Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:02:26 (14237): wrapper (7.7.26015): starting
00:02:26 (14237): wrapper: running run_atlas (--nthreads 8)
[2026-04-27 00:02:26] Arguments: --nthreads 8
[2026-04-27 00:02:26] Threads: 8
[2026-04-27 00:02:26] Checking for CVMFS
[2026-04-27 00:02:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-27 00:02:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-27 00:02:29] Running cvmfs_config stat atlas.cern.ch
[2026-04-27 00:02:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-27 00:02:30] 2.11.2.0 19479 16123 99652 158904 2 54 20174132 25165824 96 130560 0 5671314 99.938 5123027 13733 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-27 00:02:30] CVMFS is ok
[2026-04-27 00:02:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-27 00:02:30] Checking for apptainer binary...
[2026-04-27 00:02:30] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-27 00:02:30] Running /usr/bin/apptainer --version
[2026-04-27 00:02:31] apptainer version 1.3.2-1.el7
[2026-04-27 00:02:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-27 00:02:52] cg-vwn451.simple-grid.lan
[2026-04-27 00:02:52] apptainer works
[2026-04-27 00:02:52] Set ATHENA_PROC_NUMBER=8
[2026-04-27 00:02:52] Set ATHENA_CORE_NUMBER=8
[2026-04-27 00:02:52] Starting ATLAS job with PandaID=7116117651
[2026-04-27 00:02:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/26 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-27 05:45:56]  *** The last 200 lines of the pilot log: ***
[2026-04-27 05:45:56] 2026-04-27 03:44:42,495 | INFO     | this job has now completed (state=finished)
[2026-04-27 05:45:56] 2026-04-27 03:44:42,495 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-27 05:45:56] 2026-04-27 03:44:42,495 | INFO     | log transfer has been attempted: DONE
[2026-04-27 05:45:56] 2026-04-27 03:44:42,495 | INFO     | job 7116117651 has finished - writing final server update
[2026-04-27 05:45:56] 2026-04-27 03:44:42,496 | INFO     | total number of processed events: 400 (read)
[2026-04-27 05:45:56] 2026-04-27 03:44:42,498 | INFO     | using path: /var/lib/boinc/slots/26/PanDA_Pilot-7116117651/memory_monitor_summary.json (trf name=prmon)
[2026-04-27 05:45:56] 2026-04-27 03:44:42,499 | INFO     | extracted standard info from prmon json
[2026-04-27 05:45:56] 2026-04-27 03:44:42,499 | INFO     | extracted standard memory fields from prmon json
[2026-04-27 05:45:56] 2026-04-27 03:44:42,499 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-27 05:45:56] 2026-04-27 03:44:42,499 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-27 05:45:56] 2026-04-27 03:44:42,506 | INFO     | fitting pss+swap vs Time
[2026-04-27 05:45:56] 2026-04-27 03:44:42,507 | INFO     | sum of square deviations: 10743038637.5
[2026-04-27 05:45:56] 2026-04-27 03:44:42,510 | INFO     | sum of deviations: 82976220113.49998
[2026-04-27 05:45:56] 2026-04-27 03:44:42,510 | INFO     | mean x (centered): 0.0
[2026-04-27 05:45:56] 2026-04-27 03:44:42,510 | INFO     | mean y: 2499716.579754601
[2026-04-27 05:45:56] 2026-04-27 03:44:42,510 | INFO     | intersect: 2499716.579754601
[2026-04-27 05:45:56] 2026-04-27 03:44:42,511 | INFO     | chi2: 9.22252474032268
[2026-04-27 05:45:56] 2026-04-27 03:44:42,512 | INFO     | sum of square deviations: 10256266720.0
[2026-04-27 05:45:56] 2026-04-27 03:44:42,515 | INFO     | sum of deviations: 125524519000.0
[2026-04-27 05:45:56] 2026-04-27 03:44:42,515 | INFO     | mean x (centered): 0.0
[2026-04-27 05:45:56] 2026-04-27 03:44:42,515 | INFO     | mean y: 2512918.0716510904
[2026-04-27 05:45:56] 2026-04-27 03:44:42,515 | INFO     | intersect: 2512918.0716510904
[2026-04-27 05:45:56] 2026-04-27 03:44:42,516 | INFO     | chi2: 7.778047021702592
[2026-04-27 05:45:56] 2026-04-27 03:44:42,516 | INFO     | current chi2=7.778047021702592 (change=15.662497627190405 %)
[2026-04-27 05:45:56] 2026-04-27 03:44:42,516 | INFO     | right removable region: 320
[2026-04-27 05:45:56] 2026-04-27 03:44:42,517 | INFO     | sum of square deviations: 10256266720.0
[2026-04-27 05:45:56] 2026-04-27 03:44:42,520 | INFO     | sum of deviations: -37044620521.0
[2026-04-27 05:45:56] 2026-04-27 03:44:42,521 | INFO     | mean x (centered): 0.0
[2026-04-27 05:45:56] 2026-04-27 03:44:42,521 | INFO     | mean y: 2537306.785046729
[2026-04-27 05:45:56] 2026-04-27 03:44:42,521 | INFO     | intersect: 2537306.785046729
[2026-04-27 05:45:56] 2026-04-27 03:44:42,521 | INFO     | chi2: 4.070446540841662
[2026-04-27 05:45:56] 2026-04-27 03:44:42,522 | INFO     | current chi2=4.070446540841662 (change=55.86407566851109 %)
[2026-04-27 05:45:56] 2026-04-27 03:44:42,522 | INFO     | sum of square deviations: 9784425315.0
[2026-04-27 05:45:56] 2026-04-27 03:44:42,526 | INFO     | sum of deviations: -112050443781.00002
[2026-04-27 05:45:56] 2026-04-27 03:44:42,526 | INFO     | mean x (centered): 0.0
[2026-04-27 05:45:56] 2026-04-27 03:44:42,526 | INFO     | mean y: 2561482.4683544305
[2026-04-27 05:45:56] 2026-04-27 03:44:42,526 | INFO     | intersect: 2561482.4683544305
[2026-04-27 05:45:56] 2026-04-27 03:44:42,527 | INFO     | chi2: 1.9362117499907
[2026-04-27 05:45:56] 2026-04-27 03:44:42,527 | INFO     | current chi2=1.9362117499907 (change=52.432448613111085 %)
[2026-04-27 05:45:56] 2026-04-27 03:44:42,527 | INFO     | sum of square deviations: 9327281860.0
[2026-04-27 05:45:56] 2026-04-27 03:44:42,531 | INFO     | sum of deviations: -122447790569.0
[2026-04-27 05:45:56] 2026-04-27 03:44:42,531 | INFO     | mean x (centered): 0.0
[2026-04-27 05:45:56] 2026-04-27 03:44:42,531 | INFO     | mean y: 2564937.488745981
[2026-04-27 05:45:56] 2026-04-27 03:44:42,531 | INFO     | intersect: 2564937.488745981
[2026-04-27 05:45:56] 2026-04-27 03:44:42,532 | INFO     | chi2: 1.861251078826427
[2026-04-27 05:45:56] 2026-04-27 03:44:42,532 | INFO     | current chi2=1.861251078826427 (change=3.871512047410776 %)
[2026-04-27 05:45:56] 2026-04-27 03:44:42,532 | INFO     | left removable region: 15
[2026-04-27 05:45:56] 2026-04-27 03:44:42,532 | INFO     | sum of square deviations: 8797783560.0
[2026-04-27 05:45:56] 2026-04-27 03:44:42,536 | INFO     | sum of deviations: -78517418982.99992
[2026-04-27 05:45:56] 2026-04-27 03:44:42,536 | INFO     | mean x (centered): 0.0
[2026-04-27 05:45:56] 2026-04-27 03:44:42,536 | INFO     | mean y: 2579931.750819672
[2026-04-27 05:45:56] 2026-04-27 03:44:42,536 | INFO     | intersect: 2579931.750819672
[2026-04-27 05:45:56] 2026-04-27 03:44:42,537 | INFO     | chi2: 0.2742179091873278
[2026-04-27 05:45:56] 2026-04-27 03:44:42,537 | INFO     | current memory leak: -8.92 B/s (using 305 data points, chi2=0.27)
[2026-04-27 05:45:56] 2026-04-27 03:44:42,537 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2026-04-27 05:45:56] 2026-04-27 03:44:42,538 | INFO     | ..............................
[2026-04-27 05:45:56] 2026-04-27 03:44:42,538 | INFO     | . Timing measurements:
[2026-04-27 05:45:56] 2026-04-27 03:44:42,538 | INFO     | . get job = 0 s
[2026-04-27 05:45:56] 2026-04-27 03:44:42,538 | INFO     | . initial setup = 118 s
[2026-04-27 05:45:56] 2026-04-27 03:44:42,538 | INFO     | . payload setup = 169 s
[2026-04-27 05:45:56] 2026-04-27 03:44:42,538 | INFO     | . stage-in = 0 s
[2026-04-27 05:45:56] 2026-04-27 03:44:42,538 | INFO     | . payload execution = 19940 s
[2026-04-27 05:45:56] 2026-04-27 03:44:42,538 | INFO     | . stage-out = 4 s
[2026-04-27 05:45:56] 2026-04-27 03:44:42,539 | INFO     | . log creation = 1 s
[2026-04-27 05:45:56] 2026-04-27 03:44:42,539 | INFO     | ..............................
[2026-04-27 05:45:56] 2026-04-27 03:44:42,853 | INFO     | 
[2026-04-27 05:45:56] 2026-04-27 03:44:42,853 | INFO     | job summary report
[2026-04-27 05:45:56] 2026-04-27 03:44:42,853 | INFO     | --------------------------------------------------
[2026-04-27 05:45:56] 2026-04-27 03:44:42,853 | INFO     | PanDA job id: 7116117651
[2026-04-27 05:45:56] 2026-04-27 03:44:42,854 | INFO     | task id: 49863714
[2026-04-27 05:45:56] 2026-04-27 03:44:42,854 | INFO     | errors: (none)
[2026-04-27 05:45:56] 2026-04-27 03:44:42,854 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-27 05:45:56] 2026-04-27 03:44:42,854 | INFO     | pilot state: finished 
[2026-04-27 05:45:56] 2026-04-27 03:44:42,854 | INFO     | transexitcode: 0
[2026-04-27 05:45:56] 2026-04-27 03:44:42,854 | INFO     | exeerrorcode: 0
[2026-04-27 05:45:56] 2026-04-27 03:44:42,854 | INFO     | exeerrordiag: 
[2026-04-27 05:45:56] 2026-04-27 03:44:42,854 | INFO     | exitcode: 0
[2026-04-27 05:45:56] 2026-04-27 03:44:42,854 | INFO     | exitmsg: OK
[2026-04-27 05:45:56] 2026-04-27 03:44:42,855 | INFO     | cpuconsumptiontime: 84822 s
[2026-04-27 05:45:56] 2026-04-27 03:44:42,855 | INFO     | nevents: 400
[2026-04-27 05:45:56] 2026-04-27 03:44:42,855 | INFO     | neventsw: 0
[2026-04-27 05:45:56] 2026-04-27 03:44:42,855 | INFO     | pid: 22704
[2026-04-27 05:45:56] 2026-04-27 03:44:42,855 | INFO     | pgrp: 22704
[2026-04-27 05:45:56] 2026-04-27 03:44:42,855 | INFO     | corecount: 8
[2026-04-27 05:45:56] 2026-04-27 03:44:42,855 | INFO     | event service: False
[2026-04-27 05:45:56] 2026-04-27 03:44:42,855 | INFO     | sizes: {0: 2274613, 1: 2275014, 2: 2276442, 12: 2276470, 20114: 2309840, 20115: 2309839, 20120: 2319023, 20121: 2319273}
[2026-04-27 05:45:56] 2026-04-27 03:44:42,855 | INFO     | --------------------------------------------------
[2026-04-27 05:45:56] 2026-04-27 03:44:42,856 | INFO     | 
[2026-04-27 05:45:56] 2026-04-27 03:44:42,856 | INFO     | executing command: ls -lF /var/lib/boinc/slots/26
[2026-04-27 05:45:56] 2026-04-27 03:44:42,980 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-27 05:45:56] 2026-04-27 03:44:42,981 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-27 05:45:56] 2026-04-27 03:44:42,981 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-27 05:45:56] 2026-04-27 03:44:42,981 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-27 05:45:56] 2026-04-27 03:44:42,981 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-27 05:45:56] 2026-04-27 03:44:42,981 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-27 05:45:56] 2026-04-27 03:44:42,981 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-27 05:45:56] 2026-04-27 03:44:42,982 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-27 05:45:56] 2026-04-27 03:44:42,982 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-27 05:45:56] 2026-04-27 03:44:42,982 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-27 05:45:56] 2026-04-27 03:44:42,982 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-27 05:45:56] 2026-04-27 03:44:42,982 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-27 05:45:56] 2026-04-27 03:44:42,982 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-27 05:45:56] 2026-04-27 03:44:42,982 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-27 05:45:56] 2026-04-27 03:44:42,982 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-27 05:45:56] 2026-04-27 03:44:42,983 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-27 05:45:56] 2026-04-27 03:44:42,983 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-27 05:45:56] 2026-04-27 03:44:42,983 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-27 05:45:56] 2026-04-27 03:44:42,983 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-27 05:45:56] 2026-04-27 03:44:42,983 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-27 05:45:56] 2026-04-27 03:44:42,983 | INFO     | job 7116117651 has completed (purged errors)
[2026-04-27 05:45:56] 2026-04-27 03:44:42,983 | INFO     | overall cleanup function is called
[2026-04-27 05:45:56] 2026-04-27 03:44:43,992 | INFO     | --- collectZombieJob: --- 10, [22704]
[2026-04-27 05:45:56] 2026-04-27 03:44:43,992 | INFO     | zombie collector waiting for pid 22704
[2026-04-27 05:45:56] 2026-04-27 03:44:43,992 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-27 05:45:56] 2026-04-27 03:44:43,992 | INFO     | collected zombie processes
[2026-04-27 05:45:56] 2026-04-27 03:44:43,993 | INFO     | will attempt to kill all subprocesses of pid=22704
[2026-04-27 05:45:56] 2026-04-27 03:44:44,055 | INFO     | process IDs to be killed: [22704] (in reverse order)
[2026-04-27 05:45:56] 2026-04-27 03:44:44,925 | WARNING  | found no corresponding commands to process id(s)
[2026-04-27 05:45:56] 2026-04-27 03:44:44,925 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-27 05:45:56] 2026-04-27 03:44:44,927 | INFO     | did not find any defunct processes belonging to 22704
[2026-04-27 05:45:56] 2026-04-27 03:44:44,929 | INFO     | did not find any defunct processes belonging to 22704
[2026-04-27 05:45:56] 2026-04-27 03:44:44,929 | INFO     | Ready for new job
[2026-04-27 05:45:56] 2026-04-27 03:44:44,931 | INFO     | ***************************************
[2026-04-27 05:45:56] 2026-04-27 03:44:44,932 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-27 05:45:56] 2026-04-27 03:44:44,932 | INFO     | ***************************************
[2026-04-27 05:45:56] 2026-04-27 03:44:44,932 | INFO     | 
[2026-04-27 05:45:56] 2026-04-27 03:44:44,932 | INFO     | pilot is running in a VM
[2026-04-27 05:45:56] 2026-04-27 03:44:44,933 | INFO     | architecture information:
[2026-04-27 05:45:56] 2026-04-27 03:44:44,938 | INFO     | executing command: cat /etc/os-release
[2026-04-27 05:45:56] 2026-04-27 03:44:45,352 | INFO     | cat /etc/os-release:
[2026-04-27 05:45:56] NAME="CentOS Linux"
[2026-04-27 05:45:56] VERSION="7 (Core)"
[2026-04-27 05:45:56] ID="centos"
[2026-04-27 05:45:56] ID_LIKE="rhel fedora"
[2026-04-27 05:45:56] VERSION_ID="7"
[2026-04-27 05:45:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-27 05:45:56] ANSI_COLOR="0;31"
[2026-04-27 05:45:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-27 05:45:56] HOME_URL="https://www.centos.org/"
[2026-04-27 05:45:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-27 05:45:56] 
[2026-04-27 05:45:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-27 05:45:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-27 05:45:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-27 05:45:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-27 05:45:56] 
[2026-04-27 05:45:56] 2026-04-27 03:44:45,353 | INFO     | ***************************************
[2026-04-27 05:45:56] 2026-04-27 03:44:45,859 | INFO     | executing command: df -mP /var/lib/boinc/slots/26
[2026-04-27 05:45:56] 2026-04-27 03:44:45,912 | INFO     | sufficient remaining disk space (494674116608 B)
[2026-04-27 05:45:56] 2026-04-27 03:44:45,912 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-27 05:45:56] 2026-04-27 03:44:45,913 | INFO     | current server update state: UPDATING_FINAL
[2026-04-27 05:45:56] 2026-04-27 03:44:45,913 | INFO     | update_server=False
[2026-04-27 05:45:56] 2026-04-27 03:44:45,913 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-27 05:45:56] 2026-04-27 03:44:45,914 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-27 05:45:56] 2026-04-27 03:44:46,219 | INFO     | all payload control threads have been joined
[2026-04-27 05:45:56] 2026-04-27 03:44:46,723 | INFO     | all data control threads have been joined
[2026-04-27 05:45:56] 2026-04-27 03:44:46,839 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-27 05:45:56] 2026-04-27 03:44:46,839 | INFO     | aborting loop
[2026-04-27 05:45:56] 2026-04-27 03:44:46,924 | INFO     | [job] retrieve thread has finished
[2026-04-27 05:45:56] 2026-04-27 03:44:47,106 | INFO     | all job control threads have been joined
[2026-04-27 05:45:56] 2026-04-27 03:44:47,216 | INFO     | [payload] validate_post thread has finished
[2026-04-27 05:45:56] 2026-04-27 03:44:47,225 | INFO     | [payload] control thread has finished
[2026-04-27 05:45:56] 2026-04-27 03:44:47,232 | INFO     | [data] copytool_in thread has finished
[2026-04-27 05:45:56] 2026-04-27 03:44:47,491 | INFO     | [payload] validate_pre thread has finished
[2026-04-27 05:45:56] 2026-04-27 03:44:47,510 | INFO     | [payload] failed_post thread has finished
[2026-04-27 05:45:56] 2026-04-27 03:44:47,679 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-27 05:45:56] 2026-04-27 03:44:47,729 | INFO     | [data] control thread has finished
[2026-04-27 05:45:56] 2026-04-27 03:44:47,812 | INFO     | [job] create_data_payload thread has finished
[2026-04-27 05:45:56] 2026-04-27 03:44:47,845 | INFO     | [job] job monitor thread has finished
[2026-04-27 05:45:56] 2026-04-27 03:44:47,881 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-27 05:45:56] 2026-04-27 03:44:47,921 | INFO     | [data] copytool_out thread has finished
[2026-04-27 05:45:56] 2026-04-27 03:44:48,001 | INFO     | [payload] execute_payloads thread has finished
[2026-04-27 05:45:56] 2026-04-27 03:44:48,112 | INFO     | [job] control thread has finished
[2026-04-27 05:45:56] 2026-04-27 03:44:48,170 | INFO     | [job] validate thread has finished
[2026-04-27 05:45:56] 2026-04-27 03:44:48,493 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-27 05:45:56] 2026-04-27 03:44:48,685 | INFO     | [job] queue monitor thread has finished
[2026-04-27 05:45:56] 2026-04-27 03:44:52,504 | INFO     | [data] queue_monitor thread has finished
[2026-04-27 05:45:56] 2026-04-27 03:45:14,835 | INFO     | PID=18219 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-27 05:45:56] 2026-04-27 03:45:14,835 | INFO     | .. there are 2 such processes running
[2026-04-27 05:45:56] 2026-04-27 03:45:14,842 | INFO     | found 0 job(s) in 20 queues
[2026-04-27 05:45:56] 2026-04-27 03:45:14,842 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-27 05:45:56] 2026-04-27 03:45:14,842 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-27 05:45:56] 2026-04-27 03:45:44,487 | INFO     | [monitor] cgroup control has ended
[2026-04-27 05:45:56] 2026-04-27 03:45:45,697 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139637660469056)>', '<ExcThread(monitor, started 139637087524608)>']
[2026-04-27 05:45:56] 2026-04-27 03:45:46,028 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-27 05:45:56] 2026-04-27 03:45:46,028 | INFO     | [monitor] control thread has ended
[2026-04-27 05:45:56] 2026-04-27 03:45:50,723 | INFO     | all workflow threads have been joined
[2026-04-27 05:45:56] 2026-04-27 03:45:50,723 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-27 05:45:56] 2026-04-27 03:45:50,723 | INFO     | traces error code: 0
[2026-04-27 05:45:56] 2026-04-27 03:45:50,724 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-27 05:45:56] 2026-04-27 03:45:51,160 [wrapper] ==== pilot stdout END ====
[2026-04-27 05:45:56] 2026-04-27 03:45:51,264 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-27 05:45:56] 2026-04-27 03:45:51,378 [wrapper] pilotpid: 18219
[2026-04-27 05:45:56] 2026-04-27 03:45:51,486 [wrapper] Pilot exit status: 0
[2026-04-27 05:45:56] 2026-04-27 03:45:52,015 [wrapper] pandaids: 7116117651
[2026-04-27 05:45:56] 2026-04-27 03:45:53,194 [wrapper] cleanup supervisor_pilot  9672 18220
[2026-04-27 05:45:56] 2026-04-27 03:45:53,346 [wrapper] Test setup, not cleaning
[2026-04-27 05:45:56] 2026-04-27 03:45:53,453 [wrapper] apfmon messages muted
[2026-04-27 05:45:56] 2026-04-27 03:45:53,514 [wrapper] ==== wrapper stdout END ====
[2026-04-27 05:45:56] 2026-04-27 03:45:53,615 [wrapper] ==== wrapper stderr END ====
[2026-04-27 05:45:56]  *** Error codes and diagnostics ***
[2026-04-27 05:45:56]     "exeErrorCode": 0,
[2026-04-27 05:45:56]     "pilotErrorCode": 0,
[2026-04-27 05:45:56]  *** Listing of results directory ***
[2026-04-27 05:45:56] total 483572
[2026-04-27 05:45:56] -rw-r--r--. 1 boinc boinc    683926 Apr 26 17:53 pilot3.tar.gz
[2026-04-27 05:45:56] -rwx------. 1 boinc boinc     36322 Apr 26 17:56 runpilot2-wrapper.sh
[2026-04-27 05:45:56] -rw-r--r--. 1 boinc boinc      5631 Apr 26 17:59 queuedata.json
[2026-04-27 05:45:56] -rw-r--r--. 1 boinc boinc       100 Apr 27 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-27 05:45:56] -rwxr-xr-x. 1 boinc boinc      7986 Apr 27 00:02 run_atlas
[2026-04-27 05:45:56] -rw-r--r--. 1 boinc boinc       105 Apr 27 00:02 job.xml
[2026-04-27 05:45:56] -rw-r--r--. 2 boinc boinc 266168958 Apr 27 00:02 EVNT.49863712._000092.pool.root.1
[2026-04-27 05:45:56] drwxrwx--x. 2 boinc boinc        68 Apr 27 00:02 shared
[2026-04-27 05:45:56] -rw-r--r--. 2 boinc boinc    697418 Apr 27 00:02 input.tar.gz
[2026-04-27 05:45:56] -rw-r--r--. 1 boinc boinc      6307 Apr 27 00:02 init_data.xml
[2026-04-27 05:45:56] -rw-r--r--. 2 boinc boinc     15667 Apr 27 00:02 start_atlas.sh
[2026-04-27 05:45:56] -rw-r--r--. 1 boinc boinc         0 Apr 27 00:02 boinc_lockfile
[2026-04-27 05:45:56] -rw-r--r--. 1 boinc boinc      2575 Apr 27 00:02 pandaJob.out
[2026-04-27 05:45:56] -rw-------. 1 boinc boinc       415 Apr 27 00:09 workernode_map.json
[2026-04-27 05:45:56] -rw-------. 1 boinc boinc    997538 Apr 27 00:09 agis_schedconf.cvmfs.json
[2026-04-27 05:45:56] drwx------. 5 boinc boinc      4096 Apr 27 00:09 pilot3
[2026-04-27 05:45:56] -rw-------. 1 boinc boinc 220295223 Apr 27 05:43 HITS.49863714._001781.pool.root.1
[2026-04-27 05:45:56] -rw-r--r--. 1 boinc boinc       488 Apr 27 05:43 boinc_task_state.xml
[2026-04-27 05:45:56] -rw-------. 1 boinc boinc      1022 Apr 27 05:44 memory_monitor_summary.json
[2026-04-27 05:45:56] -rw-------. 1 boinc boinc   1509089 Apr 27 05:44 agis_ddmendpoints.agis.ALL.json
[2026-04-27 05:45:56] -rw-------. 1 boinc boinc    438332 Apr 27 05:44 log.49863714._001781.job.log.tgz.1
[2026-04-27 05:45:56] -rw-------. 1 boinc boinc      6346 Apr 27 05:44 heartbeat_new.json
[2026-04-27 05:45:56] -rw-------. 1 boinc boinc      6237 Apr 27 05:44 heartbeat.json
[2026-04-27 05:45:56] -rw-------. 1 boinc boinc        95 Apr 27 05:45 pilot_heartbeat.json
[2026-04-27 05:45:56] -rw-r--r--. 1 boinc boinc      8192 Apr 27 05:45 boinc_mmap_file
[2026-04-27 05:45:56] -rw-r--r--. 1 boinc boinc        28 Apr 27 05:45 wrapper_checkpoint.txt
[2026-04-27 05:45:56] -rw-------. 1 boinc boinc      4884 Apr 27 05:45 pilotlog.txt
[2026-04-27 05:45:56] -rw-------. 1 boinc boinc   1858801 Apr 27 05:45 log.49863714._001781.job.log.1
[2026-04-27 05:45:56] -rw-------. 1 boinc boinc       357 Apr 27 05:45 output.list
[2026-04-27 05:45:56] -rw-r--r--. 1 boinc boinc       410 Apr 27 05:45 runtime_log
[2026-04-27 05:45:56] -rw-------. 1 boinc boinc   2314240 Apr 27 05:45 result.tar.gz
[2026-04-27 05:45:56] -rw-r--r--. 1 boinc boinc      8455 Apr 27 05:45 runtime_log.err
[2026-04-27 05:45:56] -rw-------. 1 boinc boinc       656 Apr 27 05:45 35ac77b99c82.diag
[2026-04-27 05:45:56] -rw-r--r--. 1 boinc boinc     20633 Apr 27 05:45 stderr.txt
[2026-04-27 05:45:56] HITS file was successfully produced:
[2026-04-27 05:45:56] -rw-------. 1 boinc boinc 220295223 Apr 27 05:43 shared/HITS.pool.root.1
[2026-04-27 05:45:56]  *** Contents of shared directory: ***
[2026-04-27 05:45:56] total 478028
[2026-04-27 05:45:56] -rw-r--r--. 2 boinc boinc 266168958 Apr 27 00:02 ATLAS.root_0
[2026-04-27 05:45:56] -rw-r--r--. 2 boinc boinc    697418 Apr 27 00:02 input.tar.gz
[2026-04-27 05:45:56] -rw-r--r--. 2 boinc boinc     15667 Apr 27 00:02 start_atlas.sh
[2026-04-27 05:45:56] -rw-------. 1 boinc boinc 220295223 Apr 27 05:43 HITS.pool.root.1
[2026-04-27 05:45:56] -rw-------. 1 boinc boinc   2314240 Apr 27 05:45 result.tar.gz
05:45:58 (14237): run_atlas exited; CPU time 85013.207366
05:45:58 (14237): called boinc_finish(0)

</stderr_txt>
]]>

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