Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:37:12 (2832897): wrapper (7.7.26015): starting
09:37:12 (2832897): wrapper: running run_atlas (--nthreads 4)
[2026-04-29 09:37:12] Arguments: --nthreads 4
[2026-04-29 09:37:12] Threads: 4
[2026-04-29 09:37:12] Checking for CVMFS
[2026-04-29 09:37:12] No cvmfs_config command found, will try listing directly
[2026-04-29 09:37:12] CVMFS is ok
[2026-04-29 09:37:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-29 09:37:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-29 09:37:12] Further information can be found at the LHC@home message board.
[2026-04-29 09:37:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-29 09:37:12] Checking for apptainer binary...
[2026-04-29 09:37:12] which: no apptainer in ((null))
[2026-04-29 09:37:12] apptainer is not installed, using version from CVMFS
[2026-04-29 09:37:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-29 09:37:12] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot80/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2026-04-29 09:37:12] apptainer works
[2026-04-29 09:37:12] Set ATHENA_PROC_NUMBER=4
[2026-04-29 09:37:12] Set ATHENA_CORE_NUMBER=4
[2026-04-29 09:37:12] Starting ATLAS job with PandaID=7114619233
[2026-04-29 09:37:12] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot80/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-29 12:40:15]  *** The last 200 lines of the pilot log: ***
[2026-04-29 12:40:15] 2026-04-29 10:39:17,301 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-29 12:40:15] 2026-04-29 10:39:17,301 | INFO     | log transfer has been attempted: DONE
[2026-04-29 12:40:15] 2026-04-29 10:39:17,301 | INFO     | job 7114619233 has finished - writing final server update
[2026-04-29 12:40:15] 2026-04-29 10:39:17,301 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1264221/.job.ad'
[2026-04-29 12:40:15] 2026-04-29 10:39:17,302 | INFO     | total number of processed events: 400 (read)
[2026-04-29 12:40:15] 2026-04-29 10:39:17,327 | INFO     | using path: /var/lib/boinc/var/slot80/slots/1/PanDA_Pilot-7114619233/memory_monitor_summary.json (trf name=prmon)
[2026-04-29 12:40:15] 2026-04-29 10:39:17,327 | INFO     | extracted standard info from prmon json
[2026-04-29 12:40:15] 2026-04-29 10:39:17,327 | INFO     | extracted standard memory fields from prmon json
[2026-04-29 12:40:15] 2026-04-29 10:39:17,328 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-29 12:40:15] 2026-04-29 10:39:17,328 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-29 12:40:15] 2026-04-29 10:39:17,331 | INFO     | fitting pss+swap vs Time
[2026-04-29 12:40:15] 2026-04-29 10:39:17,332 | INFO     | sum of square deviations: 1748737904.5
[2026-04-29 12:40:15] 2026-04-29 10:39:17,333 | INFO     | sum of deviations: 4710149587.000002
[2026-04-29 12:40:15] 2026-04-29 10:39:17,333 | INFO     | mean x (centered): 0.0
[2026-04-29 12:40:15] 2026-04-29 10:39:17,333 | INFO     | mean y: 2349052.3483146066
[2026-04-29 12:40:15] 2026-04-29 10:39:17,333 | INFO     | intersect: 2349052.3483146066
[2026-04-29 12:40:15] 2026-04-29 10:39:17,334 | INFO     | chi2: 1.5127665208817143
[2026-04-29 12:40:15] 2026-04-29 10:39:17,334 | INFO     | sum of square deviations: 1605470102.0
[2026-04-29 12:40:15] 2026-04-29 10:39:17,335 | INFO     | sum of deviations: 4523980271.000004
[2026-04-29 12:40:15] 2026-04-29 10:39:17,335 | INFO     | mean x (centered): 0.0
[2026-04-29 12:40:15] 2026-04-29 10:39:17,335 | INFO     | mean y: 2348856.1098265895
[2026-04-29 12:40:15] 2026-04-29 10:39:17,335 | INFO     | intersect: 2348856.1098265895
[2026-04-29 12:40:15] 2026-04-29 10:39:17,336 | INFO     | chi2: 1.5132167576589906
[2026-04-29 12:40:15] 2026-04-29 10:39:17,336 | INFO     | current chi2=1.5132167576589906 (change=-0.029762476301621987 %)
[2026-04-29 12:40:15] 2026-04-29 10:39:17,336 | INFO     | right removable region: 172
[2026-04-29 12:40:15] 2026-04-29 10:39:17,336 | INFO     | sum of square deviations: 1605470102.0
[2026-04-29 12:40:15] 2026-04-29 10:39:17,337 | INFO     | sum of deviations: -19092562874.000004
[2026-04-29 12:40:15] 2026-04-29 10:39:17,337 | INFO     | mean x (centered): 0.0
[2026-04-29 12:40:15] 2026-04-29 10:39:17,338 | INFO     | mean y: 2374019.7803468206
[2026-04-29 12:40:15] 2026-04-29 10:39:17,338 | INFO     | intersect: 2374019.7803468206
[2026-04-29 12:40:15] 2026-04-29 10:39:17,338 | INFO     | chi2: 0.0781478520450579
[2026-04-29 12:40:15] 2026-04-29 10:39:17,338 | INFO     | current chi2=0.0781478520450579 (change=94.83411015736193 %)
[2026-04-29 12:40:15] 2026-04-29 10:39:17,338 | INFO     | sum of square deviations: 1470248962.0
[2026-04-29 12:40:15] 2026-04-29 10:39:17,340 | INFO     | sum of deviations: -16668216572.0
[2026-04-29 12:40:15] 2026-04-29 10:39:17,340 | INFO     | mean x (centered): 0.0
[2026-04-29 12:40:15] 2026-04-29 10:39:17,340 | INFO     | mean y: 2371259.75
[2026-04-29 12:40:15] 2026-04-29 10:39:17,340 | INFO     | intersect: 2371259.75
[2026-04-29 12:40:15] 2026-04-29 10:39:17,340 | INFO     | chi2: 0.07380721654293446
[2026-04-29 12:40:15] 2026-04-29 10:39:17,340 | INFO     | current chi2=0.07380721654293446 (change=5.554388749700706 %)
[2026-04-29 12:40:15] 2026-04-29 10:39:17,340 | INFO     | left removable region: 10
[2026-04-29 12:40:15] 2026-04-29 10:39:17,341 | INFO     | sum of square deviations: 1318277740.5
[2026-04-29 12:40:15] 2026-04-29 10:39:17,342 | INFO     | sum of deviations: -16183260685.5
[2026-04-29 12:40:15] 2026-04-29 10:39:17,342 | INFO     | mean x (centered): 0.0
[2026-04-29 12:40:15] 2026-04-29 10:39:17,342 | INFO     | mean y: 2371846.685185185
[2026-04-29 12:40:15] 2026-04-29 10:39:17,342 | INFO     | intersect: 2371846.685185185
[2026-04-29 12:40:15] 2026-04-29 10:39:17,342 | INFO     | chi2: 0.07174927131992181
[2026-04-29 12:40:15] 2026-04-29 10:39:17,342 | INFO     | current memory leak: -12.28 B/s (using 162 data points, chi2=0.07)
[2026-04-29 12:40:15] 2026-04-29 10:39:17,343 | INFO     | could have reported an average CPU frequency of 2688 MHz (10 samples)
[2026-04-29 12:40:15] 2026-04-29 10:39:17,343 | INFO     | ..............................
[2026-04-29 12:40:15] 2026-04-29 10:39:17,343 | INFO     | . Timing measurements:
[2026-04-29 12:40:15] 2026-04-29 10:39:17,343 | INFO     | . get job = 0 s
[2026-04-29 12:40:15] 2026-04-29 10:39:17,344 | INFO     | . initial setup = 13 s
[2026-04-29 12:40:15] 2026-04-29 10:39:17,344 | INFO     | . payload setup = 23 s
[2026-04-29 12:40:15] 2026-04-29 10:39:17,344 | INFO     | . stage-in = 0 s
[2026-04-29 12:40:15] 2026-04-29 10:39:17,344 | INFO     | . payload execution = 10841 s
[2026-04-29 12:40:15] 2026-04-29 10:39:17,344 | INFO     | . stage-out = 1 s
[2026-04-29 12:40:15] 2026-04-29 10:39:17,344 | INFO     | . log creation = 0 s
[2026-04-29 12:40:15] 2026-04-29 10:39:17,344 | INFO     | ..............................
[2026-04-29 12:40:15] 2026-04-29 10:39:17,452 | INFO     | 
[2026-04-29 12:40:15] 2026-04-29 10:39:17,452 | INFO     | job summary report
[2026-04-29 12:40:15] 2026-04-29 10:39:17,452 | INFO     | --------------------------------------------------
[2026-04-29 12:40:15] 2026-04-29 10:39:17,453 | INFO     | PanDA job id: 7114619233
[2026-04-29 12:40:15] 2026-04-29 10:39:17,453 | INFO     | task id: 49860696
[2026-04-29 12:40:15] 2026-04-29 10:39:17,453 | INFO     | errors: (none)
[2026-04-29 12:40:15] 2026-04-29 10:39:17,453 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-29 12:40:15] 2026-04-29 10:39:17,453 | INFO     | pilot state: finished 
[2026-04-29 12:40:15] 2026-04-29 10:39:17,453 | INFO     | transexitcode: 0
[2026-04-29 12:40:15] 2026-04-29 10:39:17,453 | INFO     | exeerrorcode: 0
[2026-04-29 12:40:15] 2026-04-29 10:39:17,453 | INFO     | exeerrordiag: 
[2026-04-29 12:40:15] 2026-04-29 10:39:17,453 | INFO     | exitcode: 0
[2026-04-29 12:40:15] 2026-04-29 10:39:17,453 | INFO     | exitmsg: OK
[2026-04-29 12:40:15] 2026-04-29 10:39:17,454 | INFO     | cpuconsumptiontime: 41379 s
[2026-04-29 12:40:15] 2026-04-29 10:39:17,454 | INFO     | nevents: 400
[2026-04-29 12:40:15] 2026-04-29 10:39:17,454 | INFO     | neventsw: 0
[2026-04-29 12:40:15] 2026-04-29 10:39:17,454 | INFO     | pid: 2842845
[2026-04-29 12:40:15] 2026-04-29 10:39:17,454 | INFO     | pgrp: 2842845
[2026-04-29 12:40:15] 2026-04-29 10:39:17,454 | INFO     | corecount: 4
[2026-04-29 12:40:15] 2026-04-29 10:39:17,454 | INFO     | event service: False
[2026-04-29 12:40:15] 2026-04-29 10:39:17,455 | INFO     | sizes: {0: 2280855, 1: 2282429, 11: 2282457, 10869: 2311956, 10870: 2320976, 10873: 2321032, 10874: 2321354}
[2026-04-29 12:40:15] 2026-04-29 10:39:17,455 | INFO     | --------------------------------------------------
[2026-04-29 12:40:15] 2026-04-29 10:39:17,455 | INFO     | 
[2026-04-29 12:40:15] 2026-04-29 10:39:17,455 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot80/slots/1
[2026-04-29 12:40:15] 2026-04-29 10:39:17,492 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-29 12:40:15] 2026-04-29 10:39:17,493 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-29 12:40:15] 2026-04-29 10:39:17,493 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-29 12:40:15] 2026-04-29 10:39:17,493 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-29 12:40:15] 2026-04-29 10:39:17,493 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-29 12:40:15] 2026-04-29 10:39:17,493 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-29 12:40:15] 2026-04-29 10:39:17,493 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-29 12:40:15] 2026-04-29 10:39:17,493 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-29 12:40:15] 2026-04-29 10:39:17,494 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-29 12:40:15] 2026-04-29 10:39:17,494 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-29 12:40:15] 2026-04-29 10:39:17,494 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-29 12:40:15] 2026-04-29 10:39:17,494 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-29 12:40:15] 2026-04-29 10:39:17,494 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-29 12:40:15] 2026-04-29 10:39:17,494 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-29 12:40:15] 2026-04-29 10:39:17,494 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-29 12:40:15] 2026-04-29 10:39:17,495 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-29 12:40:15] 2026-04-29 10:39:17,495 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-29 12:40:15] 2026-04-29 10:39:17,495 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-29 12:40:15] 2026-04-29 10:39:17,495 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-29 12:40:15] 2026-04-29 10:39:17,495 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-29 12:40:15] 2026-04-29 10:39:17,495 | INFO     | job 7114619233 has completed (purged errors)
[2026-04-29 12:40:15] 2026-04-29 10:39:17,495 | INFO     | overall cleanup function is called
[2026-04-29 12:40:15] 2026-04-29 10:39:18,216 | WARNING  | process 2842845 can no longer be monitored (due to stat problems) - aborting
[2026-04-29 12:40:15] 2026-04-29 10:39:18,519 | INFO     | --- collectZombieJob: --- 10, [2842845]
[2026-04-29 12:40:15] 2026-04-29 10:39:18,519 | INFO     | zombie collector waiting for pid 2842845
[2026-04-29 12:40:15] 2026-04-29 10:39:18,520 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-29 12:40:15] 2026-04-29 10:39:18,520 | INFO     | collected zombie processes
[2026-04-29 12:40:15] 2026-04-29 10:39:18,520 | INFO     | will attempt to kill all subprocesses of pid=2842845
[2026-04-29 12:40:15] 2026-04-29 10:39:19,310 | INFO     | using path: /var/lib/boinc/var/slot80/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-04-29 12:40:15] 2026-04-29 10:39:19,311 | INFO     | using path: /var/lib/boinc/var/slot80/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-04-29 12:40:15] 2026-04-29 10:39:19,312 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-04-29 12:40:15] 2026-04-29 10:39:19,312 | WARNING  | maxPSS not found in memory monitor output
[2026-04-29 12:40:15] 2026-04-29 10:39:20,465 | INFO     | process IDs to be killed: [2842845] (in reverse order)
[2026-04-29 12:40:15] 2026-04-29 10:39:20,748 | INFO     | number of running child processes to parent process 2842845: 1
[2026-04-29 12:40:15] 2026-04-29 10:39:20,748 | INFO     | maximum number of monitored processes: 6
[2026-04-29 12:40:15] 2026-04-29 10:39:20,749 | INFO     | aborting job monitoring since job object (job id=7114619233) has expired
[2026-04-29 12:40:15] 2026-04-29 10:39:20,825 | WARNING  | found no corresponding commands to process id(s)
[2026-04-29 12:40:15] 2026-04-29 10:39:20,826 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-29 12:40:15] 2026-04-29 10:39:20,857 | INFO     | did not find any defunct processes belonging to 2842845
[2026-04-29 12:40:15] 2026-04-29 10:39:20,883 | INFO     | did not find any defunct processes belonging to 2842845
[2026-04-29 12:40:15] 2026-04-29 10:39:20,883 | INFO     | Ready for new job
[2026-04-29 12:40:15] 2026-04-29 10:39:20,885 | INFO     | ***************************************
[2026-04-29 12:40:15] 2026-04-29 10:39:20,886 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-29 12:40:15] 2026-04-29 10:39:20,886 | INFO     | ***************************************
[2026-04-29 12:40:15] 2026-04-29 10:39:20,886 | INFO     | 
[2026-04-29 12:40:15] 2026-04-29 10:39:20,894 | INFO     | architecture information:
[2026-04-29 12:40:15] 2026-04-29 10:39:20,894 | INFO     | executing command: cat /etc/os-release
[2026-04-29 12:40:15] 2026-04-29 10:39:20,915 | INFO     | cat /etc/os-release:
[2026-04-29 12:40:15] NAME="CentOS Linux"
[2026-04-29 12:40:15] VERSION="7 (Core)"
[2026-04-29 12:40:15] ID="centos"
[2026-04-29 12:40:15] ID_LIKE="rhel fedora"
[2026-04-29 12:40:15] VERSION_ID="7"
[2026-04-29 12:40:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-29 12:40:15] ANSI_COLOR="0;31"
[2026-04-29 12:40:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-29 12:40:15] HOME_URL="https://www.centos.org/"
[2026-04-29 12:40:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-29 12:40:15] 
[2026-04-29 12:40:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-29 12:40:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-29 12:40:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-29 12:40:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-29 12:40:15] 
[2026-04-29 12:40:15] 2026-04-29 10:39:20,915 | INFO     | ***************************************
[2026-04-29 12:40:15] 2026-04-29 10:39:21,418 | INFO     | executing command: df -mP /var/lib/boinc/var/slot80/slots/1
[2026-04-29 12:40:15] 2026-04-29 10:39:21,442 | INFO     | sufficient remaining disk space (38319161344 B)
[2026-04-29 12:40:15] 2026-04-29 10:39:21,445 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-29 12:40:15] 2026-04-29 10:39:21,446 | INFO     | current server update state: UPDATING_FINAL
[2026-04-29 12:40:15] 2026-04-29 10:39:21,446 | INFO     | update_server=False
[2026-04-29 12:40:15] 2026-04-29 10:39:21,446 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-29 12:40:15] 2026-04-29 10:39:21,446 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-29 12:40:15] 2026-04-29 10:39:21,447 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-29 12:40:15] 2026-04-29 10:39:21,447 | INFO     | will abort loop
[2026-04-29 12:40:15] 2026-04-29 10:39:21,731 | INFO     | all job control threads have been joined
[2026-04-29 12:40:15] 2026-04-29 10:39:21,825 | INFO     | all data control threads have been joined
[2026-04-29 12:40:15] 2026-04-29 10:39:21,982 | INFO     | all payload control threads have been joined
[2026-04-29 12:40:15] 2026-04-29 10:39:22,372 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-29 12:40:15] 2026-04-29 10:39:22,451 | INFO     | [job] retrieve thread has finished
[2026-04-29 12:40:15] 2026-04-29 10:39:22,452 | INFO     | [job] job monitor thread has finished
[2026-04-29 12:40:15] 2026-04-29 10:39:22,462 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-29 12:40:15] 2026-04-29 10:39:22,682 | INFO     | [job] validate thread has finished
[2026-04-29 12:40:15] 2026-04-29 10:39:22,723 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-29 12:40:15] 2026-04-29 10:39:22,736 | INFO     | [job] control thread has finished
[2026-04-29 12:40:15] 2026-04-29 10:39:22,804 | INFO     | [data] copytool_in thread has finished
[2026-04-29 12:40:15] 2026-04-29 10:39:22,830 | INFO     | [data] control thread has finished
[2026-04-29 12:40:15] 2026-04-29 10:39:22,987 | INFO     | [payload] control thread has finished
[2026-04-29 12:40:15] 2026-04-29 10:39:22,988 | INFO     | [job] create_data_payload thread has finished
[2026-04-29 12:40:15] 2026-04-29 10:39:23,126 | INFO     | [payload] execute_payloads thread has finished
[2026-04-29 12:40:15] 2026-04-29 10:39:23,304 | INFO     | [payload] validate_pre thread has finished
[2026-04-29 12:40:15] 2026-04-29 10:39:23,453 | INFO     | [data] copytool_out thread has finished
[2026-04-29 12:40:15] 2026-04-29 10:39:23,468 | INFO     | [job] queue monitor thread has finished
[2026-04-29 12:40:15] 2026-04-29 10:39:23,936 | INFO     | [payload] validate_post thread has finished
[2026-04-29 12:40:15] 2026-04-29 10:39:24,014 | INFO     | [payload] failed_post thread has finished
[2026-04-29 12:40:15] 2026-04-29 10:39:26,379 | INFO     | [data] queue_monitor thread has finished
[2026-04-29 12:40:15] 2026-04-29 10:39:50,635 | INFO     | PID=2837397 has CPU usage=14.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-29 12:40:15] 2026-04-29 10:39:50,636 | INFO     | .. there are 23 such processes running
[2026-04-29 12:40:15] 2026-04-29 10:39:50,637 | INFO     | found 0 job(s) in 20 queues
[2026-04-29 12:40:15] 2026-04-29 10:39:50,637 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-29 12:40:15] 2026-04-29 10:39:50,638 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-29 12:40:15] 2026-04-29 10:40:09,314 | INFO     | [monitor] cgroup control has ended
[2026-04-29 12:40:15] 2026-04-29 10:40:10,422 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22504728803136)>', '<ExcThread(monitor, started 22504497501952)>']
[2026-04-29 12:40:15] 2026-04-29 10:40:10,737 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-29 12:40:15] 2026-04-29 10:40:10,737 | INFO     | [monitor] control thread has ended
[2026-04-29 12:40:15] 2026-04-29 10:40:15,432 | INFO     | all workflow threads have been joined
[2026-04-29 12:40:15] 2026-04-29 10:40:15,433 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-29 12:40:15] 2026-04-29 10:40:15,433 | INFO     | traces error code: 0
[2026-04-29 12:40:15] 2026-04-29 10:40:15,433 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-29 12:40:15] 2026-04-29 10:40:15,593 [wrapper] ==== pilot stdout END ====
[2026-04-29 12:40:15] 2026-04-29 10:40:15,598 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-29 12:40:15] 2026-04-29 10:40:15,602 [wrapper] pilotpid: 2837397
[2026-04-29 12:40:15] 2026-04-29 10:40:15,606 [wrapper] Pilot exit status: 0
[2026-04-29 12:40:15] 2026-04-29 10:40:15,623 [wrapper] pandaids: 7114619233
[2026-04-29 12:40:15] 2026-04-29 10:40:15,846 [wrapper] cleanup supervisor_pilot 3235227 2837398
[2026-04-29 12:40:15] 2026-04-29 10:40:15,852 [wrapper] Test setup, not cleaning
[2026-04-29 12:40:15] 2026-04-29 10:40:15,857 [wrapper] apfmon messages muted
[2026-04-29 12:40:15] 2026-04-29 10:40:15,860 [wrapper] ==== wrapper stdout END ====
[2026-04-29 12:40:15] 2026-04-29 10:40:15,865 [wrapper] ==== wrapper stderr END ====
[2026-04-29 12:40:15]  *** Error codes and diagnostics ***
[2026-04-29 12:40:15]     "exeErrorCode": 0,
[2026-04-29 12:40:15]     "pilotErrorCode": 0,
[2026-04-29 12:40:15]  *** Listing of results directory ***
[2026-04-29 12:40:15] total 480868
[2026-04-29 12:40:15] -rw-r--r--. 1 boinc boinc    683926 Apr 26 15:53 pilot3.tar.gz
[2026-04-29 12:40:15] -rwx------. 1 boinc boinc     36322 Apr 26 15:55 runpilot2-wrapper.sh
[2026-04-29 12:40:15] -rw-r--r--. 1 boinc boinc      5631 Apr 26 16:04 queuedata.json
[2026-04-29 12:40:15] -rw-r--r--. 1 boinc boinc       100 Apr 29 09:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-29 12:40:15] -rwxr-xr-x. 1 boinc boinc      7986 Apr 29 09:37 run_atlas
[2026-04-29 12:40:15] -rw-r--r--. 1 boinc boinc       105 Apr 29 09:37 job.xml
[2026-04-29 12:40:15] -rw-r--r--. 2 boinc boinc 302873215 Apr 29 09:37 EVNT.48751990._000002.pool.root.1
[2026-04-29 12:40:15] -rw-r--r--. 1 boinc boinc      6539 Apr 29 09:37 init_data.xml
[2026-04-29 12:40:15] drwxrwx--x. 2 boinc boinc      4096 Apr 29 09:37 shared
[2026-04-29 12:40:15] -rw-r--r--. 2 boinc boinc    697391 Apr 29 09:37 input.tar.gz
[2026-04-29 12:40:15] -rw-r--r--. 2 boinc boinc     15667 Apr 29 09:37 start_atlas.sh
[2026-04-29 12:40:15] -rw-r--r--. 1 boinc boinc         0 Apr 29 09:37 boinc_lockfile
[2026-04-29 12:40:15] -rw-r--r--. 1 boinc boinc      2519 Apr 29 09:37 pandaJob.out
[2026-04-29 12:40:15] -rw-------. 1 boinc boinc   1001050 Apr 29 09:37 agis_schedconf.cvmfs.json
[2026-04-29 12:40:15] -rw-------. 1 boinc boinc       442 Apr 29 09:37 workernode_map.json
[2026-04-29 12:40:15] drwx------. 5 boinc boinc      4096 Apr 29 09:37 pilot3
[2026-04-29 12:40:15] -rw-------. 1 boinc boinc 182748824 Apr 29 12:38 HITS.49860696._000042.pool.root.1
[2026-04-29 12:40:15] -rw-r--r--. 1 boinc boinc       486 Apr 29 12:38 boinc_task_state.xml
[2026-04-29 12:40:15] -rw-------. 1 boinc boinc      1029 Apr 29 12:39 memory_monitor_summary.json
[2026-04-29 12:40:15] -rw-------. 1 boinc boinc   1512704 Apr 29 12:39 agis_ddmendpoints.agis.ALL.json
[2026-04-29 12:40:15] -rw-------. 1 boinc boinc    308941 Apr 29 12:39 log.49860696._000042.job.log.tgz.1
[2026-04-29 12:40:15] -rw-------. 1 boinc boinc      6365 Apr 29 12:39 heartbeat_new.json
[2026-04-29 12:40:15] -rw-------. 1 boinc boinc      6256 Apr 29 12:39 heartbeat.json
[2026-04-29 12:40:15] -rw-------. 1 boinc boinc        95 Apr 29 12:39 pilot_heartbeat.json
[2026-04-29 12:40:15] -rw-r--r--. 1 boinc boinc      8192 Apr 29 12:40 boinc_mmap_file
[2026-04-29 12:40:15] -rw-r--r--. 1 boinc boinc        27 Apr 29 12:40 wrapper_checkpoint.txt
[2026-04-29 12:40:15] -rw-------. 1 boinc boinc      4835 Apr 29 12:40 pilotlog.txt
[2026-04-29 12:40:15] -rw-------. 1 boinc boinc   1011622 Apr 29 12:40 log.49860696._000042.job.log.1
[2026-04-29 12:40:15] -rw-------. 1 boinc boinc       357 Apr 29 12:40 output.list
[2026-04-29 12:40:15] -rw-r--r--. 1 boinc boinc       410 Apr 29 12:40 runtime_log
[2026-04-29 12:40:15] -rw-------. 1 boinc boinc   1341440 Apr 29 12:40 result.tar.gz
[2026-04-29 12:40:15] -rw-r--r--. 1 boinc boinc      8828 Apr 29 12:40 runtime_log.err
[2026-04-29 12:40:15] -rw-------. 1 boinc boinc       665 Apr 29 12:40 1937bd49d495.diag
[2026-04-29 12:40:15] -rw-r--r--. 1 boinc boinc     21114 Apr 29 12:40 stderr.txt
[2026-04-29 12:40:16] HITS file was successfully produced:
[2026-04-29 12:40:16] -rw-------. 1 boinc boinc 182748824 Apr 29 12:38 shared/HITS.pool.root.1
[2026-04-29 12:40:16]  *** Contents of shared directory: ***
[2026-04-29 12:40:16] total 476264
[2026-04-29 12:40:16] -rw-r--r--. 2 boinc boinc 302873215 Apr 29 09:37 ATLAS.root_0
[2026-04-29 12:40:16] -rw-r--r--. 2 boinc boinc    697391 Apr 29 09:37 input.tar.gz
[2026-04-29 12:40:16] -rw-r--r--. 2 boinc boinc     15667 Apr 29 09:37 start_atlas.sh
[2026-04-29 12:40:16] -rw-------. 1 boinc boinc 182748824 Apr 29 12:38 HITS.pool.root.1
[2026-04-29 12:40:16] -rw-------. 1 boinc boinc   1341440 Apr 29 12:40 result.tar.gz
12:40:17 (2832897): run_atlas exited; CPU time 42073.518433
12:40:17 (2832897): called boinc_finish(0)

</stderr_txt>
]]>

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