Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:27:22 (3860214): wrapper (7.7.26015): starting
21:27:22 (3860214): wrapper: running run_atlas (--nthreads 4)
[2026-04-28 21:27:22] Arguments: --nthreads 4
[2026-04-28 21:27:22] Threads: 4
[2026-04-28 21:27:22] Checking for CVMFS
[2026-04-28 21:27:22] No cvmfs_config command found, will try listing directly
[2026-04-28 21:27:22] CVMFS is ok
[2026-04-28 21:27:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-28 21:27:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-28 21:27:22] Further information can be found at the LHC@home message board.
[2026-04-28 21:27:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-28 21:27:22] Checking for apptainer binary...
[2026-04-28 21:27:22] which: no apptainer in ((null))
[2026-04-28 21:27:22] apptainer is not installed, using version from CVMFS
[2026-04-28 21:27:22] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-28 21:27:22] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot52/slots/3/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut16.grid.cesnet.cz
[2026-04-28 21:27:22] apptainer works
[2026-04-28 21:27:22] Set ATHENA_PROC_NUMBER=4
[2026-04-28 21:27:22] Set ATHENA_CORE_NUMBER=4
[2026-04-28 21:27:22] Starting ATLAS job with PandaID=7116116946
[2026-04-28 21:27:22] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot52/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-29 01:58:25]  *** The last 200 lines of the pilot log: ***
[2026-04-29 01:58:25] 2026-04-28 23:54:12,959 | INFO     | total number of processed events: 400 (read)
[2026-04-29 01:58:25] 2026-04-28 23:54:12,983 | INFO     | using path: /var/lib/boinc/var/slot52/slots/3/PanDA_Pilot-7116116946/memory_monitor_summary.json (trf name=prmon)
[2026-04-29 01:58:25] 2026-04-28 23:54:12,983 | INFO     | extracted standard info from prmon json
[2026-04-29 01:58:25] 2026-04-28 23:54:12,983 | INFO     | extracted standard memory fields from prmon json
[2026-04-29 01:58:25] 2026-04-28 23:54:12,984 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-29 01:58:25] 2026-04-28 23:54:12,984 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-29 01:58:25] 2026-04-28 23:54:12,988 | INFO     | fitting pss+swap vs Time
[2026-04-29 01:58:25] 2026-04-28 23:54:12,989 | INFO     | sum of square deviations: 5576683165.5
[2026-04-29 01:58:25] 2026-04-28 23:54:12,990 | INFO     | sum of deviations: 1894353962.999998
[2026-04-29 01:58:25] 2026-04-28 23:54:12,990 | INFO     | mean x (centered): 0.0
[2026-04-29 01:58:25] 2026-04-28 23:54:12,991 | INFO     | mean y: 2335699.4580152673
[2026-04-29 01:58:25] 2026-04-28 23:54:12,991 | INFO     | intersect: 2335699.4580152673
[2026-04-29 01:58:25] 2026-04-28 23:54:12,991 | INFO     | chi2: 2.2507369295281303
[2026-04-29 01:58:25] 2026-04-28 23:54:12,991 | INFO     | sum of square deviations: 5263458688.0
[2026-04-29 01:58:25] 2026-04-28 23:54:12,993 | INFO     | sum of deviations: 18281294106.0
[2026-04-29 01:58:25] 2026-04-28 23:54:12,994 | INFO     | mean x (centered): 0.0
[2026-04-29 01:58:25] 2026-04-28 23:54:12,994 | INFO     | mean y: 2343552.3035019455
[2026-04-29 01:58:25] 2026-04-28 23:54:12,994 | INFO     | intersect: 2343552.3035019455
[2026-04-29 01:58:25] 2026-04-28 23:54:12,994 | INFO     | chi2: 1.444379325356571
[2026-04-29 01:58:25] 2026-04-28 23:54:12,994 | INFO     | current chi2=1.444379325356571 (change=35.82638173269824 %)
[2026-04-29 01:58:25] 2026-04-28 23:54:12,994 | INFO     | sum of square deviations: 4962187923.0
[2026-04-29 01:58:25] 2026-04-28 23:54:12,996 | INFO     | sum of deviations: 17746227909.0
[2026-04-29 01:58:25] 2026-04-28 23:54:12,996 | INFO     | mean x (centered): 0.0
[2026-04-29 01:58:25] 2026-04-28 23:54:12,996 | INFO     | mean y: 2343281.5
[2026-04-29 01:58:25] 2026-04-28 23:54:12,996 | INFO     | intersect: 2343281.5
[2026-04-29 01:58:25] 2026-04-28 23:54:12,997 | INFO     | chi2: 1.4448535139574883
[2026-04-29 01:58:25] 2026-04-28 23:54:12,997 | INFO     | current chi2=1.4448535139574883 (change=-0.032829921655111574 %)
[2026-04-29 01:58:25] 2026-04-28 23:54:12,997 | INFO     | right removable region: 251
[2026-04-29 01:58:25] 2026-04-28 23:54:12,997 | INFO     | sum of square deviations: 5263458688.0
[2026-04-29 01:58:25] 2026-04-28 23:54:12,999 | INFO     | sum of deviations: -32265111921.000008
[2026-04-29 01:58:25] 2026-04-28 23:54:12,999 | INFO     | mean x (centered): 0.0
[2026-04-29 01:58:25] 2026-04-28 23:54:12,999 | INFO     | mean y: 2352160.439688716
[2026-04-29 01:58:25] 2026-04-28 23:54:12,999 | INFO     | intersect: 2352160.439688716
[2026-04-29 01:58:25] 2026-04-28 23:54:13,000 | INFO     | chi2: 0.8742745110138784
[2026-04-29 01:58:25] 2026-04-28 23:54:13,000 | INFO     | current chi2=0.8742745110138784 (change=61.1560773920757 %)
[2026-04-29 01:58:25] 2026-04-28 23:54:13,000 | INFO     | sum of square deviations: 4962187923.0
[2026-04-29 01:58:25] 2026-04-28 23:54:13,002 | INFO     | sum of deviations: -28234267209.5
[2026-04-29 01:58:25] 2026-04-28 23:54:13,002 | INFO     | mean x (centered): 0.0
[2026-04-29 01:58:25] 2026-04-28 23:54:13,002 | INFO     | mean y: 2350109.3214285714
[2026-04-29 01:58:25] 2026-04-28 23:54:13,002 | INFO     | intersect: 2350109.3214285714
[2026-04-29 01:58:25] 2026-04-28 23:54:13,002 | INFO     | chi2: 0.866805332244203
[2026-04-29 01:58:25] 2026-04-28 23:54:13,002 | INFO     | current chi2=0.866805332244203 (change=0.8543287806725144 %)
[2026-04-29 01:58:25] 2026-04-28 23:54:13,003 | INFO     | left removable region: 10
[2026-04-29 01:58:25] 2026-04-28 23:54:13,003 | INFO     | sum of square deviations: 4340323240.0
[2026-04-29 01:58:25] 2026-04-28 23:54:13,004 | INFO     | sum of deviations: -11840666628.999996
[2026-04-29 01:58:25] 2026-04-28 23:54:13,005 | INFO     | mean x (centered): 0.0
[2026-04-29 01:58:25] 2026-04-28 23:54:13,005 | INFO     | mean y: 2358609.643153527
[2026-04-29 01:58:25] 2026-04-28 23:54:13,005 | INFO     | intersect: 2358609.643153527
[2026-04-29 01:58:25] 2026-04-28 23:54:13,005 | INFO     | chi2: 0.04208690828639826
[2026-04-29 01:58:25] 2026-04-28 23:54:13,005 | INFO     | current memory leak: -2.73 B/s (using 241 data points, chi2=0.04)
[2026-04-29 01:58:25] 2026-04-28 23:54:13,005 | INFO     | could have reported an average CPU frequency of 2669 MHz (12 samples)
[2026-04-29 01:58:25] 2026-04-28 23:54:13,006 | INFO     | ..............................
[2026-04-29 01:58:25] 2026-04-28 23:54:13,006 | INFO     | . Timing measurements:
[2026-04-29 01:58:25] 2026-04-28 23:54:13,006 | INFO     | . get job = 0 s
[2026-04-29 01:58:25] 2026-04-28 23:54:13,006 | INFO     | . initial setup = 9 s
[2026-04-29 01:58:25] 2026-04-28 23:54:13,006 | INFO     | . payload setup = 19 s
[2026-04-29 01:58:25] 2026-04-28 23:54:13,006 | INFO     | . stage-in = 0 s
[2026-04-29 01:58:25] 2026-04-28 23:54:13,006 | INFO     | . payload execution = 15943 s
[2026-04-29 01:58:25] 2026-04-28 23:54:13,006 | INFO     | . stage-out = 1 s
[2026-04-29 01:58:25] 2026-04-28 23:54:13,006 | INFO     | . log creation = 0 s
[2026-04-29 01:58:25] 2026-04-28 23:54:13,006 | INFO     | ..............................
[2026-04-29 01:58:25] 2026-04-28 23:54:13,099 | INFO     | 
[2026-04-29 01:58:25] 2026-04-28 23:54:13,099 | INFO     | job summary report
[2026-04-29 01:58:25] 2026-04-28 23:54:13,099 | INFO     | --------------------------------------------------
[2026-04-29 01:58:25] 2026-04-28 23:54:13,099 | INFO     | PanDA job id: 7116116946
[2026-04-29 01:58:25] 2026-04-28 23:54:13,099 | INFO     | task id: 49863714
[2026-04-29 01:58:25] 2026-04-28 23:54:13,099 | INFO     | errors: (none)
[2026-04-29 01:58:25] 2026-04-28 23:54:13,099 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-29 01:58:25] 2026-04-28 23:54:13,099 | INFO     | pilot state: finished 
[2026-04-29 01:58:25] 2026-04-28 23:54:13,100 | INFO     | transexitcode: 0
[2026-04-29 01:58:25] 2026-04-28 23:54:13,100 | INFO     | exeerrorcode: 0
[2026-04-29 01:58:25] 2026-04-28 23:54:13,100 | INFO     | exeerrordiag: 
[2026-04-29 01:58:25] 2026-04-28 23:54:13,100 | INFO     | exitcode: 0
[2026-04-29 01:58:25] 2026-04-28 23:54:13,100 | INFO     | exitmsg: OK
[2026-04-29 01:58:25] 2026-04-28 23:54:13,100 | INFO     | cpuconsumptiontime: 60634 s
[2026-04-29 01:58:25] 2026-04-28 23:54:13,100 | INFO     | nevents: 400
[2026-04-29 01:58:25] 2026-04-28 23:54:13,100 | INFO     | neventsw: 0
[2026-04-29 01:58:25] 2026-04-28 23:54:13,100 | INFO     | pid: 3869704
[2026-04-29 01:58:25] 2026-04-28 23:54:13,100 | INFO     | pgrp: 3869704
[2026-04-29 01:58:25] 2026-04-28 23:54:13,100 | INFO     | corecount: 4
[2026-04-29 01:58:25] 2026-04-28 23:54:13,101 | INFO     | event service: False
[2026-04-29 01:58:25] 2026-04-28 23:54:13,101 | INFO     | sizes: {0: 2280899, 1: 2282473, 11: 2282501, 15966: 2314832, 15968: 2323880, 15970: 2323936, 15973: 2324258}
[2026-04-29 01:58:25] 2026-04-28 23:54:13,101 | INFO     | --------------------------------------------------
[2026-04-29 01:58:25] 2026-04-28 23:54:13,101 | INFO     | 
[2026-04-29 01:58:25] 2026-04-28 23:54:13,101 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot52/slots/3
[2026-04-29 01:58:25] 2026-04-28 23:54:13,136 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-29 01:58:25] 2026-04-28 23:54:13,136 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-29 01:58:25] 2026-04-28 23:54:13,137 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-29 01:58:25] 2026-04-28 23:54:13,137 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-29 01:58:25] 2026-04-28 23:54:13,137 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-29 01:58:25] 2026-04-28 23:54:13,137 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-29 01:58:25] 2026-04-28 23:54:13,137 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-29 01:58:25] 2026-04-28 23:54:13,137 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-29 01:58:25] 2026-04-28 23:54:13,137 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-29 01:58:25] 2026-04-28 23:54:13,138 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-29 01:58:25] 2026-04-28 23:54:13,138 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-29 01:58:25] 2026-04-28 23:54:13,138 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-29 01:58:25] 2026-04-28 23:54:13,138 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-29 01:58:25] 2026-04-28 23:54:13,138 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-29 01:58:25] 2026-04-28 23:54:13,138 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-29 01:58:25] 2026-04-28 23:54:13,138 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-29 01:58:25] 2026-04-28 23:54:13,139 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-29 01:58:25] 2026-04-28 23:54:13,139 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-29 01:58:25] 2026-04-28 23:54:13,139 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-29 01:58:25] 2026-04-28 23:54:13,139 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-29 01:58:25] 2026-04-28 23:54:13,139 | INFO     | job 7116116946 has completed (purged errors)
[2026-04-29 01:58:25] 2026-04-28 23:54:13,142 | INFO     | overall cleanup function is called
[2026-04-29 01:58:25] 2026-04-28 23:54:14,153 | INFO     | --- collectZombieJob: --- 10, [3869704]
[2026-04-29 01:58:25] 2026-04-28 23:54:14,153 | INFO     | zombie collector waiting for pid 3869704
[2026-04-29 01:58:25] 2026-04-28 23:54:14,153 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-29 01:58:25] 2026-04-28 23:54:14,154 | INFO     | collected zombie processes
[2026-04-29 01:58:25] 2026-04-28 23:54:14,154 | INFO     | will attempt to kill all subprocesses of pid=3869704
[2026-04-29 01:58:25] 2026-04-28 23:54:14,159 | INFO     | PID=3864297 has CPU usage=24.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-29 01:58:25] 2026-04-28 23:54:14,159 | INFO     | .. there are 23 such processes running
[2026-04-29 01:58:25] 2026-04-28 23:54:14,855 | INFO     | process IDs to be killed: [3869704] (in reverse order)
[2026-04-29 01:58:25] 2026-04-28 23:54:15,191 | WARNING  | found no corresponding commands to process id(s)
[2026-04-29 01:58:25] 2026-04-28 23:54:15,191 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-29 01:58:25] 2026-04-28 23:54:15,222 | INFO     | did not find any defunct processes belonging to 3869704
[2026-04-29 01:58:25] 2026-04-28 23:54:15,251 | INFO     | did not find any defunct processes belonging to 3869704
[2026-04-29 01:58:25] 2026-04-28 23:54:15,251 | INFO     | Ready for new job
[2026-04-29 01:58:25] 2026-04-28 23:54:15,253 | INFO     | ***************************************
[2026-04-29 01:58:25] 2026-04-28 23:54:15,254 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-29 01:58:25] 2026-04-28 23:54:15,254 | INFO     | ***************************************
[2026-04-29 01:58:25] 2026-04-28 23:54:15,254 | INFO     | 
[2026-04-29 01:58:25] 2026-04-28 23:54:15,263 | INFO     | architecture information:
[2026-04-29 01:58:25] 2026-04-28 23:54:15,264 | INFO     | executing command: cat /etc/os-release
[2026-04-29 01:58:25] 2026-04-28 23:54:15,285 | INFO     | cat /etc/os-release:
[2026-04-29 01:58:25] NAME="CentOS Linux"
[2026-04-29 01:58:25] VERSION="7 (Core)"
[2026-04-29 01:58:25] ID="centos"
[2026-04-29 01:58:25] ID_LIKE="rhel fedora"
[2026-04-29 01:58:25] VERSION_ID="7"
[2026-04-29 01:58:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-29 01:58:25] ANSI_COLOR="0;31"
[2026-04-29 01:58:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-29 01:58:25] HOME_URL="https://www.centos.org/"
[2026-04-29 01:58:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-29 01:58:25] 
[2026-04-29 01:58:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-29 01:58:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-29 01:58:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-29 01:58:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-29 01:58:25] 
[2026-04-29 01:58:25] 2026-04-28 23:54:15,285 | INFO     | ***************************************
[2026-04-29 01:58:25] 2026-04-28 23:54:15,788 | INFO     | executing command: df -mP /var/lib/boinc/var/slot52/slots/3
[2026-04-29 01:58:25] 2026-04-28 23:54:15,811 | INFO     | sufficient remaining disk space (27758952448 B)
[2026-04-29 01:58:25] 2026-04-28 23:54:15,812 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-29 01:58:25] 2026-04-28 23:54:15,812 | INFO     | current server update state: UPDATING_FINAL
[2026-04-29 01:58:25] 2026-04-28 23:54:15,812 | INFO     | update_server=False
[2026-04-29 01:58:25] 2026-04-28 23:54:15,812 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-29 01:58:25] 2026-04-28 23:54:15,865 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-29 01:58:25] 2026-04-28 23:54:15,865 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-29 01:58:25] 2026-04-28 23:54:15,865 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-29 01:58:25] 2026-04-28 23:54:15,865 | INFO     | will abort loop
[2026-04-29 01:58:25] 2026-04-28 23:54:15,937 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-29 01:58:25] 2026-04-28 23:54:16,252 | INFO     | all data control threads have been joined
[2026-04-29 01:58:25] 2026-04-28 23:54:16,365 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-29 01:58:25] 2026-04-28 23:54:16,818 | INFO     | [job] retrieve thread has finished
[2026-04-29 01:58:25] 2026-04-28 23:54:16,871 | INFO     | [job] job monitor thread has finished
[2026-04-29 01:58:25] 2026-04-28 23:54:16,885 | INFO     | [job] validate thread has finished
[2026-04-29 01:58:25] 2026-04-28 23:54:17,031 | INFO     | all payload control threads have been joined
[2026-04-29 01:58:25] 2026-04-28 23:54:17,067 | INFO     | [payload] validate_post thread has finished
[2026-04-29 01:58:25] 2026-04-28 23:54:17,258 | INFO     | [data] control thread has finished
[2026-04-29 01:58:25] 2026-04-28 23:54:17,389 | INFO     | all job control threads have been joined
[2026-04-29 01:58:25] 2026-04-28 23:54:17,518 | INFO     | [payload] failed_post thread has finished
[2026-04-29 01:58:25] 2026-04-28 23:54:17,527 | INFO     | [payload] execute_payloads thread has finished
[2026-04-29 01:58:25] 2026-04-28 23:54:17,615 | INFO     | [job] create_data_payload thread has finished
[2026-04-29 01:58:25] 2026-04-28 23:54:17,785 | INFO     | [data] copytool_in thread has finished
[2026-04-29 01:58:25] 2026-04-28 23:54:17,942 | INFO     | [data] copytool_out thread has finished
[2026-04-29 01:58:25] 2026-04-28 23:54:18,036 | INFO     | [payload] control thread has finished
[2026-04-29 01:58:25] 2026-04-28 23:54:18,069 | INFO     | [payload] validate_pre thread has finished
[2026-04-29 01:58:25] 2026-04-28 23:54:18,109 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-29 01:58:25] 2026-04-28 23:54:18,394 | INFO     | [job] control thread has finished
[2026-04-29 01:58:25] 2026-04-28 23:54:19,111 | INFO     | [job] queue monitor thread has finished
[2026-04-29 01:58:25] 2026-04-28 23:54:20,371 | INFO     | [data] queue_monitor thread has finished
[2026-04-29 01:58:25] 2026-04-28 23:54:26,319 | INFO     | job.realtimelogging is not enabled
[2026-04-29 01:58:25] 2026-04-28 23:54:27,324 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-29 01:58:25] 2026-04-28 23:54:47,238 | INFO     | PID=3864297 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-29 01:58:25] 2026-04-28 23:54:47,238 | INFO     | .. there are 23 such processes running
[2026-04-29 01:58:25] 2026-04-28 23:54:47,238 | INFO     | found 0 job(s) in 20 queues
[2026-04-29 01:58:25] 2026-04-28 23:54:47,239 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-29 01:58:25] 2026-04-28 23:54:47,239 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-29 01:58:25] 2026-04-28 23:55:14,994 | INFO     | [monitor] cgroup control has ended
[2026-04-29 01:58:25] 2026-04-28 23:55:15,014 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22697381123904)>', '<ExcThread(monitor, started 22697071306496)>']
[2026-04-29 01:58:25] 2026-04-28 23:55:15,379 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-29 01:58:25] 2026-04-28 23:55:15,380 | INFO     | [monitor] control thread has ended
[2026-04-29 01:58:25] 2026-04-28 23:55:20,039 | INFO     | all workflow threads have been joined
[2026-04-29 01:58:25] 2026-04-28 23:55:20,039 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-29 01:58:25] 2026-04-28 23:55:20,039 | INFO     | traces error code: 0
[2026-04-29 01:58:25] 2026-04-28 23:55:20,039 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-29 01:58:25] 2026-04-28 23:55:20,234 [wrapper] ==== pilot stdout END ====
[2026-04-29 01:58:25] 2026-04-28 23:55:20,238 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-29 01:58:25] 2026-04-28 23:55:20,243 [wrapper] pilotpid: 3864297
[2026-04-29 01:58:25] 2026-04-28 23:55:20,247 [wrapper] Pilot exit status: 0
[2026-04-29 01:58:25] 2026-04-28 23:55:20,264 [wrapper] pandaids: 7116116946
[2026-04-29 01:58:25] 2026-04-28 23:55:20,485 [wrapper] cleanup supervisor_pilot  250979 3864298
[2026-04-29 01:58:25] 2026-04-28 23:55:20,494 [wrapper] Test setup, not cleaning
[2026-04-29 01:58:25] 2026-04-28 23:55:20,497 [wrapper] apfmon messages muted
[2026-04-29 01:58:25] 2026-04-28 23:55:20,501 [wrapper] ==== wrapper stdout END ====
[2026-04-29 01:58:25] 2026-04-28 23:55:20,505 [wrapper] ==== wrapper stderr END ====
[2026-04-29 01:58:25]  *** Error codes and diagnostics ***
[2026-04-29 01:58:25]     "exeErrorCode": 0,
[2026-04-29 01:58:25]     "pilotErrorCode": 0,
[2026-04-29 01:58:25]  *** Listing of results directory ***
[2026-04-29 01:58:25] total 470880
[2026-04-29 01:58:25] -rw-r--r--. 1 boinc boinc    683926 Apr 26 16:58 pilot3.tar.gz
[2026-04-29 01:58:25] -rwx------. 1 boinc boinc     36322 Apr 26 16:59 runpilot2-wrapper.sh
[2026-04-29 01:58:25] -rw-r--r--. 1 boinc boinc      5631 Apr 26 17:02 queuedata.json
[2026-04-29 01:58:25] -rw-r--r--. 1 boinc boinc       100 Apr 28 21:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-29 01:58:25] -rwxr-xr-x. 1 boinc boinc      7986 Apr 28 21:27 run_atlas
[2026-04-29 01:58:25] -rw-r--r--. 1 boinc boinc       105 Apr 28 21:27 job.xml
[2026-04-29 01:58:25] -rw-r--r--. 2 boinc boinc 263097393 Apr 28 21:27 EVNT.49863712._000076.pool.root.1
[2026-04-29 01:58:25] -rw-r--r--. 1 boinc boinc      6539 Apr 28 21:27 init_data.xml
[2026-04-29 01:58:25] -rw-r--r--. 2 boinc boinc    697411 Apr 28 21:27 input.tar.gz
[2026-04-29 01:58:25] -rw-r--r--. 2 boinc boinc     15667 Apr 28 21:27 start_atlas.sh
[2026-04-29 01:58:25] drwxrwx--x. 2 boinc boinc      4096 Apr 28 21:27 shared
[2026-04-29 01:58:25] -rw-r--r--. 1 boinc boinc         0 Apr 28 21:27 boinc_lockfile
[2026-04-29 01:58:25] -rw-r--r--. 1 boinc boinc      2574 Apr 28 21:27 pandaJob.out
[2026-04-29 01:58:25] -rw-------. 1 boinc boinc   1001831 Apr 28 21:27 agis_schedconf.cvmfs.json
[2026-04-29 01:58:25] -rw-------. 1 boinc boinc       443 Apr 28 21:27 workernode_map.json
[2026-04-29 01:58:25] drwx------. 5 boinc boinc      4096 Apr 28 21:27 pilot3
[2026-04-29 01:58:25] -rw-------. 1 boinc boinc 211292528 Apr 29 01:53 HITS.49863714._001389.pool.root.1
[2026-04-29 01:58:25] -rw-r--r--. 1 boinc boinc       487 Apr 29 01:53 boinc_task_state.xml
[2026-04-29 01:58:25] -rw-------. 1 boinc boinc        95 Apr 29 01:53 pilot_heartbeat.json
[2026-04-29 01:58:25] -rw-------. 1 boinc boinc      1033 Apr 29 01:54 memory_monitor_summary.json
[2026-04-29 01:58:25] -rw-------. 1 boinc boinc   1512704 Apr 29 01:54 agis_ddmendpoints.agis.ALL.json
[2026-04-29 01:58:25] -rw-------. 1 boinc boinc    354907 Apr 29 01:54 log.49863714._001389.job.log.tgz.1
[2026-04-29 01:58:25] -rw-------. 1 boinc boinc      6376 Apr 29 01:54 heartbeat_new.json
[2026-04-29 01:58:25] -rw-------. 1 boinc boinc      6267 Apr 29 01:54 heartbeat.json
[2026-04-29 01:58:25] -rw-------. 1 boinc boinc      5090 Apr 29 01:55 pilotlog.txt
[2026-04-29 01:58:25] -rw-------. 1 boinc boinc   1466834 Apr 29 01:55 log.49863714._001389.job.log.1
[2026-04-29 01:58:25] -rw-------. 1 boinc boinc       357 Apr 29 01:55 output.list
[2026-04-29 01:58:25] -rw-r--r--. 1 boinc boinc       410 Apr 29 01:55 runtime_log
[2026-04-29 01:58:25] -rw-------. 1 boinc boinc   1843200 Apr 29 01:55 result.tar.gz
[2026-04-29 01:58:25] -rw-r--r--. 1 boinc boinc      8828 Apr 29 01:55 runtime_log.err
[2026-04-29 01:58:25] -rw-------. 1 boinc boinc       666 Apr 29 01:55 28597de23bec.diag
[2026-04-29 01:58:25] -rw-r--r--. 1 boinc boinc        27 Apr 29 01:57 wrapper_checkpoint.txt
[2026-04-29 01:58:25] -rw-r--r--. 1 boinc boinc      8192 Apr 29 01:58 boinc_mmap_file
[2026-04-29 01:58:25] -rw-r--r--. 1 boinc boinc     20828 Apr 29 01:58 stderr.txt
[2026-04-29 01:58:25] HITS file was successfully produced:
[2026-04-29 01:58:25] -rw-------. 1 boinc boinc 211292528 Apr 29 01:53 shared/HITS.pool.root.1
[2026-04-29 01:58:25]  *** Contents of shared directory: ***
[2026-04-29 01:58:25] total 465784
[2026-04-29 01:58:25] -rw-r--r--. 2 boinc boinc 263097393 Apr 28 21:27 ATLAS.root_0
[2026-04-29 01:58:25] -rw-r--r--. 2 boinc boinc    697411 Apr 28 21:27 input.tar.gz
[2026-04-29 01:58:25] -rw-r--r--. 2 boinc boinc     15667 Apr 28 21:27 start_atlas.sh
[2026-04-29 01:58:25] -rw-------. 1 boinc boinc 211292528 Apr 29 01:53 HITS.pool.root.1
[2026-04-29 01:58:25] -rw-------. 1 boinc boinc   1843200 Apr 29 01:55 result.tar.gz
01:58:26 (3860214): run_atlas exited; CPU time 61626.593393
01:58:26 (3860214): called boinc_finish(0)

</stderr_txt>
]]>

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