Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:20:43 (3531843): wrapper (7.7.26015): starting
14:20:43 (3531843): wrapper: running run_atlas (--nthreads 12)
[2026-04-27 14:20:43] Arguments: --nthreads 12
[2026-04-27 14:20:43] Threads: 12
[2026-04-27 14:20:43] Checking for CVMFS
[2026-04-27 14:20:43] No cvmfs_config command found, will try listing directly
[2026-04-27 14:20:43] CVMFS is ok
[2026-04-27 14:20:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-27 14:20:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-27 14:20:43] Further information can be found at the LHC@home message board.
[2026-04-27 14:20:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-27 14:20:43] Checking for apptainer binary...
[2026-04-27 14:20:43] which: no apptainer in ((null))
[2026-04-27 14:20:43] apptainer is not installed, using version from CVMFS
[2026-04-27 14:20:43] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-27 14:20:43] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot228/slots/2/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2026-04-27 14:20:43] apptainer works
[2026-04-27 14:20:43] Set ATHENA_PROC_NUMBER=12
[2026-04-27 14:20:43] Set ATHENA_CORE_NUMBER=12
[2026-04-27 14:20:43] Starting ATLAS job with PandaID=7114673782
[2026-04-27 14:20:43] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot228/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-27 15:06:06]  *** The last 200 lines of the pilot log: ***
[2026-04-27 15:06:06]  filetype=log
[2026-04-27 15:06:06]  guid=c2354115-e904-488b-b44d-e2127aa6a165
[2026-04-27 15:06:06]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-04-27 15:06:06]  is_altstaged=None
[2026-04-27 15:06:06]  is_tar=False
[2026-04-27 15:06:06]  lfn=log.49863714._000376.job.log.tgz.1
[2026-04-27 15:06:06]  mtime=0
[2026-04-27 15:06:06]  protocol_id=None
[2026-04-27 15:06:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-27 15:06:06]  replicas=None
[2026-04-27 15:06:06]  scope=mc23_13p6TeV
[2026-04-27 15:06:06]  status=None
[2026-04-27 15:06:06]  status_code=0
[2026-04-27 15:06:06]  storage_token=
[2026-04-27 15:06:06]  surl=/var/lib/boinc/var/slot228/slots/2/PanDA_Pilot-7114673782/log.49863714._000376.job.log.tgz.1
[2026-04-27 15:06:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/06/32/log.49863714._000376.job.log.tgz.1
[2026-04-27 15:06:06]  workdir=None
[2026-04-27 15:06:06] ]
[2026-04-27 15:06:06] 2026-04-27 13:03:56,815 | INFO     | transferring file log.49863714._000376.job.log.tgz.1 from /var/lib/boinc/var/slot228/slots/2/PanDA_Pilot-7114673782/log.49863714._000376.job.log.tgz.1 to /var/lib/
[2026-04-27 15:06:06] 2026-04-27 13:03:56,815 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot228/slots/2/PanDA_Pilot-7114673782/log.49863714._000376.job.log.tgz.1 /var/lib/boinc/var/slot228/slots/2/
[2026-04-27 15:06:06] 2026-04-27 13:03:56,833 | INFO     | adding to output.list: log.49863714._000376.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/06/32/log.49863714._000376.job.log.tg
[2026-04-27 15:06:06] 2026-04-27 13:03:56,833 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-27 15:06:06] 2026-04-27 13:03:56,833 | INFO     | summary of transferred files:
[2026-04-27 15:06:06] 2026-04-27 13:03:56,833 | INFO     |  -- lfn=log.49863714._000376.job.log.tgz.1, status_code=0, status=transferred
[2026-04-27 15:06:06] 2026-04-27 13:03:56,833 | INFO     | stage-out finished correctly
[2026-04-27 15:06:06] 2026-04-27 13:03:57,328 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-27 15:06:06] 2026-04-27 13:03:57,377 | INFO     | job 7114673782 has state=finished
[2026-04-27 15:06:06] 2026-04-27 13:03:57,377 | INFO     | preparing for final server update for job 7114673782 in state='finished'
[2026-04-27 15:06:06] 2026-04-27 13:03:57,826 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-04-27 15:06:06] 2026-04-27 13:03:57,826 | INFO     | reading metadata from: /var/lib/boinc/var/slot228/slots/2/PanDA_Pilot-7114673782/jobReport.json
[2026-04-27 15:06:06] 2026-04-27 13:03:57,828 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot228/slots/2/workernode_map.json
[2026-04-27 15:06:06] 2026-04-27 13:03:57,828 | INFO     | this job has now completed (state=finished)
[2026-04-27 15:06:06] 2026-04-27 13:03:57,828 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-27 15:06:06] 2026-04-27 13:03:57,828 | INFO     | log transfer has been attempted: DONE
[2026-04-27 15:06:06] 2026-04-27 13:03:57,828 | INFO     | job 7114673782 has finished - writing final server update
[2026-04-27 15:06:06] 2026-04-27 13:03:57,829 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2080709/.job.ad'
[2026-04-27 15:06:06] 2026-04-27 13:03:57,829 | INFO     | total number of processed events: 400 (read)
[2026-04-27 15:06:06] 2026-04-27 13:03:57,846 | INFO     | using path: /var/lib/boinc/var/slot228/slots/2/PanDA_Pilot-7114673782/memory_monitor_summary.json (trf name=prmon)
[2026-04-27 15:06:06] 2026-04-27 13:03:57,846 | INFO     | extracted standard info from prmon json
[2026-04-27 15:06:06] 2026-04-27 13:03:57,846 | INFO     | extracted standard memory fields from prmon json
[2026-04-27 15:06:06] 2026-04-27 13:03:57,846 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-27 15:06:06] 2026-04-27 13:03:57,846 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-27 15:06:06] 2026-04-27 13:03:57,847 | INFO     | fitting pss+swap vs Time
[2026-04-27 15:06:06] 2026-04-27 13:03:57,847 | INFO     | sum of square deviations: 13283970.0
[2026-04-27 15:06:06] 2026-04-27 13:03:57,847 | INFO     | sum of deviations: 183536861.00000003
[2026-04-27 15:06:06] 2026-04-27 13:03:57,847 | INFO     | mean x (centered): 0.0
[2026-04-27 15:06:06] 2026-04-27 13:03:57,847 | INFO     | mean y: 2757705.257142857
[2026-04-27 15:06:06] 2026-04-27 13:03:57,847 | INFO     | intersect: 2757705.257142857
[2026-04-27 15:06:06] 2026-04-27 13:03:57,847 | INFO     | chi2: 0.00019078184978025208
[2026-04-27 15:06:06] 2026-04-27 13:03:57,848 | INFO     | current memory leak: 13.82 B/s (using 35 data points, chi2=0.00)
[2026-04-27 15:06:06] 2026-04-27 13:03:57,848 | INFO     | could have reported an average CPU frequency of 3614 MHz (5 samples)
[2026-04-27 15:06:06] 2026-04-27 13:03:57,848 | INFO     | ..............................
[2026-04-27 15:06:06] 2026-04-27 13:03:57,848 | INFO     | . Timing measurements:
[2026-04-27 15:06:06] 2026-04-27 13:03:57,848 | INFO     | . get job = 0 s
[2026-04-27 15:06:06] 2026-04-27 13:03:57,848 | INFO     | . initial setup = 4 s
[2026-04-27 15:06:06] 2026-04-27 13:03:57,848 | INFO     | . payload setup = 6 s
[2026-04-27 15:06:06] 2026-04-27 13:03:57,848 | INFO     | . stage-in = 0 s
[2026-04-27 15:06:06] 2026-04-27 13:03:57,848 | INFO     | . payload execution = 2560 s
[2026-04-27 15:06:06] 2026-04-27 13:03:57,848 | INFO     | . stage-out = 0 s
[2026-04-27 15:06:06] 2026-04-27 13:03:57,848 | INFO     | . log creation = 0 s
[2026-04-27 15:06:06] 2026-04-27 13:03:57,848 | INFO     | ..............................
[2026-04-27 15:06:06] 2026-04-27 13:03:57,896 | INFO     | 
[2026-04-27 15:06:06] 2026-04-27 13:03:57,897 | INFO     | job summary report
[2026-04-27 15:06:06] 2026-04-27 13:03:57,897 | INFO     | --------------------------------------------------
[2026-04-27 15:06:06] 2026-04-27 13:03:57,897 | INFO     | PanDA job id: 7114673782
[2026-04-27 15:06:06] 2026-04-27 13:03:57,897 | INFO     | task id: 49863714
[2026-04-27 15:06:06] 2026-04-27 13:03:57,897 | INFO     | errors: (none)
[2026-04-27 15:06:06] 2026-04-27 13:03:57,897 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-27 15:06:06] 2026-04-27 13:03:57,897 | INFO     | pilot state: finished 
[2026-04-27 15:06:06] 2026-04-27 13:03:57,897 | INFO     | transexitcode: 0
[2026-04-27 15:06:06] 2026-04-27 13:03:57,897 | INFO     | exeerrorcode: 0
[2026-04-27 15:06:06] 2026-04-27 13:03:57,897 | INFO     | exeerrordiag: 
[2026-04-27 15:06:06] 2026-04-27 13:03:57,897 | INFO     | exitcode: 0
[2026-04-27 15:06:06] 2026-04-27 13:03:57,897 | INFO     | exitmsg: OK
[2026-04-27 15:06:06] 2026-04-27 13:03:57,897 | INFO     | cpuconsumptiontime: 27951 s
[2026-04-27 15:06:06] 2026-04-27 13:03:57,897 | INFO     | nevents: 400
[2026-04-27 15:06:06] 2026-04-27 13:03:57,897 | INFO     | neventsw: 0
[2026-04-27 15:06:06] 2026-04-27 13:03:57,897 | INFO     | pid: 3554348
[2026-04-27 15:06:06] 2026-04-27 13:03:57,897 | INFO     | pgrp: 3554348
[2026-04-27 15:06:06] 2026-04-27 13:03:57,897 | INFO     | corecount: 12
[2026-04-27 15:06:06] 2026-04-27 13:03:57,897 | INFO     | event service: False
[2026-04-27 15:06:06] 2026-04-27 13:03:57,897 | INFO     | sizes: {0: 2278394, 1: 2280052, 11: 2280052, 2571: 2305283, 2572: 2314361, 2573: 2314531}
[2026-04-27 15:06:06] 2026-04-27 13:03:57,897 | INFO     | --------------------------------------------------
[2026-04-27 15:06:06] 2026-04-27 13:03:57,897 | INFO     | 
[2026-04-27 15:06:06] 2026-04-27 13:03:57,898 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot228/slots/2
[2026-04-27 15:06:06] 2026-04-27 13:03:57,920 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-27 15:06:06] 2026-04-27 13:03:57,920 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-27 15:06:06] 2026-04-27 13:03:57,920 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-27 15:06:06] 2026-04-27 13:03:57,920 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-27 15:06:06] 2026-04-27 13:03:57,920 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-27 15:06:06] 2026-04-27 13:03:57,920 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-27 15:06:06] 2026-04-27 13:03:57,920 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-27 15:06:06] 2026-04-27 13:03:57,920 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-27 15:06:06] 2026-04-27 13:03:57,920 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-27 15:06:06] 2026-04-27 13:03:57,920 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-27 15:06:06] 2026-04-27 13:03:57,920 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-27 15:06:06] 2026-04-27 13:03:57,920 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-27 15:06:06] 2026-04-27 13:03:57,920 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-27 15:06:06] 2026-04-27 13:03:57,921 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-27 15:06:06] 2026-04-27 13:03:57,921 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-27 15:06:06] 2026-04-27 13:03:57,921 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-27 15:06:06] 2026-04-27 13:03:57,921 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-27 15:06:06] 2026-04-27 13:03:57,921 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-27 15:06:06] 2026-04-27 13:03:57,921 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-27 15:06:06] 2026-04-27 13:03:57,921 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-27 15:06:06] 2026-04-27 13:03:57,921 | INFO     | job 7114673782 has completed (purged errors)
[2026-04-27 15:06:06] 2026-04-27 13:03:57,921 | INFO     | overall cleanup function is called
[2026-04-27 15:06:06] 2026-04-27 13:03:58,928 | INFO     | --- collectZombieJob: --- 10, [3554348]
[2026-04-27 15:06:06] 2026-04-27 13:03:58,928 | INFO     | zombie collector waiting for pid 3554348
[2026-04-27 15:06:06] 2026-04-27 13:03:58,928 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-27 15:06:06] 2026-04-27 13:03:58,928 | INFO     | collected zombie processes
[2026-04-27 15:06:06] 2026-04-27 13:03:58,928 | INFO     | will attempt to kill all subprocesses of pid=3554348
[2026-04-27 15:06:06] 2026-04-27 13:03:59,227 | INFO     | process IDs to be killed: [3554348] (in reverse order)
[2026-04-27 15:06:06] 2026-04-27 13:03:59,386 | WARNING  | found no corresponding commands to process id(s)
[2026-04-27 15:06:06] 2026-04-27 13:03:59,386 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-27 15:06:06] 2026-04-27 13:03:59,411 | INFO     | did not find any defunct processes belonging to 3554348
[2026-04-27 15:06:06] 2026-04-27 13:03:59,433 | INFO     | did not find any defunct processes belonging to 3554348
[2026-04-27 15:06:06] 2026-04-27 13:03:59,434 | INFO     | Ready for new job
[2026-04-27 15:06:06] 2026-04-27 13:03:59,435 | INFO     | ***************************************
[2026-04-27 15:06:06] 2026-04-27 13:03:59,435 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-27 15:06:06] 2026-04-27 13:03:59,435 | INFO     | ***************************************
[2026-04-27 15:06:06] 2026-04-27 13:03:59,435 | INFO     | 
[2026-04-27 15:06:06] 2026-04-27 13:03:59,441 | INFO     | architecture information:
[2026-04-27 15:06:06] 2026-04-27 13:03:59,441 | INFO     | executing command: cat /etc/os-release
[2026-04-27 15:06:06] 2026-04-27 13:03:59,452 | INFO     | cat /etc/os-release:
[2026-04-27 15:06:06] NAME="CentOS Linux"
[2026-04-27 15:06:06] VERSION="7 (Core)"
[2026-04-27 15:06:06] ID="centos"
[2026-04-27 15:06:06] ID_LIKE="rhel fedora"
[2026-04-27 15:06:06] VERSION_ID="7"
[2026-04-27 15:06:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-27 15:06:06] ANSI_COLOR="0;31"
[2026-04-27 15:06:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-27 15:06:06] HOME_URL="https://www.centos.org/"
[2026-04-27 15:06:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-27 15:06:06] 
[2026-04-27 15:06:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-27 15:06:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-27 15:06:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-27 15:06:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-27 15:06:06] 
[2026-04-27 15:06:06] 2026-04-27 13:03:59,452 | INFO     | ***************************************
[2026-04-27 15:06:06] 2026-04-27 13:03:59,955 | INFO     | executing command: df -mP /var/lib/boinc/var/slot228/slots/2
[2026-04-27 15:06:06] 2026-04-27 13:03:59,978 | INFO     | sufficient remaining disk space (9847177216 B)
[2026-04-27 15:06:06] 2026-04-27 13:03:59,979 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-27 15:06:06] 2026-04-27 13:03:59,979 | INFO     | current server update state: UPDATING_FINAL
[2026-04-27 15:06:06] 2026-04-27 13:03:59,979 | INFO     | update_server=False
[2026-04-27 15:06:06] 2026-04-27 13:03:59,979 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-27 15:06:06] 2026-04-27 13:03:59,979 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-27 15:06:06] 2026-04-27 13:04:00,252 | INFO     | all payload control threads have been joined
[2026-04-27 15:06:06] 2026-04-27 13:04:00,391 | INFO     | all data control threads have been joined
[2026-04-27 15:06:06] 2026-04-27 13:04:00,752 | INFO     | all job control threads have been joined
[2026-04-27 15:06:06] 2026-04-27 13:04:00,984 | INFO     | [job] retrieve thread has finished
[2026-04-27 15:06:06] 2026-04-27 13:04:01,258 | INFO     | [payload] control thread has finished
[2026-04-27 15:06:06] 2026-04-27 13:04:01,365 | INFO     | [payload] execute_payloads thread has finished
[2026-04-27 15:06:06] 2026-04-27 13:04:01,396 | INFO     | [data] control thread has finished
[2026-04-27 15:06:06] 2026-04-27 13:04:01,581 | INFO     | [payload] failed_post thread has finished
[2026-04-27 15:06:06] 2026-04-27 13:04:01,758 | INFO     | [job] control thread has finished
[2026-04-27 15:06:06] 2026-04-27 13:04:01,895 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-27 15:06:06] 2026-04-27 13:04:01,965 | INFO     | [job] validate thread has finished
[2026-04-27 15:06:06] 2026-04-27 13:04:01,985 | INFO     | [data] copytool_out thread has finished
[2026-04-27 15:06:06] 2026-04-27 13:04:02,045 | INFO     | [payload] validate_post thread has finished
[2026-04-27 15:06:06] 2026-04-27 13:04:02,101 | INFO     | [job] create_data_payload thread has finished
[2026-04-27 15:06:06] 2026-04-27 13:04:02,245 | INFO     | [payload] validate_pre thread has finished
[2026-04-27 15:06:06] 2026-04-27 13:04:02,387 | INFO     | [data] copytool_in thread has finished
[2026-04-27 15:06:06] 2026-04-27 13:04:02,564 | WARNING  | process 3554348 can no longer be monitored (due to stat problems) - aborting
[2026-04-27 15:06:06] 2026-04-27 13:04:02,828 | INFO     | using path: /var/lib/boinc/var/slot228/slots/2/memory_monitor_summary.json (trf name=prmon)
[2026-04-27 15:06:06] 2026-04-27 13:04:02,907 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-27 15:06:06] 2026-04-27 13:04:03,119 | INFO     | number of running child processes to parent process 3554348: 1
[2026-04-27 15:06:06] 2026-04-27 13:04:03,119 | INFO     | maximum number of monitored processes: 6
[2026-04-27 15:06:06] 2026-04-27 13:04:03,119 | INFO     | aborting job monitoring since job object (job id=7114673782) has expired
[2026-04-27 15:06:06] 2026-04-27 13:04:03,119 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-27 15:06:06] 2026-04-27 13:04:03,119 | INFO     | will abort loop
[2026-04-27 15:06:06] 2026-04-27 13:04:03,383 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-27 15:06:06] 2026-04-27 13:04:03,913 | INFO     | [job] queue monitor thread has finished
[2026-04-27 15:06:06] 2026-04-27 13:04:04,124 | INFO     | [job] job monitor thread has finished
[2026-04-27 15:06:06] 2026-04-27 13:04:07,389 | INFO     | [data] queue_monitor thread has finished
[2026-04-27 15:06:06] 2026-04-27 13:04:29,445 | INFO     | PID=3540409 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-27 15:06:06] 2026-04-27 13:04:29,446 | INFO     | .. there are 14 such processes running
[2026-04-27 15:06:06] 2026-04-27 13:04:29,446 | INFO     | found 0 job(s) in 20 queues
[2026-04-27 15:06:06] 2026-04-27 13:04:29,446 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-27 15:06:06] 2026-04-27 13:04:29,446 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-27 15:06:06] 2026-04-27 13:04:58,157 | INFO     | [monitor] cgroup control has ended
[2026-04-27 15:06:06] 2026-04-27 13:04:59,309 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23079615977280)>', '<ExcThread(monitor, started 23079383488256)>']
[2026-04-27 15:06:06] 2026-04-27 13:04:59,596 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-27 15:06:06] 2026-04-27 13:04:59,596 | INFO     | [monitor] control thread has ended
[2026-04-27 15:06:06] 2026-04-27 13:05:04,334 | INFO     | all workflow threads have been joined
[2026-04-27 15:06:06] 2026-04-27 13:05:04,335 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-27 15:06:06] 2026-04-27 13:05:04,335 | INFO     | traces error code: 0
[2026-04-27 15:06:06] 2026-04-27 13:05:04,335 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-27 15:06:06] 2026-04-27 13:05:04,462 [wrapper] ==== pilot stdout END ====
[2026-04-27 15:06:06] 2026-04-27 13:05:04,464 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-27 15:06:06] 2026-04-27 13:05:04,466 [wrapper] pilotpid: 3540409
[2026-04-27 15:06:06] 2026-04-27 13:05:04,468 [wrapper] Pilot exit status: 0
[2026-04-27 15:06:06] 2026-04-27 13:05:04,475 [wrapper] pandaids: 7114673782
[2026-04-27 15:06:06] 2026-04-27 13:05:04,573 [wrapper] cleanup supervisor_pilot 3783110 3540410
[2026-04-27 15:06:06] 2026-04-27 13:05:04,575 [wrapper] Test setup, not cleaning
[2026-04-27 15:06:06] 2026-04-27 13:05:04,577 [wrapper] apfmon messages muted
[2026-04-27 15:06:06] 2026-04-27 13:05:04,579 [wrapper] ==== wrapper stdout END ====
[2026-04-27 15:06:06] 2026-04-27 13:05:04,581 [wrapper] ==== wrapper stderr END ====
[2026-04-27 15:06:06]  *** Error codes and diagnostics ***
[2026-04-27 15:06:06]     "exeErrorCode": 0,
[2026-04-27 15:06:06]     "pilotErrorCode": 0,
[2026-04-27 15:06:06]  *** Listing of results directory ***
[2026-04-27 15:06:06] total 471436
[2026-04-27 15:06:06] -rw-r--r--. 1 boinc boinc    683926 Apr 26 14:59 pilot3.tar.gz
[2026-04-27 15:06:06] -rwx------. 1 boinc boinc     36322 Apr 26 15:41 runpilot2-wrapper.sh
[2026-04-27 15:06:06] -rw-r--r--. 1 boinc boinc      5631 Apr 26 15:44 queuedata.json
[2026-04-27 15:06:06] -rw-r--r--. 1 boinc boinc       100 Apr 27 14:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-27 15:06:06] -rwxr-xr-x. 1 boinc boinc      7986 Apr 27 14:20 run_atlas
[2026-04-27 15:06:06] -rw-r--r--. 1 boinc boinc       105 Apr 27 14:20 job.xml
[2026-04-27 15:06:06] -rw-r--r--. 1 boinc boinc      6630 Apr 27 14:20 init_data.xml
[2026-04-27 15:06:06] -rw-r--r--. 2 boinc boinc 261524114 Apr 27 14:20 EVNT.49863712._000016.pool.root.1
[2026-04-27 15:06:06] -rw-r--r--. 2 boinc boinc     15667 Apr 27 14:20 start_atlas.sh
[2026-04-27 15:06:06] drwxrwx--x. 2 boinc boinc      4096 Apr 27 14:20 shared
[2026-04-27 15:06:06] -rw-r--r--. 2 boinc boinc    697417 Apr 27 14:20 input.tar.gz
[2026-04-27 15:06:06] -rw-r--r--. 1 boinc boinc         0 Apr 27 14:20 boinc_lockfile
[2026-04-27 15:06:06] -rw-r--r--. 1 boinc boinc      2572 Apr 27 14:20 pandaJob.out
[2026-04-27 15:06:06] -rw-------. 1 boinc boinc    996913 Apr 27 14:20 agis_schedconf.cvmfs.json
[2026-04-27 15:06:06] -rw-------. 1 boinc boinc   1510700 Apr 27 14:20 agis_ddmendpoints.agis.ALL.json
[2026-04-27 15:06:06] -rw-------. 1 boinc boinc       445 Apr 27 14:20 workernode_map.json
[2026-04-27 15:06:06] drwx------. 5 boinc boinc      4096 Apr 27 14:20 pilot3
[2026-04-27 15:06:06] -rw-------. 1 boinc boinc 215857585 Apr 27 15:03 HITS.49863714._000376.pool.root.1
[2026-04-27 15:06:06] -rw-r--r--. 1 boinc boinc       487 Apr 27 15:03 boinc_task_state.xml
[2026-04-27 15:06:06] -rw-------. 1 boinc boinc        95 Apr 27 15:03 pilot_heartbeat.json
[2026-04-27 15:06:06] -rw-------. 1 boinc boinc      1030 Apr 27 15:03 memory_monitor_summary.json
[2026-04-27 15:06:06] -rw-------. 1 boinc boinc    328846 Apr 27 15:03 log.49863714._000376.job.log.tgz.1
[2026-04-27 15:06:06] -rw-------. 1 boinc boinc      6366 Apr 27 15:03 heartbeat_new.json
[2026-04-27 15:06:06] -rw-------. 1 boinc boinc      6257 Apr 27 15:03 heartbeat.json
[2026-04-27 15:06:06] -rw-------. 1 boinc boinc      5365 Apr 27 15:05 pilotlog.txt
[2026-04-27 15:06:06] -rw-------. 1 boinc boinc    286792 Apr 27 15:05 log.49863714._000376.job.log.1
[2026-04-27 15:06:06] -rw-------. 1 boinc boinc       357 Apr 27 15:05 output.list
[2026-04-27 15:06:06] -rw-r--r--. 1 boinc boinc       410 Apr 27 15:05 runtime_log
[2026-04-27 15:06:06] -rw-------. 1 boinc boinc    634880 Apr 27 15:05 result.tar.gz
[2026-04-27 15:06:06] -rw-r--r--. 1 boinc boinc      8846 Apr 27 15:05 runtime_log.err
[2026-04-27 15:06:06] -rw-------. 1 boinc boinc       661 Apr 27 15:05 161cc71d77e5.diag
[2026-04-27 15:06:06] -rw-r--r--. 1 boinc boinc        27 Apr 27 15:06 wrapper_checkpoint.txt
[2026-04-27 15:06:06] -rw-r--r--. 1 boinc boinc      8192 Apr 27 15:06 boinc_mmap_file
[2026-04-27 15:06:06] -rw-r--r--. 1 boinc boinc     21140 Apr 27 15:06 stderr.txt
[2026-04-27 15:06:06] HITS file was successfully produced:
[2026-04-27 15:06:06] -rw-------. 1 boinc boinc 215857585 Apr 27 15:03 shared/HITS.pool.root.1
[2026-04-27 15:06:06]  *** Contents of shared directory: ***
[2026-04-27 15:06:06] total 467524
[2026-04-27 15:06:06] -rw-r--r--. 2 boinc boinc 261524114 Apr 27 14:20 ATLAS.root_0
[2026-04-27 15:06:06] -rw-r--r--. 2 boinc boinc     15667 Apr 27 14:20 start_atlas.sh
[2026-04-27 15:06:06] -rw-r--r--. 2 boinc boinc    697417 Apr 27 14:20 input.tar.gz
[2026-04-27 15:06:06] -rw-------. 1 boinc boinc 215857585 Apr 27 15:03 HITS.pool.root.1
[2026-04-27 15:06:06] -rw-------. 1 boinc boinc    634880 Apr 27 15:05 result.tar.gz
15:06:07 (3531843): run_atlas exited; CPU time 28025.882286
15:06:07 (3531843): called boinc_finish(0)

</stderr_txt>
]]>

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