Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:37:51 (614671): wrapper (7.7.26015): starting
16:37:51 (614671): wrapper: running run_atlas (--nthreads 8)
[2026-04-26 16:37:51] Arguments: --nthreads 8
[2026-04-26 16:37:51] Threads: 8
[2026-04-26 16:37:51] Checking for CVMFS
[2026-04-26 16:37:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-26 16:37:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-26 16:37:52] Running cvmfs_config stat atlas.cern.ch
[2026-04-26 16:37:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-26 16:37:53] 2.13.3.0 7109 247957 729844 158902 2 314 11610644 21042176 12679 16776704 0 850499277 99.408 1251823887 30184 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-26 16:37:53] CVMFS is ok
[2026-04-26 16:37:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-26 16:37:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-26 16:37:53] Further information can be found at the LHC@home message board.
[2026-04-26 16:37:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-26 16:37:53] Checking for apptainer binary...
[2026-04-26 16:37:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-26 16:37:53] Running /usr/bin/apptainer --version
[2026-04-26 16:37:53] apptainer version 1.4.5-2.el9
[2026-04-26 16:37:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-26 16:37:53] c-16-11.aglt2.org
[2026-04-26 16:37:53] apptainer works
[2026-04-26 16:37:53] Set ATHENA_PROC_NUMBER=8
[2026-04-26 16:37:53] Set ATHENA_CORE_NUMBER=8
[2026-04-26 16:37:53] Starting ATLAS job with PandaID=7116155723
[2026-04-26 16:37:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-27 12:45:48]  *** The last 200 lines of the pilot log: ***
[2026-04-27 12:45:48] 2026-04-27 13:54:25,215 | INFO     | extracted standard memory fields from prmon json
[2026-04-27 12:45:48] 2026-04-27 13:54:25,317 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-27 12:45:48] 2026-04-27 13:54:25,317 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-27 12:45:48] 2026-04-27 13:54:25,954 | INFO     | fitting pss+swap vs Time
[2026-04-27 12:45:48] 2026-04-27 13:54:26,062 | INFO     | sum of square deviations: 327129239432.82916
[2026-04-27 12:45:48] 2026-04-27 13:54:25,979 | INFO     | monitor loop #2839: job 0:7116155723 is in state 'finished'
[2026-04-27 12:45:48] 2026-04-27 13:54:26,196 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-27 12:45:48] 2026-04-27 13:54:27,002 | INFO     | sum of deviations: -370170620896.6128
[2026-04-27 12:45:48] 2026-04-27 13:54:27,002 | INFO     | mean x (centered): 0.0
[2026-04-27 12:45:48] 2026-04-27 13:54:27,002 | INFO     | mean y: 2573845.5815324164
[2026-04-27 12:45:48] 2026-04-27 13:54:27,002 | INFO     | intersect: 2573845.5815324164
[2026-04-27 12:45:48] 2026-04-27 13:54:27,051 | INFO     | chi2: 5.937543102312328
[2026-04-27 12:45:48] 2026-04-27 13:54:27,053 | INFO     | sum of square deviations: 322333076389.7299
[2026-04-27 12:45:48] 2026-04-27 13:54:27,295 | INFO     | sum of deviations: -28452318838.040474
[2026-04-27 12:45:48] 2026-04-27 13:54:27,295 | INFO     | mean x (centered): 0.0
[2026-04-27 12:45:48] 2026-04-27 13:54:27,296 | INFO     | mean y: 2584711.656465943
[2026-04-27 12:45:48] 2026-04-27 13:54:27,296 | INFO     | intersect: 2584711.656465943
[2026-04-27 12:45:48] 2026-04-27 13:54:27,316 | INFO     | chi2: 2.251970719683979
[2026-04-27 12:45:48] 2026-04-27 13:54:27,316 | INFO     | current chi2=2.251970719683979 (change=62.0723474191376 %)
[2026-04-27 12:45:48] 2026-04-27 13:54:27,317 | INFO     | sum of square deviations: 317583474123.2695
[2026-04-27 12:45:48] 2026-04-27 13:54:28,585 | INFO     | sum of deviations: -27972572469.20632
[2026-04-27 12:45:48] 2026-04-27 13:54:28,585 | INFO     | mean x (centered): 0.0
[2026-04-27 12:45:48] 2026-04-27 13:54:28,585 | INFO     | mean y: 2584727.060515873
[2026-04-27 12:45:48] 2026-04-27 13:54:28,586 | INFO     | intersect: 2584727.060515873
[2026-04-27 12:45:48] 2026-04-27 13:54:28,652 | INFO     | chi2: 2.2519772149265127
[2026-04-27 12:45:48] 2026-04-27 13:54:28,652 | INFO     | current chi2=2.2519772149265127 (change=-0.0002884248217273024 %)
[2026-04-27 12:45:48] 2026-04-27 13:54:28,652 | INFO     | right removable region: 1007
[2026-04-27 12:45:48] 2026-04-27 13:54:28,654 | INFO     | sum of square deviations: 322332087327.3251
[2026-04-27 12:45:48] 2026-04-27 13:54:28,775 | INFO     | monitor loop #2840: job 0:7116155723 is in state 'finished'
[2026-04-27 12:45:48] 2026-04-27 13:54:28,775 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-27 12:45:48] 2026-04-27 13:54:28,940 | INFO     | sum of deviations: -555534762725.7704
[2026-04-27 12:45:48] 2026-04-27 13:54:28,940 | INFO     | mean x (centered): 0.0
[2026-04-27 12:45:48] 2026-04-27 13:54:28,941 | INFO     | mean y: 2579727.204343534
[2026-04-27 12:45:48] 2026-04-27 13:54:28,945 | INFO     | intersect: 2579727.204343534
[2026-04-27 12:45:48] 2026-04-27 13:54:28,947 | INFO     | chi2: 4.299744958824188
[2026-04-27 12:45:48] 2026-04-27 13:54:28,947 | INFO     | current chi2=4.299744958824188 (change=27.583768492565774 %)
[2026-04-27 12:45:48] 2026-04-27 13:54:28,948 | INFO     | sum of square deviations: 317582052384.14215
[2026-04-27 12:45:48] 2026-04-27 13:54:29,056 | INFO     | sum of deviations: -550339156854.4014
[2026-04-27 12:45:48] 2026-04-27 13:54:29,056 | INFO     | mean x (centered): 0.0
[2026-04-27 12:45:48] 2026-04-27 13:54:29,056 | INFO     | mean y: 2579559.1696428573
[2026-04-27 12:45:48] 2026-04-27 13:54:29,057 | INFO     | intersect: 2579559.1696428573
[2026-04-27 12:45:48] 2026-04-27 13:54:29,058 | INFO     | chi2: 4.2920464356082455
[2026-04-27 12:45:48] 2026-04-27 13:54:29,058 | INFO     | current chi2=4.2920464356082455 (change=0.17904604318781167 %)
[2026-04-27 12:45:48] 2026-04-27 13:54:29,059 | INFO     | left removable region: 10
[2026-04-27 12:45:48] 2026-04-27 13:54:29,060 | INFO     | sum of square deviations: 307298346921.2563
[2026-04-27 12:45:48] 2026-04-27 13:54:29,103 | INFO     | sum of deviations: -209456194923.2904
[2026-04-27 12:45:48] 2026-04-27 13:54:29,103 | INFO     | mean x (centered): 0.0
[2026-04-27 12:45:48] 2026-04-27 13:54:29,103 | INFO     | mean y: 2590615.959879639
[2026-04-27 12:45:48] 2026-04-27 13:54:29,103 | INFO     | intersect: 2590615.959879639
[2026-04-27 12:45:48] 2026-04-27 13:54:29,105 | INFO     | chi2: 0.5830152589847453
[2026-04-27 12:45:48] 2026-04-27 13:54:29,105 | INFO     | current memory leak: -0.68 B/s (using 997 data points, chi2=0.58)
[2026-04-27 12:45:48] 2026-04-27 13:54:29,106 | INFO     | could have reported an average CPU frequency of 2900 MHz (38 samples)
[2026-04-27 12:45:48] 2026-04-27 13:54:29,107 | INFO     | ..............................
[2026-04-27 12:45:48] 2026-04-27 13:54:29,107 | INFO     | . Timing measurements:
[2026-04-27 12:45:48] 2026-04-27 13:54:29,107 | INFO     | . get job = 0 s
[2026-04-27 12:45:48] 2026-04-27 13:54:29,107 | INFO     | . initial setup = 17 s
[2026-04-27 12:45:48] 2026-04-27 13:54:29,107 | INFO     | . payload setup = 21 s
[2026-04-27 12:45:48] 2026-04-27 13:54:29,107 | INFO     | . stage-in = 0 s
[2026-04-27 12:45:48] 2026-04-27 13:54:29,107 | INFO     | . payload execution = 62048 s
[2026-04-27 12:45:48] 2026-04-27 13:54:29,108 | INFO     | . stage-out = 34 s
[2026-04-27 12:45:48] 2026-04-27 13:54:29,108 | INFO     | . log creation = 8 s
[2026-04-27 12:45:48] 2026-04-27 13:54:29,108 | INFO     | ..............................
[2026-04-27 12:45:48] 2026-04-27 13:54:29,757 | INFO     | 
[2026-04-27 12:45:48] 2026-04-27 13:54:29,757 | INFO     | job summary report
[2026-04-27 12:45:48] 2026-04-27 13:54:29,757 | INFO     | --------------------------------------------------
[2026-04-27 12:45:48] 2026-04-27 13:54:29,757 | INFO     | PanDA job id: 7116155723
[2026-04-27 12:45:48] 2026-04-27 13:54:29,757 | INFO     | task id: 49820208
[2026-04-27 12:45:48] 2026-04-27 13:54:29,758 | INFO     | errors: (none)
[2026-04-27 12:45:48] 2026-04-27 13:54:29,758 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-27 12:45:48] 2026-04-27 13:54:29,758 | INFO     | pilot state: finished 
[2026-04-27 12:45:48] 2026-04-27 13:54:29,758 | INFO     | transexitcode: 0
[2026-04-27 12:45:48] 2026-04-27 13:54:29,758 | INFO     | exeerrorcode: 0
[2026-04-27 12:45:48] 2026-04-27 13:54:29,758 | INFO     | exeerrordiag: 
[2026-04-27 12:45:48] 2026-04-27 13:54:29,759 | INFO     | exitcode: 0
[2026-04-27 12:45:48] 2026-04-27 13:54:29,759 | INFO     | exitmsg: OK
[2026-04-27 12:45:48] 2026-04-27 13:54:29,759 | INFO     | cpuconsumptiontime: 103902 s
[2026-04-27 12:45:48] 2026-04-27 13:54:29,759 | INFO     | nevents: 400
[2026-04-27 12:45:48] 2026-04-27 13:54:29,759 | INFO     | neventsw: 0
[2026-04-27 12:45:48] 2026-04-27 13:54:29,759 | INFO     | pid: 641765
[2026-04-27 12:45:48] 2026-04-27 13:54:29,760 | INFO     | pgrp: 641765
[2026-04-27 12:45:48] 2026-04-27 13:54:29,760 | INFO     | corecount: 8
[2026-04-27 12:45:48] 2026-04-27 13:54:29,760 | INFO     | event service: False
[2026-04-27 12:45:48] 2026-04-27 13:54:29,760 | INFO     | sizes: {0: 2273960, 1: 2274645, 2: 2274900, 3: 2276474, 13: 2276502, 62082: 2327519, 62086: 2327646, 62123: 2336404, 62129: 2336460, 62137: 2336654}
[2026-04-27 12:45:48] 2026-04-27 13:54:29,760 | INFO     | --------------------------------------------------
[2026-04-27 12:45:48] 2026-04-27 13:54:29,760 | INFO     | 
[2026-04-27 12:45:48] 2026-04-27 13:54:29,761 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-04-27 12:45:48] 2026-04-27 13:54:30,061 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-27 12:45:48] 2026-04-27 13:54:30,062 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-27 12:45:48] 2026-04-27 13:54:30,062 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-27 12:45:48] 2026-04-27 13:54:30,062 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-27 12:45:48] 2026-04-27 13:54:30,062 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-27 12:45:48] 2026-04-27 13:54:30,062 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-27 12:45:48] 2026-04-27 13:54:30,063 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-27 12:45:48] 2026-04-27 13:54:30,063 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-27 12:45:48] 2026-04-27 13:54:30,063 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-27 12:45:48] 2026-04-27 13:54:30,063 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-27 12:45:48] 2026-04-27 13:54:30,063 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-27 12:45:48] 2026-04-27 13:54:30,063 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-27 12:45:48] 2026-04-27 13:54:30,064 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-27 12:45:48] 2026-04-27 13:54:30,064 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-27 12:45:48] 2026-04-27 13:54:30,064 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-27 12:45:48] 2026-04-27 13:54:30,064 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-27 12:45:48] 2026-04-27 13:54:30,064 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-27 12:45:48] 2026-04-27 13:54:30,064 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-27 12:45:48] 2026-04-27 13:54:30,065 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-27 12:45:48] 2026-04-27 13:54:30,226 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-27 12:45:48] 2026-04-27 13:54:30,226 | INFO     | job 7116155723 has completed (purged errors)
[2026-04-27 12:45:48] 2026-04-27 13:54:30,227 | INFO     | overall cleanup function is called
[2026-04-27 12:45:48] 2026-04-27 13:54:31,513 | INFO     | --- collectZombieJob: --- 10, [641765]
[2026-04-27 12:45:48] 2026-04-27 13:54:31,513 | INFO     | zombie collector waiting for pid 641765
[2026-04-27 12:45:48] 2026-04-27 13:54:31,573 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-27 12:45:48] 2026-04-27 13:54:31,573 | INFO     | collected zombie processes
[2026-04-27 12:45:48] 2026-04-27 13:54:31,573 | INFO     | will attempt to kill all subprocesses of pid=641765
[2026-04-27 12:45:48] 2026-04-27 13:54:33,730 | INFO     | PID=624911 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-27 12:45:48] 2026-04-27 13:54:33,731 | INFO     | .. there are 31 such processes running
[2026-04-27 12:45:48] 2026-04-27 13:54:36,946 | INFO     | process IDs to be killed: [641765] (in reverse order)
[2026-04-27 12:45:48] 2026-04-27 13:54:39,924 | WARNING  | found no corresponding commands to process id(s)
[2026-04-27 12:45:48] 2026-04-27 13:54:39,925 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-27 12:45:48] 2026-04-27 13:54:40,189 | INFO     | did not find any defunct processes belonging to 641765
[2026-04-27 12:45:48] 2026-04-27 13:54:40,383 | INFO     | did not find any defunct processes belonging to 641765
[2026-04-27 12:45:48] 2026-04-27 13:54:40,383 | INFO     | Ready for new job
[2026-04-27 12:45:48] 2026-04-27 13:54:40,413 | INFO     | ***************************************
[2026-04-27 12:45:48] 2026-04-27 13:54:40,413 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-27 12:45:48] 2026-04-27 13:54:40,413 | INFO     | ***************************************
[2026-04-27 12:45:48] 2026-04-27 13:54:40,414 | INFO     | 
[2026-04-27 12:45:48] 2026-04-27 13:54:40,444 | INFO     | architecture information:
[2026-04-27 12:45:48] 2026-04-27 13:54:40,454 | INFO     | executing command: cat /etc/os-release
[2026-04-27 12:45:48] 2026-04-27 13:54:40,625 | INFO     | cat /etc/os-release:
[2026-04-27 12:45:48] NAME="CentOS Linux"
[2026-04-27 12:45:48] VERSION="7 (Core)"
[2026-04-27 12:45:48] ID="centos"
[2026-04-27 12:45:48] ID_LIKE="rhel fedora"
[2026-04-27 12:45:48] VERSION_ID="7"
[2026-04-27 12:45:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-27 12:45:48] ANSI_COLOR="0;31"
[2026-04-27 12:45:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-27 12:45:48] HOME_URL="https://www.centos.org/"
[2026-04-27 12:45:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-27 12:45:48] 
[2026-04-27 12:45:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-27 12:45:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-27 12:45:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-27 12:45:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-27 12:45:48] 
[2026-04-27 12:45:48] 2026-04-27 13:54:40,626 | INFO     | ***************************************
[2026-04-27 12:45:48] 2026-04-27 13:54:41,129 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-04-27 12:45:48] 2026-04-27 13:54:41,282 | INFO     | sufficient remaining disk space (32718716928 B)
[2026-04-27 12:45:48] 2026-04-27 13:54:41,288 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-27 12:45:48] 2026-04-27 13:54:41,288 | INFO     | current server update state: UPDATING_FINAL
[2026-04-27 12:45:48] 2026-04-27 13:54:41,288 | INFO     | update_server=False
[2026-04-27 12:45:48] 2026-04-27 13:54:41,288 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-27 12:45:48] 2026-04-27 13:54:41,289 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-27 12:45:48] 2026-04-27 13:54:41,497 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-27 12:45:48] 2026-04-27 13:54:41,497 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-27 12:45:48] 2026-04-27 13:54:41,498 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-27 12:45:48] 2026-04-27 13:54:41,498 | INFO     | will abort loop
[2026-04-27 12:45:48] 2026-04-27 13:54:41,600 | INFO     | all payload control threads have been joined
[2026-04-27 12:45:48] 2026-04-27 13:54:42,132 | INFO     | all job control threads have been joined
[2026-04-27 12:45:48] 2026-04-27 13:54:42,294 | INFO     | [job] retrieve thread has finished
[2026-04-27 12:45:48] 2026-04-27 13:54:42,346 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-27 12:45:48] 2026-04-27 13:54:42,427 | INFO     | [job] create_data_payload thread has finished
[2026-04-27 12:45:48] 2026-04-27 13:54:42,435 | INFO     | all data control threads have been joined
[2026-04-27 12:45:48] 2026-04-27 13:54:42,453 | INFO     | [data] copytool_in thread has finished
[2026-04-27 12:45:48] 2026-04-27 13:54:42,459 | INFO     | [payload] execute_payloads thread has finished
[2026-04-27 12:45:48] 2026-04-27 13:54:42,504 | INFO     | [job] job monitor thread has finished
[2026-04-27 12:45:48] 2026-04-27 13:54:42,517 | INFO     | [payload] failed_post thread has finished
[2026-04-27 12:45:48] 2026-04-27 13:54:42,552 | INFO     | [job] validate thread has finished
[2026-04-27 12:45:48] 2026-04-27 13:54:42,606 | INFO     | [payload] control thread has finished
[2026-04-27 12:45:48] 2026-04-27 13:54:42,864 | INFO     | [payload] validate_pre thread has finished
[2026-04-27 12:45:48] 2026-04-27 13:54:43,138 | INFO     | [job] control thread has finished
[2026-04-27 12:45:48] 2026-04-27 13:54:43,194 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-27 12:45:48] 2026-04-27 13:54:43,247 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-27 12:45:48] 2026-04-27 13:54:43,323 | INFO     | [data] copytool_out thread has finished
[2026-04-27 12:45:48] 2026-04-27 13:54:43,394 | INFO     | [payload] validate_post thread has finished
[2026-04-27 12:45:48] 2026-04-27 13:54:43,441 | INFO     | [data] control thread has finished
[2026-04-27 12:45:48] 2026-04-27 13:54:44,200 | INFO     | [job] queue monitor thread has finished
[2026-04-27 12:45:48] 2026-04-27 13:54:47,264 | INFO     | [data] queue_monitor thread has finished
[2026-04-27 12:45:48] 2026-04-27 13:55:00,100 | INFO     | [monitor] cgroup control has ended
[2026-04-27 12:45:48] 2026-04-27 13:55:00,265 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139991120717632)>', '<ExcThread(monitor, started 139990432478976)>']
[2026-04-27 12:45:48] 2026-04-27 13:55:05,291 | INFO     | all workflow threads have been joined
[2026-04-27 12:45:48] 2026-04-27 13:55:05,291 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-27 12:45:48] 2026-04-27 13:55:05,292 | INFO     | traces error code: 0
[2026-04-27 12:45:48] 2026-04-27 13:55:05,292 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-27 12:45:48] 2026-04-27 13:55:31,591 | INFO     | PID=624911 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-27 12:45:48] 2026-04-27 13:55:31,591 | INFO     | .. there are 31 such processes running
[2026-04-27 12:45:48] 2026-04-27 13:55:31,643 | INFO     | found 0 job(s) in 20 queues
[2026-04-27 12:45:48] 2026-04-27 13:55:31,643 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-27 12:45:48] 2026-04-27 13:55:31,643 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-27 12:45:48] 2026-04-27 13:55:31,643 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-27 12:45:48] 2026-04-27 13:55:31,644 | INFO     | [monitor] control thread has ended
[2026-04-27 12:45:48] 2026-04-27 13:55:34,142 [wrapper] ==== pilot stdout END ====
[2026-04-27 12:45:48] 2026-04-27 13:55:34,163 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-27 12:45:48] 2026-04-27 13:55:34,183 [wrapper] pilotpid: 624911
[2026-04-27 12:45:48] 2026-04-27 13:55:34,230 [wrapper] Pilot exit status: 0
[2026-04-27 12:45:48] 2026-04-27 13:55:34,451 [wrapper] pandaids: 7116155723
[2026-04-27 12:45:48] 2026-04-27 13:55:34,605 [wrapper] cleanup supervisor_pilot  364996 624912
[2026-04-27 12:45:48] 2026-04-27 13:55:34,682 [wrapper] Test setup, not cleaning
[2026-04-27 12:45:48] 2026-04-27 13:55:34,719 [wrapper] apfmon messages muted
[2026-04-27 12:45:48] 2026-04-27 13:55:34,793 [wrapper] ==== wrapper stdout END ====
[2026-04-27 12:45:48] 2026-04-27 13:55:34,857 [wrapper] ==== wrapper stderr END ====
[2026-04-27 12:45:48]  *** Error codes and diagnostics ***
[2026-04-27 12:45:48]     "exeErrorCode": 0,
[2026-04-27 12:45:48]     "pilotErrorCode": 0,
[2026-04-27 12:45:48]  *** Listing of results directory ***
[2026-04-27 12:45:48] total 1717396
[2026-04-27 12:45:48] -rw-r--r--. 1 boincer umatlas     683926 Apr 26 13:05 pilot3.tar.gz
[2026-04-27 12:45:48] -rw-r--r--. 1 boincer umatlas       5631 Apr 26 13:25 queuedata.json
[2026-04-27 12:45:48] -rwx------. 1 boincer umatlas      36322 Apr 26 13:25 runpilot2-wrapper.sh
[2026-04-27 12:45:48] -rw-r--r--. 1 boincer umatlas        100 Apr 26 16:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-27 12:45:48] -rwxr-xr-x. 1 boincer umatlas       7986 Apr 26 16:37 run_atlas
[2026-04-27 12:45:48] -rw-r--r--. 1 boincer umatlas        105 Apr 26 16:37 job.xml
[2026-04-27 12:45:48] -rw-r--r--. 2 boincer umatlas 1513028686 Apr 26 16:37 EVNT.49820205._000001.pool.root.1
[2026-04-27 12:45:48] -rw-r--r--. 2 boincer umatlas     697399 Apr 26 16:37 input.tar.gz
[2026-04-27 12:45:48] -rw-r--r--. 2 boincer umatlas      15667 Apr 26 16:37 start_atlas.sh
[2026-04-27 12:45:48] drwxrwx--x. 2 boincer umatlas       4096 Apr 26 16:37 shared
[2026-04-27 12:45:48] -rw-r--r--. 1 boincer umatlas          0 Apr 26 16:37 boinc_lockfile
[2026-04-27 12:45:48] -rw-r--r--. 1 boincer umatlas       2544 Apr 26 16:37 pandaJob.out
[2026-04-27 12:45:48] -rw-------. 1 boincer umatlas         57 Apr 26 16:37 setup.sh.local
[2026-04-27 12:45:48] -rw-------. 1 boincer umatlas     997538 Apr 26 16:38 agis_schedconf.cvmfs.json
[2026-04-27 12:45:48] -rw-------. 1 boincer umatlas        441 Apr 26 16:38 workernode_map.json
[2026-04-27 12:45:48] drwx------. 5 boincer umatlas       4096 Apr 26 16:38 pilot3
[2026-04-27 12:45:48] -rw-------. 1 boincer umatlas  231712419 Apr 27 09:49 HITS.49820208._000112.pool.root.1
[2026-04-27 12:45:48] -rw-r--r--. 1 boincer umatlas        491 Apr 27 09:49 boinc_task_state.xml
[2026-04-27 12:45:48] -rw-------. 1 boincer umatlas       1052 Apr 27 09:53 memory_monitor_summary.json
[2026-04-27 12:45:48] -rw-------. 1 boincer umatlas    1508585 Apr 27 09:53 agis_ddmendpoints.agis.ALL.json
[2026-04-27 12:45:48] -rw-------. 1 boincer umatlas     831060 Apr 27 09:54 log.49820208._000112.job.log.tgz.1
[2026-04-27 12:45:48] -rw-------. 1 boincer umatlas       6423 Apr 27 09:54 heartbeat_new.json
[2026-04-27 12:45:48] -rw-------. 1 boincer umatlas       6314 Apr 27 09:54 heartbeat.json
[2026-04-27 12:45:48] -rw-------. 1 boincer umatlas         95 Apr 27 09:55 pilot_heartbeat.json
[2026-04-27 12:45:48] -rw-------. 1 boincer umatlas        822 Apr 27 09:55 pilotlog.txt
[2026-04-27 12:45:48] -rw-------. 1 boincer umatlas    4039694 Apr 27 09:55 log.49820208._000112.job.log.1
[2026-04-27 12:45:48] -rw-------. 1 boincer umatlas        357 Apr 27 09:55 output.list
[2026-04-27 12:45:48] -rw-r--r--. 1 boincer umatlas        410 Apr 27 09:55 runtime_log
[2026-04-27 12:45:48] -rw-------. 1 boincer umatlas    4884480 Apr 27 09:55 result.tar.gz
[2026-04-27 12:45:48] -rw-r--r--. 1 boincer umatlas       8960 Apr 27 09:55 runtime_log.err
[2026-04-27 12:45:48] -rw-------. 1 boincer umatlas        662 Apr 27 09:55 4a9cfc66431c.diag
[2026-04-27 12:45:48] -rw-r--r--. 1 boincer umatlas       6441 Apr 27 12:45 init_data.xml
[2026-04-27 12:45:48] -rw-r--r--. 1 boincer umatlas       8192 Apr 27 12:45 boinc_mmap_file
[2026-04-27 12:45:48] -rw-r--r--. 1 boincer umatlas         29 Apr 27 12:45 wrapper_checkpoint.txt
[2026-04-27 12:45:48] -rw-r--r--. 1 boincer umatlas      21198 Apr 27 12:45 stderr.txt
[2026-04-27 12:45:48] HITS file was successfully produced:
[2026-04-27 12:45:48] -rw-------. 1 boincer umatlas 231712419 Apr 27 09:49 shared/HITS.pool.root.1
[2026-04-27 12:45:48]  *** Contents of shared directory: ***
[2026-04-27 12:45:48] total 1709332
[2026-04-27 12:45:48] -rw-r--r--. 2 boincer umatlas 1513028686 Apr 26 16:37 ATLAS.root_0
[2026-04-27 12:45:48] -rw-r--r--. 2 boincer umatlas     697399 Apr 26 16:37 input.tar.gz
[2026-04-27 12:45:48] -rw-r--r--. 2 boincer umatlas      15667 Apr 26 16:37 start_atlas.sh
[2026-04-27 12:45:48] -rw-------. 1 boincer umatlas  231712419 Apr 27 09:49 HITS.pool.root.1
[2026-04-27 12:45:48] -rw-------. 1 boincer umatlas    4884480 Apr 27 09:55 result.tar.gz
12:45:50 (614671): run_atlas exited; CPU time 106230.874550
12:45:50 (614671): called boinc_finish(0)

</stderr_txt>
]]>

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