Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:54:25 (551079): wrapper (7.7.26015): starting
20:54:25 (551079): wrapper: running run_atlas (--nthreads 4)
[2026-04-26 20:54:25] Arguments: --nthreads 4
[2026-04-26 20:54:25] Threads: 4
[2026-04-26 20:54:25] Checking for CVMFS
[2026-04-26 20:54:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-26 20:54:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-26 20:54:25] Running cvmfs_config stat atlas.cern.ch
[2026-04-26 20:54:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-26 20:54:25] 2.9.2.0 520919 184 54976 158900 3 50 34766435 36864000 0 130560 0 110177 99.980 9391 26678 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-26 20:54:25] CVMFS is ok
[2026-04-26 20:54:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-26 20:54:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-26 20:54:25] Further information can be found at the LHC@home message board.
[2026-04-26 20:54:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-26 20:54:25] Checking for apptainer binary...
[2026-04-26 20:54:25] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-26 20:54:25] Running /usr/bin/apptainer --version
[2026-04-26 20:54:25] apptainer version 1.4.1-1.1
[2026-04-26 20:54:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-26 20:54:26] thA309
[2026-04-26 20:54:26] apptainer works
[2026-04-26 20:54:26] Set ATHENA_PROC_NUMBER=4
[2026-04-26 20:54:26] Set ATHENA_CORE_NUMBER=4
[2026-04-26 20:54:26] Starting ATLAS job with PandaID=7116128158
[2026-04-26 20:54:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-26 22:11:13]  *** The last 200 lines of the pilot log: ***
[2026-04-26 22:11:13] 2026-04-26 20:10:40,474 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-26 22:11:13] 2026-04-26 20:10:40,474 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-26 22:11:13] 2026-04-26 20:10:40,474 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-26 22:11:13] 2026-04-26 20:10:40,474 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-26 22:11:13] 2026-04-26 20:10:40,474 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-26 22:11:13] 2026-04-26 20:10:40,474 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-26 22:11:13] 2026-04-26 20:10:40,474 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-26 22:11:13] 2026-04-26 20:10:40,474 | INFO     | job 7116128158 has completed (purged errors)
[2026-04-26 22:11:13] 2026-04-26 20:10:40,474 | INFO     | overall cleanup function is called
[2026-04-26 22:11:13] 2026-04-26 20:10:41,481 | INFO     | --- collectZombieJob: --- 10, [559721]
[2026-04-26 22:11:13] 2026-04-26 20:10:41,481 | INFO     | zombie collector waiting for pid 559721
[2026-04-26 22:11:13] 2026-04-26 20:10:41,481 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-26 22:11:13] 2026-04-26 20:10:41,481 | INFO     | collected zombie processes
[2026-04-26 22:11:13] 2026-04-26 20:10:41,481 | INFO     | will attempt to kill all subprocesses of pid=559721
[2026-04-26 22:11:13] 2026-04-26 20:10:41,519 | INFO     | process IDs to be killed: [559721] (in reverse order)
[2026-04-26 22:11:13] 2026-04-26 20:10:41,555 | WARNING  | found no corresponding commands to process id(s)
[2026-04-26 22:11:13] 2026-04-26 20:10:41,555 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-26 22:11:13] 2026-04-26 20:10:41,557 | INFO     | did not find any defunct processes belonging to 559721
[2026-04-26 22:11:13] 2026-04-26 20:10:41,559 | INFO     | did not find any defunct processes belonging to 559721
[2026-04-26 22:11:13] 2026-04-26 20:10:41,559 | INFO     | Ready for new job
[2026-04-26 22:11:13] 2026-04-26 20:10:41,560 | INFO     | ***************************************
[2026-04-26 22:11:13] 2026-04-26 20:10:41,560 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-26 22:11:13] 2026-04-26 20:10:41,560 | INFO     | ***************************************
[2026-04-26 22:11:13] 2026-04-26 20:10:41,560 | INFO     | 
[2026-04-26 22:11:13] 2026-04-26 20:10:41,560 | INFO     | architecture information:
[2026-04-26 22:11:13] 2026-04-26 20:10:41,560 | INFO     | executing command: cat /etc/os-release
[2026-04-26 22:11:13] 2026-04-26 20:10:41,576 | INFO     | cat /etc/os-release:
[2026-04-26 22:11:13] NAME="CentOS Linux"
[2026-04-26 22:11:13] VERSION="7 (Core)"
[2026-04-26 22:11:13] ID="centos"
[2026-04-26 22:11:13] ID_LIKE="rhel fedora"
[2026-04-26 22:11:13] VERSION_ID="7"
[2026-04-26 22:11:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-26 22:11:13] ANSI_COLOR="0;31"
[2026-04-26 22:11:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-26 22:11:13] HOME_URL="https://www.centos.org/"
[2026-04-26 22:11:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-26 22:11:13] 
[2026-04-26 22:11:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-26 22:11:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-26 22:11:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-26 22:11:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-26 22:11:13] 
[2026-04-26 22:11:13] 2026-04-26 20:10:41,576 | INFO     | ***************************************
[2026-04-26 22:11:13] 2026-04-26 20:10:42,079 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-26 22:11:13] 2026-04-26 20:10:42,097 | INFO     | sufficient remaining disk space (225436499968 B)
[2026-04-26 22:11:13] 2026-04-26 20:10:42,097 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-26 22:11:13] 2026-04-26 20:10:42,097 | INFO     | current server update state: UPDATING_FINAL
[2026-04-26 22:11:13] 2026-04-26 20:10:42,097 | INFO     | update_server=False
[2026-04-26 22:11:13] 2026-04-26 20:10:42,097 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-26 22:11:13] 2026-04-26 20:10:42,098 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-26 22:11:13] 2026-04-26 20:10:42,098 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-26 22:11:13] 2026-04-26 20:10:42,332 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-26 22:11:13] 2026-04-26 20:10:42,332 | INFO     | aborting loop
[2026-04-26 22:11:13] 2026-04-26 20:10:43,103 | INFO     | [job] queue monitor thread has finished
[2026-04-26 22:11:13] 2026-04-26 20:10:43,103 | INFO     | [job] retrieve thread has finished
[2026-04-26 22:11:13] 2026-04-26 20:10:43,172 | INFO     | [payload] validate_pre thread has finished
[2026-04-26 22:11:13] 2026-04-26 20:10:43,179 | INFO     | all data control threads have been joined
[2026-04-26 22:11:13] 2026-04-26 20:10:43,262 | INFO     | [data] copytool_in thread has finished
[2026-04-26 22:11:13] 2026-04-26 20:10:43,278 | INFO     | all payload control threads have been joined
[2026-04-26 22:11:13] 2026-04-26 20:10:43,338 | INFO     | [job] job monitor thread has finished
[2026-04-26 22:11:13] 2026-04-26 20:10:43,513 | INFO     | all job control threads have been joined
[2026-04-26 22:11:13] 2026-04-26 20:10:43,588 | INFO     | [payload] validate_post thread has finished
[2026-04-26 22:11:13] 2026-04-26 20:10:44,104 | INFO     | [data] copytool_out thread has finished
[2026-04-26 22:11:13] 2026-04-26 20:10:44,184 | INFO     | [data] control thread has finished
[2026-04-26 22:11:13] 2026-04-26 20:10:44,284 | INFO     | [payload] control thread has finished
[2026-04-26 22:11:13] 2026-04-26 20:10:44,463 | INFO     | [job] validate thread has finished
[2026-04-26 22:11:13] 2026-04-26 20:10:44,519 | INFO     | [job] control thread has finished
[2026-04-26 22:11:13] 2026-04-26 20:10:44,546 | INFO     | [payload] execute_payloads thread has finished
[2026-04-26 22:11:13] 2026-04-26 20:10:44,600 | INFO     | [job] create_data_payload thread has finished
[2026-04-26 22:11:13] 2026-04-26 20:10:44,640 | INFO     | [payload] failed_post thread has finished
[2026-04-26 22:11:13] 2026-04-26 20:10:44,772 | INFO     | [monitor] cgroup control has ended
[2026-04-26 22:11:13] 2026-04-26 20:10:44,839 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-26 22:11:13] 2026-04-26 20:10:48,846 | INFO     | [data] queue_monitor thread has finished
[2026-04-26 22:11:13] 2026-04-26 20:10:52,526 | INFO     | job.realtimelogging is not enabled
[2026-04-26 22:11:13] 2026-04-26 20:10:53,531 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-26 22:11:13] 2026-04-26 20:10:53,837 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139859205154624)>', '<ExcThread(monitor, started 139858261554944)>']
[2026-04-26 22:11:13] 2026-04-26 20:10:58,862 | INFO     | all workflow threads have been joined
[2026-04-26 22:11:13] 2026-04-26 20:10:58,863 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-26 22:11:13] 2026-04-26 20:10:58,863 | INFO     | traces error code: 0
[2026-04-26 22:11:13] 2026-04-26 20:10:58,863 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-26 22:11:13] 2026-04-26 20:11:12,806 | INFO     | PID=555204 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-26 22:11:13] 2026-04-26 20:11:12,807 | INFO     | found 0 job(s) in 20 queues
[2026-04-26 22:11:13] 2026-04-26 20:11:12,807 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-26 22:11:13] 2026-04-26 20:11:12,807 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-26 22:11:13] 2026-04-26 20:11:12,807 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-26 22:11:13] 2026-04-26 20:11:12,807 | INFO     | [monitor] control thread has ended
[2026-04-26 22:11:13] 2026-04-26 20:11:12,885 [wrapper] ==== pilot stdout END ====
[2026-04-26 22:11:13] 2026-04-26 20:11:12,890 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-26 22:11:13] 2026-04-26 20:11:12,894 [wrapper] pilotpid: 555204
[2026-04-26 22:11:13] 2026-04-26 20:11:12,899 [wrapper] Pilot exit status: 0
[2026-04-26 22:11:13] 2026-04-26 20:11:12,911 [wrapper] pandaids: 7116128158
[2026-04-26 22:11:13] 2026-04-26 20:11:12,935 [wrapper] cleanup supervisor_pilot  566311 555205
[2026-04-26 22:11:13] 2026-04-26 20:11:12,939 [wrapper] Test setup, not cleaning
[2026-04-26 22:11:13] 2026-04-26 20:11:12,943 [wrapper] apfmon messages muted
[2026-04-26 22:11:13] 2026-04-26 20:11:12,947 [wrapper] ==== wrapper stdout END ====
[2026-04-26 22:11:13] 2026-04-26 20:11:12,951 [wrapper] ==== wrapper stderr END ====
[2026-04-26 22:11:13]  *** Error codes and diagnostics ***
[2026-04-26 22:11:13]     "exeErrorCode": 0,
[2026-04-26 22:11:13]     "pilotErrorCode": 0,
[2026-04-26 22:11:13]  *** Listing of results directory ***
[2026-04-26 22:11:13] total 458108
[2026-04-26 22:11:13] -rw-r--r-- 1 boinc boinc      5631 Apr 26 17:53 queuedata.json
[2026-04-26 22:11:13] -rw-r--r-- 1 boinc boinc    683926 Apr 26 17:53 pilot3.tar.gz
[2026-04-26 22:11:13] -rwx------ 1 boinc boinc     36322 Apr 26 17:53 runpilot2-wrapper.sh
[2026-04-26 22:11:13] -rw-r--r-- 1 boinc boinc       100 Apr 26 20:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-26 22:11:13] -rwxr-xr-x 1 boinc boinc      7986 Apr 26 20:54 run_atlas
[2026-04-26 22:11:13] -rw-r--r-- 1 boinc boinc       105 Apr 26 20:54 job.xml
[2026-04-26 22:11:13] -rw-r--r-- 2 boinc boinc 274730198 Apr 26 20:54 EVNT.49912796._000003.pool.root.1
[2026-04-26 22:11:13] -rw-r--r-- 2 boinc boinc    697433 Apr 26 20:54 input.tar.gz
[2026-04-26 22:11:13] -rw-r--r-- 2 boinc boinc     15667 Apr 26 20:54 start_atlas.sh
[2026-04-26 22:11:13] drwxrwx--x 2 boinc boinc      4096 Apr 26 20:54 shared
[2026-04-26 22:11:13] -rw-r--r-- 1 boinc boinc         0 Apr 26 20:54 boinc_setup_complete
[2026-04-26 22:11:13] -rw-r--r-- 1 boinc boinc      6292 Apr 26 20:54 init_data.xml
[2026-04-26 22:11:13] -rw-r--r-- 1 boinc boinc         0 Apr 26 20:54 boinc_lockfile
[2026-04-26 22:11:13] -rw-r--r-- 1 boinc boinc      2675 Apr 26 20:54 pandaJob.out
[2026-04-26 22:11:13] -rw------- 1 boinc boinc    997530 Apr 26 20:54 agis_schedconf.cvmfs.json
[2026-04-26 22:11:13] -rw------- 1 boinc boinc   1509089 Apr 26 20:54 agis_ddmendpoints.agis.ALL.json
[2026-04-26 22:11:13] -rw------- 1 boinc boinc       427 Apr 26 20:54 workernode_map.json
[2026-04-26 22:11:13] drwx------ 5 boinc boinc      4096 Apr 26 20:54 pilot3
[2026-04-26 22:11:13] -rw------- 1 boinc boinc 188871183 Apr 26 22:10 HITS.49912801._000063.pool.root.1
[2026-04-26 22:11:13] -rw-r--r-- 1 boinc boinc       487 Apr 26 22:10 boinc_task_state.xml
[2026-04-26 22:11:13] -rw------- 1 boinc boinc      1025 Apr 26 22:10 memory_monitor_summary.json
[2026-04-26 22:11:13] -rw------- 1 boinc boinc    243602 Apr 26 22:10 log.49912801._000063.job.log.tgz.1
[2026-04-26 22:11:13] -rw------- 1 boinc boinc      6325 Apr 26 22:10 heartbeat_new.json
[2026-04-26 22:11:13] -rw------- 1 boinc boinc      6216 Apr 26 22:10 heartbeat.json
[2026-04-26 22:11:13] -rw-r--r-- 1 boinc boinc      8192 Apr 26 22:11 boinc_mmap_file
[2026-04-26 22:11:13] -rw-r--r-- 1 boinc boinc        27 Apr 26 22:11 wrapper_checkpoint.txt
[2026-04-26 22:11:13] -rw------- 1 boinc boinc       746 Apr 26 22:11 pilotlog.txt
[2026-04-26 22:11:13] -rw------- 1 boinc boinc        95 Apr 26 22:11 pilot_heartbeat.json
[2026-04-26 22:11:13] -rw------- 1 boinc boinc    449844 Apr 26 22:11 log.49912801._000063.job.log.1
[2026-04-26 22:11:13] -rw------- 1 boinc boinc       357 Apr 26 22:11 output.list
[2026-04-26 22:11:13] -rw-r--r-- 1 boinc boinc       410 Apr 26 22:11 runtime_log
[2026-04-26 22:11:13] -rw------- 1 boinc boinc    706560 Apr 26 22:11 result.tar.gz
[2026-04-26 22:11:13] -rw-r--r-- 1 boinc boinc      8519 Apr 26 22:11 runtime_log.err
[2026-04-26 22:11:13] -rw------- 1 boinc boinc       657 Apr 26 22:11 350be1a2a992.diag
[2026-04-26 22:11:13] -rw-r--r-- 1 boinc boinc     11384 Apr 26 22:11 stderr.txt
[2026-04-26 22:11:13] HITS file was successfully produced:
[2026-04-26 22:11:13] -rw------- 1 boinc boinc 188871183 Apr 26 22:10 shared/HITS.pool.root.1
[2026-04-26 22:11:13]  *** Contents of shared directory: ***
[2026-04-26 22:11:13] total 454140
[2026-04-26 22:11:13] -rw-r--r-- 2 boinc boinc 274730198 Apr 26 20:54 ATLAS.root_0
[2026-04-26 22:11:13] -rw-r--r-- 2 boinc boinc    697433 Apr 26 20:54 input.tar.gz
[2026-04-26 22:11:13] -rw-r--r-- 2 boinc boinc     15667 Apr 26 20:54 start_atlas.sh
[2026-04-26 22:11:13] -rw------- 1 boinc boinc 188871183 Apr 26 22:10 HITS.pool.root.1
[2026-04-26 22:11:13] -rw------- 1 boinc boinc    706560 Apr 26 22:11 result.tar.gz
22:11:14 (551079): run_atlas exited; CPU time 16209.657060
22:11:14 (551079): called boinc_finish(0)

</stderr_txt>
]]>

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