--r--. 1 boinc boinc        27 Apr 27 03:06 wrapper_checkpoint.txt
[2026-04-27 03:06:40] -rw-------. 1 boinc boinc      4907 Apr 27 03:06 pilotlog.txt
[2026-04-27 03:06:40] -rw-------. 1 boinc boinc    250438 Apr 27 03:06 log.49863733._000729.job.log.1
[2026-04-27 03:06:40] -rw-------. 1 boinc boinc       357 Apr 27 03:06 output.list
[2026-04-27 03:06:40] -rw-r--r--. 1 boinc boinc       410 Apr 27 03:06 runtime_log
[2026-04-27 03:06:40] -rw-------. 1 boinc boinc    593920 Apr 27 03:06 result.tar.gz
[2026-04-27 03:06:40] -rw-r--r--. 1 boinc boinc      8846 Apr 27 03:06 runtime_log.err
[2026-04-27 03:06:40] -rw-------. 1 boinc boinc       657 Apr 27 03:06 55ea29d70e7b.diag
[2026-04-27 03:06:40] -rw-r--r--. 1 boinc boinc     21117 Apr 27 03:06 stderr.txt
[2026-04-27 03:06:40] HITS file was successfully produced:
[2026-04-27 03:06:40] -rw-------. 1 boinc boinc 208447922 Apr 27 03:05 shared/HITS.pool.root.1
[2026-04-27 03:06:40]  *** Contents of shared directory: ***
[2026-04-27 03:06:40] total 460244
[2026-04-27 03:06:40] -rw-r--r--. 2 boinc boinc 261517705 Apr 27 02:29 ATLAS.root_0
[2026-04-27 03:06:40] -rw-r--r--. 2 boinc boinc     15667 Apr 27 02:29 start_atlas.sh
[2026-04-27 03:06:40] -rw-r--r--. 2 boinc boinc    697412 Apr 27 02:29 input.tar.gz
[2026-04-27 03:06:40] -rw-------. 1 boinc boinc 208447922 Apr 27 03:05 HITS.pool.root.1
[2026-04-27 03:06:40] -rw-------. 1 boinc boinc    593920 Apr 27 03:06 result.tar.gz
03:06:42 (4138663): run_atlas exited; CPU time 22903.147834
03:06:42 (4138663): called boinc_finish(0)

</stderr_txt>
]]>

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