Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:12:44 (3978562): wrapper (7.7.26015): starting
08:12:44 (3978562): wrapper: running run_atlas (--nthreads 4)
[2026-04-28 08:12:44] Arguments: --nthreads 4
[2026-04-28 08:12:44] Threads: 4
[2026-04-28 08:12:44] Checking for CVMFS
[2026-04-28 08:12:44] No cvmfs_config command found, will try listing directly
[2026-04-28 08:12:44] CVMFS is ok
[2026-04-28 08:12:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-28 08:12:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-28 08:12:44] Further information can be found at the LHC@home message board.
[2026-04-28 08:12:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-28 08:12:44] Checking for apptainer binary...
[2026-04-28 08:12:44] which: no apptainer in ((null))
[2026-04-28 08:12:44] apptainer is not installed, using version from CVMFS
[2026-04-28 08:12:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-28 08:12:44] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot96/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2026-04-28 08:12:44] apptainer works
[2026-04-28 08:12:44] Set ATHENA_PROC_NUMBER=4
[2026-04-28 08:12:44] Set ATHENA_CORE_NUMBER=4
[2026-04-28 08:12:44] Starting ATLAS job with PandaID=7116116829
[2026-04-28 08:12:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot96/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-28 11:25:52]  *** The last 200 lines of the pilot log: ***
[2026-04-28 11:25:52] 2026-04-28 09:22:50,849 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-28 11:25:52] 2026-04-28 09:22:50,906 | INFO     | job 7116116829 has state=finished
[2026-04-28 11:25:52] 2026-04-28 09:22:50,906 | INFO     | preparing for final server update for job 7116116829 in state='finished'
[2026-04-28 11:25:52] 2026-04-28 09:22:50,906 | INFO     | reading metadata from: /var/lib/boinc/var/slot96/slots/1/PanDA_Pilot-7116116829/jobReport.json
[2026-04-28 11:25:52] 2026-04-28 09:22:50,909 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot96/slots/1/workernode_map.json
[2026-04-28 11:25:52] 2026-04-28 09:22:50,909 | INFO     | this job has now completed (state=finished)
[2026-04-28 11:25:52] 2026-04-28 09:22:50,909 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-28 11:25:52] 2026-04-28 09:22:50,909 | INFO     | log transfer has been attempted: DONE
[2026-04-28 11:25:52] 2026-04-28 09:22:50,909 | INFO     | job 7116116829 has finished - writing final server update
[2026-04-28 11:25:52] 2026-04-28 09:22:50,910 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_270184/.job.ad'
[2026-04-28 11:25:52] 2026-04-28 09:22:50,910 | INFO     | total number of processed events: 400 (read)
[2026-04-28 11:25:52] 2026-04-28 09:22:50,934 | INFO     | using path: /var/lib/boinc/var/slot96/slots/1/PanDA_Pilot-7116116829/memory_monitor_summary.json (trf name=prmon)
[2026-04-28 11:25:52] 2026-04-28 09:22:50,935 | INFO     | extracted standard info from prmon json
[2026-04-28 11:25:52] 2026-04-28 09:22:50,935 | INFO     | extracted standard memory fields from prmon json
[2026-04-28 11:25:52] 2026-04-28 09:22:50,935 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-28 11:25:52] 2026-04-28 09:22:50,935 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-28 11:25:52] 2026-04-28 09:22:50,939 | INFO     | fitting pss+swap vs Time
[2026-04-28 11:25:52] 2026-04-28 09:22:50,939 | INFO     | sum of square deviations: 1995283922.5
[2026-04-28 11:25:52] 2026-04-28 09:22:50,940 | INFO     | sum of deviations: 16249616790.500002
[2026-04-28 11:25:52] 2026-04-28 09:22:50,941 | INFO     | mean x (centered): 0.0
[2026-04-28 11:25:52] 2026-04-28 09:22:50,941 | INFO     | mean y: 2342653.059139785
[2026-04-28 11:25:52] 2026-04-28 09:22:50,941 | INFO     | intersect: 2342653.059139785
[2026-04-28 11:25:52] 2026-04-28 09:22:50,941 | INFO     | chi2: 1.3469973573185927
[2026-04-28 11:25:52] 2026-04-28 09:22:50,942 | INFO     | sum of square deviations: 1838657730.0
[2026-04-28 11:25:52] 2026-04-28 09:22:50,943 | INFO     | sum of deviations: 15712646082.0
[2026-04-28 11:25:52] 2026-04-28 09:22:50,943 | INFO     | mean x (centered): 0.0
[2026-04-28 11:25:52] 2026-04-28 09:22:50,943 | INFO     | mean y: 2342130.635359116
[2026-04-28 11:25:52] 2026-04-28 09:22:50,943 | INFO     | intersect: 2342130.635359116
[2026-04-28 11:25:52] 2026-04-28 09:22:50,943 | INFO     | chi2: 1.3479307802480727
[2026-04-28 11:25:52] 2026-04-28 09:22:50,943 | INFO     | current chi2=1.3479307802480727 (change=-0.06929656724331498 %)
[2026-04-28 11:25:52] 2026-04-28 09:22:50,943 | INFO     | right removable region: 180
[2026-04-28 11:25:52] 2026-04-28 09:22:50,944 | INFO     | sum of square deviations: 1838657730.0
[2026-04-28 11:25:52] 2026-04-28 09:22:50,945 | INFO     | sum of deviations: -8839208049.999998
[2026-04-28 11:25:52] 2026-04-28 09:22:50,945 | INFO     | mean x (centered): 0.0
[2026-04-28 11:25:52] 2026-04-28 09:22:50,945 | INFO     | mean y: 2366774.9281767956
[2026-04-28 11:25:52] 2026-04-28 09:22:50,945 | INFO     | intersect: 2366774.9281767956
[2026-04-28 11:25:52] 2026-04-28 09:22:50,946 | INFO     | chi2: 0.020159213509067665
[2026-04-28 11:25:52] 2026-04-28 09:22:50,946 | INFO     | current chi2=0.020159213509067665 (change=98.50339620938844 %)
[2026-04-28 11:25:52] 2026-04-28 09:22:50,946 | INFO     | sum of square deviations: 1690450300.0
[2026-04-28 11:25:52] 2026-04-28 09:22:50,947 | INFO     | sum of deviations: -8439009559.000001
[2026-04-28 11:25:52] 2026-04-28 09:22:50,947 | INFO     | mean x (centered): 0.0
[2026-04-28 11:25:52] 2026-04-28 09:22:50,947 | INFO     | mean y: 2366337.7954545454
[2026-04-28 11:25:52] 2026-04-28 09:22:50,947 | INFO     | intersect: 2366337.7954545454
[2026-04-28 11:25:52] 2026-04-28 09:22:50,948 | INFO     | chi2: 0.016590399381528162
[2026-04-28 11:25:52] 2026-04-28 09:22:50,948 | INFO     | current chi2=0.016590399381528162 (change=17.703141672338763 %)
[2026-04-28 11:25:52] 2026-04-28 09:22:50,948 | INFO     | left removable region: 10
[2026-04-28 11:25:52] 2026-04-28 09:22:50,948 | INFO     | sum of square deviations: 1523386702.5
[2026-04-28 11:25:52] 2026-04-28 09:22:50,949 | INFO     | sum of deviations: -8258043390.5
[2026-04-28 11:25:52] 2026-04-28 09:22:50,949 | INFO     | mean x (centered): 0.0
[2026-04-28 11:25:52] 2026-04-28 09:22:50,949 | INFO     | mean y: 2366537.5823529414
[2026-04-28 11:25:52] 2026-04-28 09:22:50,949 | INFO     | intersect: 2366537.5823529414
[2026-04-28 11:25:52] 2026-04-28 09:22:50,950 | INFO     | chi2: 0.016064233494994452
[2026-04-28 11:25:52] 2026-04-28 09:22:50,950 | INFO     | current memory leak: -5.42 B/s (using 170 data points, chi2=0.02)
[2026-04-28 11:25:52] 2026-04-28 09:22:50,950 | INFO     | could have reported an average CPU frequency of 2692 MHz (10 samples)
[2026-04-28 11:25:52] 2026-04-28 09:22:50,950 | INFO     | ..............................
[2026-04-28 11:25:52] 2026-04-28 09:22:50,950 | INFO     | . Timing measurements:
[2026-04-28 11:25:52] 2026-04-28 09:22:50,951 | INFO     | . get job = 0 s
[2026-04-28 11:25:52] 2026-04-28 09:22:50,951 | INFO     | . initial setup = 9 s
[2026-04-28 11:25:52] 2026-04-28 09:22:50,951 | INFO     | . payload setup = 16 s
[2026-04-28 11:25:52] 2026-04-28 09:22:50,951 | INFO     | . stage-in = 0 s
[2026-04-28 11:25:52] 2026-04-28 09:22:50,951 | INFO     | . payload execution = 11342 s
[2026-04-28 11:25:52] 2026-04-28 09:22:50,951 | INFO     | . stage-out = 1 s
[2026-04-28 11:25:52] 2026-04-28 09:22:50,951 | INFO     | . log creation = 0 s
[2026-04-28 11:25:52] 2026-04-28 09:22:50,951 | INFO     | ..............................
[2026-04-28 11:25:52] 2026-04-28 09:22:51,045 | INFO     | 
[2026-04-28 11:25:52] 2026-04-28 09:22:51,046 | INFO     | job summary report
[2026-04-28 11:25:52] 2026-04-28 09:22:51,046 | INFO     | --------------------------------------------------
[2026-04-28 11:25:52] 2026-04-28 09:22:51,046 | INFO     | PanDA job id: 7116116829
[2026-04-28 11:25:52] 2026-04-28 09:22:51,046 | INFO     | task id: 49860708
[2026-04-28 11:25:52] 2026-04-28 09:22:51,046 | INFO     | errors: (none)
[2026-04-28 11:25:52] 2026-04-28 09:22:51,046 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-28 11:25:52] 2026-04-28 09:22:51,046 | INFO     | pilot state: finished 
[2026-04-28 11:25:52] 2026-04-28 09:22:51,047 | INFO     | transexitcode: 0
[2026-04-28 11:25:52] 2026-04-28 09:22:51,047 | INFO     | exeerrorcode: 0
[2026-04-28 11:25:52] 2026-04-28 09:22:51,047 | INFO     | exeerrordiag: 
[2026-04-28 11:25:52] 2026-04-28 09:22:51,047 | INFO     | exitcode: 0
[2026-04-28 11:25:52] 2026-04-28 09:22:51,047 | INFO     | exitmsg: OK
[2026-04-28 11:25:52] 2026-04-28 09:22:51,047 | INFO     | cpuconsumptiontime: 42960 s
[2026-04-28 11:25:52] 2026-04-28 09:22:51,047 | INFO     | nevents: 400
[2026-04-28 11:25:52] 2026-04-28 09:22:51,047 | INFO     | neventsw: 0
[2026-04-28 11:25:52] 2026-04-28 09:22:51,047 | INFO     | pid: 3988278
[2026-04-28 11:25:52] 2026-04-28 09:22:51,047 | INFO     | pgrp: 3988278
[2026-04-28 11:25:52] 2026-04-28 09:22:51,047 | INFO     | corecount: 4
[2026-04-28 11:25:52] 2026-04-28 09:22:51,047 | INFO     | event service: False
[2026-04-28 11:25:52] 2026-04-28 09:22:51,047 | INFO     | sizes: {0: 2280631, 1: 2282460, 12: 2282460, 11363: 2312450, 11365: 2321470, 11366: 2321526, 11367: 2321848}
[2026-04-28 11:25:52] 2026-04-28 09:22:51,048 | INFO     | --------------------------------------------------
[2026-04-28 11:25:52] 2026-04-28 09:22:51,048 | INFO     | 
[2026-04-28 11:25:52] 2026-04-28 09:22:51,048 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot96/slots/1
[2026-04-28 11:25:52] 2026-04-28 09:22:51,080 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-28 11:25:52] 2026-04-28 09:22:51,081 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-28 11:25:52] 2026-04-28 09:22:51,081 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-28 11:25:52] 2026-04-28 09:22:51,081 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-28 11:25:52] 2026-04-28 09:22:51,081 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-28 11:25:52] 2026-04-28 09:22:51,081 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-28 11:25:52] 2026-04-28 09:22:51,081 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-28 11:25:52] 2026-04-28 09:22:51,081 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-28 11:25:52] 2026-04-28 09:22:51,082 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-28 11:25:52] 2026-04-28 09:22:51,082 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-28 11:25:52] 2026-04-28 09:22:51,082 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-28 11:25:52] 2026-04-28 09:22:51,082 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-28 11:25:52] 2026-04-28 09:22:51,082 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-28 11:25:52] 2026-04-28 09:22:51,082 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-28 11:25:52] 2026-04-28 09:22:51,082 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-28 11:25:52] 2026-04-28 09:22:51,082 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-28 11:25:52] 2026-04-28 09:22:51,082 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-28 11:25:52] 2026-04-28 09:22:51,082 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-28 11:25:52] 2026-04-28 09:22:51,082 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-28 11:25:52] 2026-04-28 09:22:51,083 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-28 11:25:52] 2026-04-28 09:22:51,083 | INFO     | job 7116116829 has completed (purged errors)
[2026-04-28 11:25:52] 2026-04-28 09:22:51,083 | INFO     | overall cleanup function is called
[2026-04-28 11:25:52] 2026-04-28 09:22:52,091 | INFO     | --- collectZombieJob: --- 10, [3988278]
[2026-04-28 11:25:52] 2026-04-28 09:22:52,092 | INFO     | zombie collector waiting for pid 3988278
[2026-04-28 11:25:52] 2026-04-28 09:22:52,092 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-28 11:25:52] 2026-04-28 09:22:52,092 | INFO     | collected zombie processes
[2026-04-28 11:25:52] 2026-04-28 09:22:52,092 | INFO     | will attempt to kill all subprocesses of pid=3988278
[2026-04-28 11:25:52] 2026-04-28 09:22:52,459 | INFO     | PID=3982999 has CPU usage=26.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-28 11:25:52] 2026-04-28 09:22:52,459 | INFO     | .. there are 23 such processes running
[2026-04-28 11:25:52] 2026-04-28 09:22:52,942 | INFO     | process IDs to be killed: [3988278] (in reverse order)
[2026-04-28 11:25:52] 2026-04-28 09:22:53,293 | WARNING  | found no corresponding commands to process id(s)
[2026-04-28 11:25:52] 2026-04-28 09:22:53,293 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-28 11:25:52] 2026-04-28 09:22:53,325 | INFO     | did not find any defunct processes belonging to 3988278
[2026-04-28 11:25:52] 2026-04-28 09:22:53,352 | INFO     | did not find any defunct processes belonging to 3988278
[2026-04-28 11:25:52] 2026-04-28 09:22:53,353 | INFO     | Ready for new job
[2026-04-28 11:25:52] 2026-04-28 09:22:53,355 | INFO     | ***************************************
[2026-04-28 11:25:52] 2026-04-28 09:22:53,355 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-28 11:25:52] 2026-04-28 09:22:53,355 | INFO     | ***************************************
[2026-04-28 11:25:52] 2026-04-28 09:22:53,355 | INFO     | 
[2026-04-28 11:25:52] 2026-04-28 09:22:53,364 | INFO     | architecture information:
[2026-04-28 11:25:52] 2026-04-28 09:22:53,365 | INFO     | executing command: cat /etc/os-release
[2026-04-28 11:25:52] 2026-04-28 09:22:53,390 | INFO     | cat /etc/os-release:
[2026-04-28 11:25:52] NAME="CentOS Linux"
[2026-04-28 11:25:52] VERSION="7 (Core)"
[2026-04-28 11:25:52] ID="centos"
[2026-04-28 11:25:52] ID_LIKE="rhel fedora"
[2026-04-28 11:25:52] VERSION_ID="7"
[2026-04-28 11:25:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-28 11:25:52] ANSI_COLOR="0;31"
[2026-04-28 11:25:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-28 11:25:52] HOME_URL="https://www.centos.org/"
[2026-04-28 11:25:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-28 11:25:52] 
[2026-04-28 11:25:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-28 11:25:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-28 11:25:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-28 11:25:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-28 11:25:52] 
[2026-04-28 11:25:52] 2026-04-28 09:22:53,390 | INFO     | ***************************************
[2026-04-28 11:25:52] 2026-04-28 09:22:53,893 | INFO     | executing command: df -mP /var/lib/boinc/var/slot96/slots/1
[2026-04-28 11:25:52] 2026-04-28 09:22:53,920 | INFO     | sufficient remaining disk space (21495808000 B)
[2026-04-28 11:25:52] 2026-04-28 09:22:53,920 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-28 11:25:52] 2026-04-28 09:22:53,920 | INFO     | current server update state: UPDATING_FINAL
[2026-04-28 11:25:52] 2026-04-28 09:22:53,920 | INFO     | update_server=False
[2026-04-28 11:25:52] 2026-04-28 09:22:53,921 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-28 11:25:52] 2026-04-28 09:22:54,207 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-28 11:25:52] 2026-04-28 09:22:54,338 | INFO     | all job control threads have been joined
[2026-04-28 11:25:52] 2026-04-28 09:22:54,356 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-28 11:25:52] 2026-04-28 09:22:54,357 | INFO     | aborting loop
[2026-04-28 11:25:52] 2026-04-28 09:22:54,390 | INFO     | all data control threads have been joined
[2026-04-28 11:25:52] 2026-04-28 09:22:54,926 | INFO     | [job] retrieve thread has finished
[2026-04-28 11:25:52] 2026-04-28 09:22:54,935 | INFO     | [job] validate thread has finished
[2026-04-28 11:25:52] 2026-04-28 09:22:55,188 | INFO     | [payload] execute_payloads thread has finished
[2026-04-28 11:25:52] 2026-04-28 09:22:55,334 | INFO     | all payload control threads have been joined
[2026-04-28 11:25:52] 2026-04-28 09:22:55,343 | INFO     | [job] control thread has finished
[2026-04-28 11:25:52] 2026-04-28 09:22:55,362 | INFO     | [job] job monitor thread has finished
[2026-04-28 11:25:52] 2026-04-28 09:22:55,396 | INFO     | [data] control thread has finished
[2026-04-28 11:25:52] 2026-04-28 09:22:55,497 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-28 11:25:52] 2026-04-28 09:22:55,654 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-28 11:25:52] 2026-04-28 09:22:55,657 | INFO     | [payload] validate_pre thread has finished
[2026-04-28 11:25:52] 2026-04-28 09:22:55,766 | INFO     | [payload] validate_post thread has finished
[2026-04-28 11:25:52] 2026-04-28 09:22:56,056 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-28 11:25:52] 2026-04-28 09:22:56,077 | INFO     | [data] copytool_in thread has finished
[2026-04-28 11:25:52] 2026-04-28 09:22:56,214 | INFO     | [data] copytool_out thread has finished
[2026-04-28 11:25:52] 2026-04-28 09:22:56,257 | INFO     | [payload] failed_post thread has finished
[2026-04-28 11:25:52] 2026-04-28 09:22:56,266 | INFO     | [job] create_data_payload thread has finished
[2026-04-28 11:25:52] 2026-04-28 09:22:56,339 | INFO     | [payload] control thread has finished
[2026-04-28 11:25:52] 2026-04-28 09:22:57,061 | INFO     | [job] queue monitor thread has finished
[2026-04-28 11:25:52] 2026-04-28 09:22:59,660 | INFO     | [data] queue_monitor thread has finished
[2026-04-28 11:25:52] 2026-04-28 09:23:25,443 | INFO     | PID=3982999 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-28 11:25:52] 2026-04-28 09:23:25,445 | INFO     | .. there are 23 such processes running
[2026-04-28 11:25:52] 2026-04-28 09:23:25,446 | INFO     | found 0 job(s) in 20 queues
[2026-04-28 11:25:52] 2026-04-28 09:23:25,446 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-28 11:25:52] 2026-04-28 09:23:25,446 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-28 11:25:52] 2026-04-28 09:23:30,597 | INFO     | [monitor] cgroup control has ended
[2026-04-28 11:25:52] 2026-04-28 09:23:32,353 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23244261377856)>', '<ExcThread(monitor, started 23243947742976)>']
[2026-04-28 11:25:52] 2026-04-28 09:23:32,481 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-28 11:25:52] 2026-04-28 09:23:32,481 | INFO     | [monitor] control thread has ended
[2026-04-28 11:25:52] 2026-04-28 09:23:37,378 | INFO     | all workflow threads have been joined
[2026-04-28 11:25:52] 2026-04-28 09:23:37,379 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-28 11:25:52] 2026-04-28 09:23:37,379 | INFO     | traces error code: 0
[2026-04-28 11:25:52] 2026-04-28 09:23:37,379 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-28 11:25:52] 2026-04-28 09:23:37,579 [wrapper] ==== pilot stdout END ====
[2026-04-28 11:25:52] 2026-04-28 09:23:37,583 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-28 11:25:52] 2026-04-28 09:23:37,588 [wrapper] pilotpid: 3982999
[2026-04-28 11:25:52] 2026-04-28 09:23:37,591 [wrapper] Pilot exit status: 0
[2026-04-28 11:25:52] 2026-04-28 09:23:37,612 [wrapper] pandaids: 7116116829
[2026-04-28 11:25:52] 2026-04-28 09:23:37,833 [wrapper] cleanup supervisor_pilot  205706 3983000
[2026-04-28 11:25:52] 2026-04-28 09:23:37,838 [wrapper] Test setup, not cleaning
[2026-04-28 11:25:52] 2026-04-28 09:23:37,842 [wrapper] apfmon messages muted
[2026-04-28 11:25:52] 2026-04-28 09:23:37,846 [wrapper] ==== wrapper stdout END ====
[2026-04-28 11:25:52] 2026-04-28 09:23:37,850 [wrapper] ==== wrapper stderr END ====
[2026-04-28 11:25:52]  *** Error codes and diagnostics ***
[2026-04-28 11:25:52]     "exeErrorCode": 0,
[2026-04-28 11:25:52]     "pilotErrorCode": 0,
[2026-04-28 11:25:52]  *** Listing of results directory ***
[2026-04-28 11:25:52] total 472132
[2026-04-28 11:25:52] -rw-r--r--. 1 boinc boinc    683926 Apr 26 16:58 pilot3.tar.gz
[2026-04-28 11:25:52] -rwx------. 1 boinc boinc     36322 Apr 26 17:01 runpilot2-wrapper.sh
[2026-04-28 11:25:52] -rw-r--r--. 1 boinc boinc      5631 Apr 26 17:03 queuedata.json
[2026-04-28 11:25:52] -rw-r--r--. 1 boinc boinc       100 Apr 28 08:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-28 11:25:52] -rwxr-xr-x. 1 boinc boinc      7986 Apr 28 08:12 run_atlas
[2026-04-28 11:25:52] -rw-r--r--. 1 boinc boinc       105 Apr 28 08:12 job.xml
[2026-04-28 11:25:52] -rw-r--r--. 1 boinc boinc      6538 Apr 28 08:12 init_data.xml
[2026-04-28 11:25:52] -rw-r--r--. 2 boinc boinc 297775093 Apr 28 08:12 EVNT.48752390._000005.pool.root.1
[2026-04-28 11:25:52] -rw-r--r--. 2 boinc boinc     15667 Apr 28 08:12 start_atlas.sh
[2026-04-28 11:25:52] drwxrwx--x. 2 boinc boinc      4096 Apr 28 08:12 shared
[2026-04-28 11:25:52] -rw-r--r--. 2 boinc boinc    697389 Apr 28 08:12 input.tar.gz
[2026-04-28 11:25:52] -rw-r--r--. 1 boinc boinc         0 Apr 28 08:12 boinc_lockfile
[2026-04-28 11:25:52] -rw-r--r--. 1 boinc boinc      2518 Apr 28 08:12 pandaJob.out
[2026-04-28 11:25:52] -rw-------. 1 boinc boinc    994482 Apr 28 08:13 agis_schedconf.cvmfs.json
[2026-04-28 11:25:52] -rw-------. 1 boinc boinc       442 Apr 28 08:13 workernode_map.json
[2026-04-28 11:25:52] drwx------. 5 boinc boinc      4096 Apr 28 08:13 pilot3
[2026-04-28 11:25:52] -rw-------. 1 boinc boinc 178819465 Apr 28 11:22 HITS.49860708._000107.pool.root.1
[2026-04-28 11:25:52] -rw-r--r--. 1 boinc boinc       487 Apr 28 11:22 boinc_task_state.xml
[2026-04-28 11:25:52] -rw-------. 1 boinc boinc      1030 Apr 28 11:22 memory_monitor_summary.json
[2026-04-28 11:25:52] -rw-------. 1 boinc boinc   1512704 Apr 28 11:22 agis_ddmendpoints.agis.ALL.json
[2026-04-28 11:25:52] -rw-------. 1 boinc boinc    303327 Apr 28 11:22 log.49860708._000107.job.log.tgz.1
[2026-04-28 11:25:52] -rw-------. 1 boinc boinc        95 Apr 28 11:22 pilot_heartbeat.json
[2026-04-28 11:25:52] -rw-------. 1 boinc boinc      6366 Apr 28 11:22 heartbeat_new.json
[2026-04-28 11:25:52] -rw-------. 1 boinc boinc      6257 Apr 28 11:22 heartbeat.json
[2026-04-28 11:25:52] -rw-------. 1 boinc boinc      4832 Apr 28 11:23 pilotlog.txt
[2026-04-28 11:25:52] -rw-------. 1 boinc boinc   1060890 Apr 28 11:23 log.49860708._000107.job.log.1
[2026-04-28 11:25:52] -rw-------. 1 boinc boinc       357 Apr 28 11:23 output.list
[2026-04-28 11:25:52] -rw-r--r--. 1 boinc boinc       410 Apr 28 11:23 runtime_log
[2026-04-28 11:25:52] -rw-------. 1 boinc boinc   1382400 Apr 28 11:23 result.tar.gz
[2026-04-28 11:25:52] -rw-r--r--. 1 boinc boinc      8828 Apr 28 11:23 runtime_log.err
[2026-04-28 11:25:52] -rw-------. 1 boinc boinc       665 Apr 28 11:23 28cb21a894eb.diag
[2026-04-28 11:25:52] -rw-r--r--. 1 boinc boinc        27 Apr 28 11:25 wrapper_checkpoint.txt
[2026-04-28 11:25:52] -rw-r--r--. 1 boinc boinc      8192 Apr 28 11:25 boinc_mmap_file
[2026-04-28 11:25:52] -rw-r--r--. 1 boinc boinc     21179 Apr 28 11:25 stderr.txt
[2026-04-28 11:25:52] HITS file was successfully produced:
[2026-04-28 11:25:52] -rw-------. 1 boinc boinc 178819465 Apr 28 11:22 shared/HITS.pool.root.1
[2026-04-28 11:25:52]  *** Contents of shared directory: ***
[2026-04-28 11:25:52] total 467488
[2026-04-28 11:25:52] -rw-r--r--. 2 boinc boinc 297775093 Apr 28 08:12 ATLAS.root_0
[2026-04-28 11:25:52] -rw-r--r--. 2 boinc boinc     15667 Apr 28 08:12 start_atlas.sh
[2026-04-28 11:25:52] -rw-r--r--. 2 boinc boinc    697389 Apr 28 08:12 input.tar.gz
[2026-04-28 11:25:52] -rw-------. 1 boinc boinc 178819465 Apr 28 11:22 HITS.pool.root.1
[2026-04-28 11:25:52] -rw-------. 1 boinc boinc   1382400 Apr 28 11:23 result.tar.gz
11:25:53 (3978562): run_atlas exited; CPU time 43651.465546
11:25:53 (3978562): called boinc_finish(0)

</stderr_txt>
]]>

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