Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:39:13 (813): wrapper (7.7.26015): starting
05:39:13 (813): wrapper: running run_atlas (--nthreads 8)
[2026-04-27 05:39:13] Arguments: --nthreads 8
[2026-04-27 05:39:13] Threads: 8
[2026-04-27 05:39:13] Checking for CVMFS
[2026-04-27 05:39:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-27 05:39:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-27 05:39:16] Running cvmfs_config stat atlas.cern.ch
[2026-04-27 05:39:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-27 05:39:18] 2.11.2.0 19231 16490 106212 158913 3 54 18052636 25165825 96 130560 0 7726406 99.821 3042105 3327 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-27 05:39:18] CVMFS is ok
[2026-04-27 05:39:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-27 05:39:18] Checking for apptainer binary...
[2026-04-27 05:39:18] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-27 05:39:18] Running /usr/bin/apptainer --version
[2026-04-27 05:39:18] apptainer version 1.3.2-1.el7
[2026-04-27 05:39:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-27 05:39:39] cg-vwn362.simple-grid.lan
[2026-04-27 05:39:39] apptainer works
[2026-04-27 05:39:39] Set ATHENA_PROC_NUMBER=8
[2026-04-27 05:39:39] Set ATHENA_CORE_NUMBER=8
[2026-04-27 05:39:39] Starting ATLAS job with PandaID=7114723835
[2026-04-27 05:39:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-27 11:37:22]  *** The last 200 lines of the pilot log: ***
[2026-04-27 11:37:22] 2026-04-27 09:36:15,947 | INFO     | this job has now completed (state=finished)
[2026-04-27 11:37:22] 2026-04-27 09:36:15,947 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-27 11:37:22] 2026-04-27 09:36:15,947 | INFO     | log transfer has been attempted: DONE
[2026-04-27 11:37:22] 2026-04-27 09:36:15,948 | INFO     | job 7114723835 has finished - writing final server update
[2026-04-27 11:37:22] 2026-04-27 09:36:15,948 | INFO     | total number of processed events: 400 (read)
[2026-04-27 11:37:22] 2026-04-27 09:36:15,950 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-7114723835/memory_monitor_summary.json (trf name=prmon)
[2026-04-27 11:37:22] 2026-04-27 09:36:15,951 | INFO     | extracted standard info from prmon json
[2026-04-27 11:37:22] 2026-04-27 09:36:15,951 | INFO     | extracted standard memory fields from prmon json
[2026-04-27 11:37:22] 2026-04-27 09:36:15,951 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-27 11:37:22] 2026-04-27 09:36:15,951 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-27 11:37:22] 2026-04-27 09:36:15,958 | INFO     | fitting pss+swap vs Time
[2026-04-27 11:37:22] 2026-04-27 09:36:15,959 | INFO     | sum of square deviations: 11867638328.0
[2026-04-27 11:37:22] 2026-04-27 09:36:15,963 | INFO     | sum of deviations: 245521944754.00003
[2026-04-27 11:37:22] 2026-04-27 09:36:15,963 | INFO     | mean x (centered): 0.0
[2026-04-27 11:37:22] 2026-04-27 09:36:15,963 | INFO     | mean y: 2447289.258160237
[2026-04-27 11:37:22] 2026-04-27 09:36:15,963 | INFO     | intersect: 2447289.258160237
[2026-04-27 11:37:22] 2026-04-27 09:36:15,964 | INFO     | chi2: 9.107463483734946
[2026-04-27 11:37:22] 2026-04-27 09:36:15,964 | INFO     | sum of square deviations: 11347200663.0
[2026-04-27 11:37:22] 2026-04-27 09:36:15,968 | INFO     | sum of deviations: 264240044213.5
[2026-04-27 11:37:22] 2026-04-27 09:36:15,968 | INFO     | mean x (centered): 0.0
[2026-04-27 11:37:22] 2026-04-27 09:36:15,968 | INFO     | mean y: 2452693.936746988
[2026-04-27 11:37:22] 2026-04-27 09:36:15,968 | INFO     | intersect: 2452693.936746988
[2026-04-27 11:37:22] 2026-04-27 09:36:15,969 | INFO     | chi2: 8.377641010409947
[2026-04-27 11:37:22] 2026-04-27 09:36:15,969 | INFO     | current chi2=8.377641010409947 (change=8.013454839850766 %)
[2026-04-27 11:37:22] 2026-04-27 09:36:15,969 | INFO     | right removable region: 331
[2026-04-27 11:37:22] 2026-04-27 09:36:15,970 | INFO     | sum of square deviations: 11347200663.0
[2026-04-27 11:37:22] 2026-04-27 09:36:15,973 | INFO     | sum of deviations: 123705441720.99998
[2026-04-27 11:37:22] 2026-04-27 09:36:15,973 | INFO     | mean x (centered): 0.0
[2026-04-27 11:37:22] 2026-04-27 09:36:15,974 | INFO     | mean y: 2482974.765060241
[2026-04-27 11:37:22] 2026-04-27 09:36:15,974 | INFO     | intersect: 2482974.765060241
[2026-04-27 11:37:22] 2026-04-27 09:36:15,974 | INFO     | chi2: 3.9100319233948686
[2026-04-27 11:37:22] 2026-04-27 09:36:15,974 | INFO     | current chi2=3.9100319233948686 (change=57.067827607787734 %)
[2026-04-27 11:37:22] 2026-04-27 09:36:15,975 | INFO     | sum of square deviations: 10842205148.0
[2026-04-27 11:37:22] 2026-04-27 09:36:15,981 | INFO     | sum of deviations: 29895851120.000004
[2026-04-27 11:37:22] 2026-04-27 09:36:15,985 | INFO     | mean x (centered): 0.0
[2026-04-27 11:37:22] 2026-04-27 09:36:15,985 | INFO     | mean y: 2511277.5840978594
[2026-04-27 11:37:22] 2026-04-27 09:36:15,985 | INFO     | intersect: 2511277.5840978594
[2026-04-27 11:37:22] 2026-04-27 09:36:15,986 | INFO     | chi2: 1.0337673427210545
[2026-04-27 11:37:22] 2026-04-27 09:36:15,986 | INFO     | current chi2=1.0337673427210545 (change=73.56115338763038 %)
[2026-04-27 11:37:22] 2026-04-27 09:36:15,986 | INFO     | sum of square deviations: 10352419220.5
[2026-04-27 11:37:22] 2026-04-27 09:36:15,990 | INFO     | sum of deviations: 9529833854.499977
[2026-04-27 11:37:22] 2026-04-27 09:36:15,990 | INFO     | mean x (centered): 0.0
[2026-04-27 11:37:22] 2026-04-27 09:36:15,990 | INFO     | mean y: 2517597.034161491
[2026-04-27 11:37:22] 2026-04-27 09:36:15,990 | INFO     | intersect: 2517597.034161491
[2026-04-27 11:37:22] 2026-04-27 09:36:15,991 | INFO     | chi2: 0.872519766681374
[2026-04-27 11:37:22] 2026-04-27 09:36:15,991 | INFO     | current chi2=0.872519766681374 (change=15.59805280898592 %)
[2026-04-27 11:37:22] 2026-04-27 09:36:15,991 | INFO     | left removable region: 15
[2026-04-27 11:37:22] 2026-04-27 09:36:15,991 | INFO     | sum of square deviations: 9784425315.0
[2026-04-27 11:37:22] 2026-04-27 09:36:15,995 | INFO     | sum of deviations: 30738584938.5
[2026-04-27 11:37:22] 2026-04-27 09:36:15,995 | INFO     | mean x (centered): 0.0
[2026-04-27 11:37:22] 2026-04-27 09:36:15,995 | INFO     | mean y: 2524320.2943037977
[2026-04-27 11:37:22] 2026-04-27 09:36:15,995 | INFO     | intersect: 2524320.2943037977
[2026-04-27 11:37:22] 2026-04-27 09:36:15,996 | INFO     | chi2: 0.07682054694907006
[2026-04-27 11:37:22] 2026-04-27 09:36:15,996 | INFO     | current memory leak: 3.14 B/s (using 316 data points, chi2=0.08)
[2026-04-27 11:37:22] 2026-04-27 09:36:15,997 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2026-04-27 11:37:22] 2026-04-27 09:36:15,997 | INFO     | ..............................
[2026-04-27 11:37:22] 2026-04-27 09:36:15,997 | INFO     | . Timing measurements:
[2026-04-27 11:37:22] 2026-04-27 09:36:15,997 | INFO     | . get job = 0 s
[2026-04-27 11:37:22] 2026-04-27 09:36:15,997 | INFO     | . initial setup = 140 s
[2026-04-27 11:37:22] 2026-04-27 09:36:15,997 | INFO     | . payload setup = 265 s
[2026-04-27 11:37:22] 2026-04-27 09:36:15,998 | INFO     | . stage-in = 0 s
[2026-04-27 11:37:22] 2026-04-27 09:36:15,998 | INFO     | . payload execution = 20692 s
[2026-04-27 11:37:22] 2026-04-27 09:36:15,998 | INFO     | . stage-out = 3 s
[2026-04-27 11:37:22] 2026-04-27 09:36:15,998 | INFO     | . log creation = 1 s
[2026-04-27 11:37:22] 2026-04-27 09:36:15,998 | INFO     | ..............................
[2026-04-27 11:37:22] 2026-04-27 09:36:16,118 | INFO     | 
[2026-04-27 11:37:22] 2026-04-27 09:36:16,118 | INFO     | job summary report
[2026-04-27 11:37:22] 2026-04-27 09:36:16,118 | INFO     | --------------------------------------------------
[2026-04-27 11:37:22] 2026-04-27 09:36:16,118 | INFO     | PanDA job id: 7114723835
[2026-04-27 11:37:22] 2026-04-27 09:36:16,118 | INFO     | task id: 49863879
[2026-04-27 11:37:22] 2026-04-27 09:36:16,118 | INFO     | errors: (none)
[2026-04-27 11:37:22] 2026-04-27 09:36:16,118 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-27 11:37:22] 2026-04-27 09:36:16,118 | INFO     | pilot state: finished 
[2026-04-27 11:37:22] 2026-04-27 09:36:16,118 | INFO     | transexitcode: 0
[2026-04-27 11:37:22] 2026-04-27 09:36:16,119 | INFO     | exeerrorcode: 0
[2026-04-27 11:37:22] 2026-04-27 09:36:16,119 | INFO     | exeerrordiag: 
[2026-04-27 11:37:22] 2026-04-27 09:36:16,119 | INFO     | exitcode: 0
[2026-04-27 11:37:22] 2026-04-27 09:36:16,119 | INFO     | exitmsg: OK
[2026-04-27 11:37:22] 2026-04-27 09:36:16,119 | INFO     | cpuconsumptiontime: 78723 s
[2026-04-27 11:37:22] 2026-04-27 09:36:16,119 | INFO     | nevents: 400
[2026-04-27 11:37:22] 2026-04-27 09:36:16,119 | INFO     | neventsw: 0
[2026-04-27 11:37:22] 2026-04-27 09:36:16,119 | INFO     | pid: 9298
[2026-04-27 11:37:22] 2026-04-27 09:36:16,119 | INFO     | pgrp: 9298
[2026-04-27 11:37:22] 2026-04-27 09:36:16,119 | INFO     | corecount: 8
[2026-04-27 11:37:22] 2026-04-27 09:36:16,120 | INFO     | event service: False
[2026-04-27 11:37:22] 2026-04-27 09:36:16,120 | INFO     | sizes: {0: 2273996, 1: 2274681, 2: 2265326, 3: 2276510, 13: 2276538, 20962: 2310403, 20966: 2319401, 20969: 2319651}
[2026-04-27 11:37:22] 2026-04-27 09:36:16,120 | INFO     | --------------------------------------------------
[2026-04-27 11:37:22] 2026-04-27 09:36:16,120 | INFO     | 
[2026-04-27 11:37:22] 2026-04-27 09:36:16,120 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2026-04-27 11:37:22] 2026-04-27 09:36:16,667 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-27 11:37:22] 2026-04-27 09:36:16,667 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-27 11:37:22] 2026-04-27 09:36:16,668 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-27 11:37:22] 2026-04-27 09:36:16,668 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-27 11:37:22] 2026-04-27 09:36:16,668 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-27 11:37:22] 2026-04-27 09:36:16,668 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-27 11:37:22] 2026-04-27 09:36:16,668 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-27 11:37:22] 2026-04-27 09:36:16,668 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-27 11:37:22] 2026-04-27 09:36:16,668 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-27 11:37:22] 2026-04-27 09:36:16,668 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-27 11:37:22] 2026-04-27 09:36:16,668 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-27 11:37:22] 2026-04-27 09:36:16,668 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-27 11:37:22] 2026-04-27 09:36:16,668 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-27 11:37:22] 2026-04-27 09:36:16,669 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-27 11:37:22] 2026-04-27 09:36:16,669 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-27 11:37:22] 2026-04-27 09:36:16,669 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-27 11:37:22] 2026-04-27 09:36:16,669 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-27 11:37:22] 2026-04-27 09:36:16,669 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-27 11:37:22] 2026-04-27 09:36:16,669 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-27 11:37:22] 2026-04-27 09:36:16,669 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-27 11:37:22] 2026-04-27 09:36:16,669 | INFO     | job 7114723835 has completed (purged errors)
[2026-04-27 11:37:22] 2026-04-27 09:36:16,670 | INFO     | overall cleanup function is called
[2026-04-27 11:37:22] 2026-04-27 09:36:17,678 | INFO     | --- collectZombieJob: --- 10, [9298]
[2026-04-27 11:37:22] 2026-04-27 09:36:17,678 | INFO     | zombie collector waiting for pid 9298
[2026-04-27 11:37:22] 2026-04-27 09:36:17,678 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-27 11:37:22] 2026-04-27 09:36:17,678 | INFO     | collected zombie processes
[2026-04-27 11:37:22] 2026-04-27 09:36:17,678 | INFO     | will attempt to kill all subprocesses of pid=9298
[2026-04-27 11:37:22] 2026-04-27 09:36:17,736 | INFO     | process IDs to be killed: [9298] (in reverse order)
[2026-04-27 11:37:22] 2026-04-27 09:36:18,689 | WARNING  | found no corresponding commands to process id(s)
[2026-04-27 11:37:22] 2026-04-27 09:36:18,690 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-27 11:37:22] 2026-04-27 09:36:18,692 | INFO     | did not find any defunct processes belonging to 9298
[2026-04-27 11:37:22] 2026-04-27 09:36:18,693 | INFO     | did not find any defunct processes belonging to 9298
[2026-04-27 11:37:22] 2026-04-27 09:36:18,693 | INFO     | Ready for new job
[2026-04-27 11:37:22] 2026-04-27 09:36:18,695 | INFO     | ***************************************
[2026-04-27 11:37:22] 2026-04-27 09:36:18,696 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-27 11:37:22] 2026-04-27 09:36:18,696 | INFO     | ***************************************
[2026-04-27 11:37:22] 2026-04-27 09:36:18,696 | INFO     | 
[2026-04-27 11:37:22] 2026-04-27 09:36:18,696 | INFO     | pilot is running in a VM
[2026-04-27 11:37:22] 2026-04-27 09:36:18,696 | INFO     | architecture information:
[2026-04-27 11:37:22] 2026-04-27 09:36:18,707 | INFO     | executing command: cat /etc/os-release
[2026-04-27 11:37:22] 2026-04-27 09:36:18,963 | INFO     | cat /etc/os-release:
[2026-04-27 11:37:22] NAME="CentOS Linux"
[2026-04-27 11:37:22] VERSION="7 (Core)"
[2026-04-27 11:37:22] ID="centos"
[2026-04-27 11:37:22] ID_LIKE="rhel fedora"
[2026-04-27 11:37:22] VERSION_ID="7"
[2026-04-27 11:37:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-27 11:37:22] ANSI_COLOR="0;31"
[2026-04-27 11:37:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-27 11:37:22] HOME_URL="https://www.centos.org/"
[2026-04-27 11:37:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-27 11:37:22] 
[2026-04-27 11:37:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-27 11:37:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-27 11:37:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-27 11:37:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-27 11:37:22] 
[2026-04-27 11:37:22] 2026-04-27 09:36:18,964 | INFO     | ***************************************
[2026-04-27 11:37:22] 2026-04-27 09:36:19,467 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2026-04-27 11:37:22] 2026-04-27 09:36:19,671 | INFO     | sufficient remaining disk space (491805212672 B)
[2026-04-27 11:37:22] 2026-04-27 09:36:19,672 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-27 11:37:22] 2026-04-27 09:36:19,672 | INFO     | current server update state: UPDATING_FINAL
[2026-04-27 11:37:22] 2026-04-27 09:36:19,672 | INFO     | update_server=False
[2026-04-27 11:37:22] 2026-04-27 09:36:19,672 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-27 11:37:22] 2026-04-27 09:36:19,923 | INFO     | all job control threads have been joined
[2026-04-27 11:37:22] 2026-04-27 09:36:20,041 | INFO     | all data control threads have been joined
[2026-04-27 11:37:22] 2026-04-27 09:36:20,483 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-27 11:37:22] 2026-04-27 09:36:20,483 | INFO     | aborting loop
[2026-04-27 11:37:22] 2026-04-27 09:36:20,678 | INFO     | [job] retrieve thread has finished
[2026-04-27 11:37:22] 2026-04-27 09:36:20,804 | INFO     | all payload control threads have been joined
[2026-04-27 11:37:22] 2026-04-27 09:36:20,929 | INFO     | [job] control thread has finished
[2026-04-27 11:37:22] 2026-04-27 09:36:21,047 | INFO     | [data] control thread has finished
[2026-04-27 11:37:22] 2026-04-27 09:36:21,069 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-27 11:37:22] 2026-04-27 09:36:21,103 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-27 11:37:22] 2026-04-27 09:36:21,134 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-27 11:37:22] 2026-04-27 09:36:21,205 | INFO     | [data] copytool_in thread has finished
[2026-04-27 11:37:22] 2026-04-27 09:36:21,406 | INFO     | [payload] validate_post thread has finished
[2026-04-27 11:37:22] 2026-04-27 09:36:21,410 | INFO     | [job] create_data_payload thread has finished
[2026-04-27 11:37:22] 2026-04-27 09:36:21,488 | INFO     | [job] job monitor thread has finished
[2026-04-27 11:37:22] 2026-04-27 09:36:21,787 | INFO     | [payload] validate_pre thread has finished
[2026-04-27 11:37:22] 2026-04-27 09:36:21,810 | INFO     | [payload] control thread has finished
[2026-04-27 11:37:22] 2026-04-27 09:36:21,892 | INFO     | [job] validate thread has finished
[2026-04-27 11:37:22] 2026-04-27 09:36:21,903 | INFO     | [payload] execute_payloads thread has finished
[2026-04-27 11:37:22] 2026-04-27 09:36:21,954 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-27 11:37:22] 2026-04-27 09:36:22,084 | INFO     | [payload] failed_post thread has finished
[2026-04-27 11:37:22] 2026-04-27 09:36:22,140 | INFO     | [job] queue monitor thread has finished
[2026-04-27 11:37:22] 2026-04-27 09:36:23,110 | INFO     | [data] copytool_out thread has finished
[2026-04-27 11:37:22] 2026-04-27 09:36:25,963 | INFO     | [data] queue_monitor thread has finished
[2026-04-27 11:37:22] 2026-04-27 09:36:49,142 | INFO     | PID=4813 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-04-27 11:37:22] 2026-04-27 09:36:49,142 | INFO     | .. there are 2 such processes running
[2026-04-27 11:37:22] 2026-04-27 09:36:49,142 | INFO     | found 0 job(s) in 20 queues
[2026-04-27 11:37:22] 2026-04-27 09:36:49,142 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-27 11:37:22] 2026-04-27 09:36:49,142 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-27 11:37:22] 2026-04-27 09:37:09,575 | INFO     | [monitor] cgroup control has ended
[2026-04-27 11:37:22] 2026-04-27 09:37:11,628 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140130789672768)>', '<ExcThread(monitor, started 140130127955712)>']
[2026-04-27 11:37:22] 2026-04-27 09:37:12,282 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-27 11:37:22] 2026-04-27 09:37:12,282 | INFO     | [monitor] control thread has ended
[2026-04-27 11:37:22] 2026-04-27 09:37:16,654 | INFO     | all workflow threads have been joined
[2026-04-27 11:37:22] 2026-04-27 09:37:16,654 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-27 11:37:22] 2026-04-27 09:37:16,654 | INFO     | traces error code: 0
[2026-04-27 11:37:22] 2026-04-27 09:37:16,655 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-27 11:37:22] 2026-04-27 09:37:17,128 [wrapper] ==== pilot stdout END ====
[2026-04-27 11:37:22] 2026-04-27 09:37:17,221 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-27 11:37:22] 2026-04-27 09:37:17,331 [wrapper] pilotpid: 4813
[2026-04-27 11:37:22] 2026-04-27 09:37:17,433 [wrapper] Pilot exit status: 0
[2026-04-27 11:37:22] 2026-04-27 09:37:17,929 [wrapper] pandaids: 7114723835
[2026-04-27 11:37:22] 2026-04-27 09:37:19,045 [wrapper] cleanup supervisor_pilot 17402 4814
[2026-04-27 11:37:22] 2026-04-27 09:37:19,172 [wrapper] Test setup, not cleaning
[2026-04-27 11:37:22] 2026-04-27 09:37:19,267 [wrapper] apfmon messages muted
[2026-04-27 11:37:22] 2026-04-27 09:37:19,392 [wrapper] ==== wrapper stdout END ====
[2026-04-27 11:37:22] 2026-04-27 09:37:19,492 [wrapper] ==== wrapper stderr END ====
[2026-04-27 11:37:22]  *** Error codes and diagnostics ***
[2026-04-27 11:37:22]     "exeErrorCode": 0,
[2026-04-27 11:37:22]     "pilotErrorCode": 0,
[2026-04-27 11:37:22]  *** Listing of results directory ***
[2026-04-27 11:37:22] total 477964
[2026-04-27 11:37:22] -rw-r--r--. 1 boinc boinc    683926 Apr 26 16:58 pilot3.tar.gz
[2026-04-27 11:37:22] -rwx------. 1 boinc boinc     36322 Apr 26 16:59 runpilot2-wrapper.sh
[2026-04-27 11:37:22] -rw-r--r--. 1 boinc boinc      5631 Apr 26 17:02 queuedata.json
[2026-04-27 11:37:22] -rw-r--r--. 1 boinc boinc       100 Apr 27 05:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-27 11:37:22] -rwxr-xr-x. 1 boinc boinc      7986 Apr 27 05:39 run_atlas
[2026-04-27 11:37:22] -rw-r--r--. 1 boinc boinc       105 Apr 27 05:39 job.xml
[2026-04-27 11:37:22] -rw-r--r--. 2 boinc boinc 264585457 Apr 27 05:39 EVNT.49863876._000010.pool.root.1
[2026-04-27 11:37:22] -rw-r--r--. 1 boinc boinc      6306 Apr 27 05:39 init_data.xml
[2026-04-27 11:37:22] -rw-r--r--. 2 boinc boinc     15667 Apr 27 05:39 start_atlas.sh
[2026-04-27 11:37:22] drwxrwx--x. 2 boinc boinc        68 Apr 27 05:39 shared
[2026-04-27 11:37:22] -rw-r--r--. 2 boinc boinc    697404 Apr 27 05:39 input.tar.gz
[2026-04-27 11:37:22] -rw-r--r--. 1 boinc boinc         0 Apr 27 05:39 boinc_lockfile
[2026-04-27 11:37:22] -rw-r--r--. 1 boinc boinc      2572 Apr 27 05:39 pandaJob.out
[2026-04-27 11:37:22] -rw-------. 1 boinc boinc       415 Apr 27 05:46 workernode_map.json
[2026-04-27 11:37:22] -rw-------. 1 boinc boinc    997530 Apr 27 05:46 agis_schedconf.cvmfs.json
[2026-04-27 11:37:22] drwx------. 5 boinc boinc      4096 Apr 27 05:46 pilot3
[2026-04-27 11:37:22] -rw-------. 1 boinc boinc 215950727 Apr 27 11:34 HITS.49863879._000077.pool.root.1
[2026-04-27 11:37:22] -rw-r--r--. 1 boinc boinc       489 Apr 27 11:35 boinc_task_state.xml
[2026-04-27 11:37:22] -rw-------. 1 boinc boinc        95 Apr 27 11:36 pilot_heartbeat.json
[2026-04-27 11:37:22] -rw-------. 1 boinc boinc      1012 Apr 27 11:36 memory_monitor_summary.json
[2026-04-27 11:37:22] -rw-------. 1 boinc boinc   1509089 Apr 27 11:36 agis_ddmendpoints.agis.ALL.json
[2026-04-27 11:37:22] -rw-------. 1 boinc boinc    442341 Apr 27 11:36 log.49863879._000077.job.log.tgz.1
[2026-04-27 11:37:22] -rw-------. 1 boinc boinc      6327 Apr 27 11:36 heartbeat_new.json
[2026-04-27 11:37:22] -rw-------. 1 boinc boinc      6218 Apr 27 11:36 heartbeat.json
[2026-04-27 11:37:22] -rw-r--r--. 1 boinc boinc      8192 Apr 27 11:37 boinc_mmap_file
[2026-04-27 11:37:22] -rw-r--r--. 1 boinc boinc        28 Apr 27 11:37 wrapper_checkpoint.txt
[2026-04-27 11:37:22] -rw-------. 1 boinc boinc      4882 Apr 27 11:37 pilotlog.txt
[2026-04-27 11:37:22] -rw-------. 1 boinc boinc   1945581 Apr 27 11:37 log.49863879._000077.job.log.1
[2026-04-27 11:37:22] -rw-------. 1 boinc boinc       357 Apr 27 11:37 output.list
[2026-04-27 11:37:22] -rw-r--r--. 1 boinc boinc       410 Apr 27 11:37 runtime_log
[2026-04-27 11:37:22] -rw-------. 1 boinc boinc   2406400 Apr 27 11:37 result.tar.gz
[2026-04-27 11:37:22] -rw-r--r--. 1 boinc boinc      8439 Apr 27 11:37 runtime_log.err
[2026-04-27 11:37:22] -rw-------. 1 boinc boinc       656 Apr 27 11:37 283cd8bdef9b.diag
[2026-04-27 11:37:22] -rw-r--r--. 1 boinc boinc     20562 Apr 27 11:37 stderr.txt
[2026-04-27 11:37:22] HITS file was successfully produced:
[2026-04-27 11:37:22] -rw-------. 1 boinc boinc 215950727 Apr 27 11:34 shared/HITS.pool.root.1
[2026-04-27 11:37:22]  *** Contents of shared directory: ***
[2026-04-27 11:37:22] total 472332
[2026-04-27 11:37:22] -rw-r--r--. 2 boinc boinc 264585457 Apr 27 05:39 ATLAS.root_0
[2026-04-27 11:37:22] -rw-r--r--. 2 boinc boinc     15667 Apr 27 05:39 start_atlas.sh
[2026-04-27 11:37:22] -rw-r--r--. 2 boinc boinc    697404 Apr 27 05:39 input.tar.gz
[2026-04-27 11:37:22] -rw-------. 1 boinc boinc 215950727 Apr 27 11:34 HITS.pool.root.1
[2026-04-27 11:37:22] -rw-------. 1 boinc boinc   2406400 Apr 27 11:37 result.tar.gz
11:37:24 (813): run_atlas exited; CPU time 78935.910516
11:37:24 (813): called boinc_finish(0)

</stderr_txt>
]]>

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