Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:26:15 (314426): wrapper (7.7.26015): starting
10:26:15 (314426): wrapper: running run_atlas (--nthreads 4)
[2026-04-27 10:26:15] Arguments: --nthreads 4
[2026-04-27 10:26:15] Threads: 4
[2026-04-27 10:26:15] Checking for CVMFS
[2026-04-27 10:26:15] No cvmfs_config command found, will try listing directly
[2026-04-27 10:26:15] CVMFS is ok
[2026-04-27 10:26:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-27 10:26:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-27 10:26:15] Further information can be found at the LHC@home message board.
[2026-04-27 10:26:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-27 10:26:15] Checking for apptainer binary...
[2026-04-27 10:26:15] which: no apptainer in ((null))
[2026-04-27 10:26:15] apptainer is not installed, using version from CVMFS
[2026-04-27 10:26:15] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-27 10:26:16] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot52/slots/3/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2026-04-27 10:26:16] apptainer works
[2026-04-27 10:26:16] Set ATHENA_PROC_NUMBER=4
[2026-04-27 10:26:16] Set ATHENA_CORE_NUMBER=4
[2026-04-27 10:26:16] Starting ATLAS job with PandaID=7114701118
[2026-04-27 10:26:16] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot52/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-27 13:39:27]  *** The last 200 lines of the pilot log: ***
[2026-04-27 13:39:27] 2026-04-27 11:38:36,048 | INFO     | monitor loop #793: job 0:7114701118 is in state 'finished'
[2026-04-27 13:39:27] 2026-04-27 11:38:36,048 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-27 13:39:27] 2026-04-27 11:38:36,253 | INFO     | job 7114701118 has state=finished
[2026-04-27 13:39:27] 2026-04-27 11:38:36,254 | INFO     | preparing for final server update for job 7114701118 in state='finished'
[2026-04-27 13:39:27] 2026-04-27 11:38:36,254 | INFO     | reading metadata from: /var/lib/boinc/var/slot52/slots/3/PanDA_Pilot-7114701118/jobReport.json
[2026-04-27 13:39:27] 2026-04-27 11:38:36,257 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot52/slots/3/workernode_map.json
[2026-04-27 13:39:27] 2026-04-27 11:38:36,257 | INFO     | this job has now completed (state=finished)
[2026-04-27 13:39:27] 2026-04-27 11:38:36,257 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-27 13:39:27] 2026-04-27 11:38:36,257 | INFO     | log transfer has been attempted: DONE
[2026-04-27 13:39:27] 2026-04-27 11:38:36,258 | INFO     | job 7114701118 has finished - writing final server update
[2026-04-27 13:39:27] 2026-04-27 11:38:36,258 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3162254/.job.ad'
[2026-04-27 13:39:27] 2026-04-27 11:38:36,258 | INFO     | total number of processed events: 400 (read)
[2026-04-27 13:39:27] 2026-04-27 11:38:36,281 | INFO     | using path: /var/lib/boinc/var/slot52/slots/3/PanDA_Pilot-7114701118/memory_monitor_summary.json (trf name=prmon)
[2026-04-27 13:39:27] 2026-04-27 11:38:36,281 | INFO     | extracted standard info from prmon json
[2026-04-27 13:39:27] 2026-04-27 11:38:36,282 | INFO     | extracted standard memory fields from prmon json
[2026-04-27 13:39:27] 2026-04-27 11:38:36,282 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-27 13:39:27] 2026-04-27 11:38:36,282 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-27 13:39:27] 2026-04-27 11:38:36,285 | INFO     | fitting pss+swap vs Time
[2026-04-27 13:39:27] 2026-04-27 11:38:36,285 | INFO     | sum of square deviations: 2060343747.0
[2026-04-27 13:39:27] 2026-04-27 11:38:36,286 | INFO     | sum of deviations: -14290364317.500002
[2026-04-27 13:39:27] 2026-04-27 11:38:36,287 | INFO     | mean x (centered): 0.0
[2026-04-27 13:39:27] 2026-04-27 11:38:36,287 | INFO     | mean y: 2352676.484042553
[2026-04-27 13:39:27] 2026-04-27 11:38:36,287 | INFO     | intersect: 2352676.484042553
[2026-04-27 13:39:27] 2026-04-27 11:38:36,287 | INFO     | chi2: 1.4932406865186518
[2026-04-27 13:39:27] 2026-04-27 11:38:36,287 | INFO     | sum of square deviations: 1900284932.0
[2026-04-27 13:39:27] 2026-04-27 11:38:36,288 | INFO     | sum of deviations: -13735132832.000004
[2026-04-27 13:39:27] 2026-04-27 11:38:36,289 | INFO     | mean x (centered): 0.0
[2026-04-27 13:39:27] 2026-04-27 11:38:36,289 | INFO     | mean y: 2353205.5956284152
[2026-04-27 13:39:27] 2026-04-27 11:38:36,289 | INFO     | intersect: 2353205.5956284152
[2026-04-27 13:39:27] 2026-04-27 11:38:36,289 | INFO     | chi2: 1.4915513177471202
[2026-04-27 13:39:27] 2026-04-27 11:38:36,289 | INFO     | current chi2=1.4915513177471202 (change=0.11313439198272768 %)
[2026-04-27 13:39:27] 2026-04-27 11:38:36,289 | INFO     | right removable region: 182
[2026-04-27 13:39:27] 2026-04-27 11:38:36,289 | INFO     | sum of square deviations: 1900284932.0
[2026-04-27 13:39:27] 2026-04-27 11:38:36,290 | INFO     | sum of deviations: -34998093030.0
[2026-04-27 13:39:27] 2026-04-27 11:38:36,291 | INFO     | mean x (centered): 0.0
[2026-04-27 13:39:27] 2026-04-27 11:38:36,291 | INFO     | mean y: 2372051.1857923497
[2026-04-27 13:39:27] 2026-04-27 11:38:36,291 | INFO     | intersect: 2372051.1857923497
[2026-04-27 13:39:27] 2026-04-27 11:38:36,291 | INFO     | chi2: 0.1754609978869344
[2026-04-27 13:39:27] 2026-04-27 11:38:36,291 | INFO     | current chi2=0.1754609978869344 (change=88.24965061084661 %)
[2026-04-27 13:39:27] 2026-04-27 11:38:36,291 | INFO     | sum of square deviations: 1748737904.5
[2026-04-27 13:39:27] 2026-04-27 11:38:36,292 | INFO     | sum of deviations: -27064434951.5
[2026-04-27 13:39:27] 2026-04-27 11:38:36,293 | INFO     | mean x (centered): 0.0
[2026-04-27 13:39:27] 2026-04-27 11:38:36,293 | INFO     | mean y: 2364046.084269663
[2026-04-27 13:39:27] 2026-04-27 11:38:36,293 | INFO     | intersect: 2364046.084269663
[2026-04-27 13:39:27] 2026-04-27 11:38:36,293 | INFO     | chi2: 0.14186826413071563
[2026-04-27 13:39:27] 2026-04-27 11:38:36,293 | INFO     | current chi2=0.14186826413071563 (change=19.145413602324115 %)
[2026-04-27 13:39:27] 2026-04-27 11:38:36,293 | INFO     | left removable region: 10
[2026-04-27 13:39:27] 2026-04-27 11:38:36,293 | INFO     | sum of square deviations: 1577789583.0
[2026-04-27 13:39:27] 2026-04-27 11:38:36,294 | INFO     | sum of deviations: -26064012351.000004
[2026-04-27 13:39:27] 2026-04-27 11:38:36,294 | INFO     | mean x (centered): 0.0
[2026-04-27 13:39:27] 2026-04-27 11:38:36,295 | INFO     | mean y: 2365117.395348837
[2026-04-27 13:39:27] 2026-04-27 11:38:36,295 | INFO     | intersect: 2365117.395348837
[2026-04-27 13:39:27] 2026-04-27 11:38:36,295 | INFO     | chi2: 0.1386382954946852
[2026-04-27 13:39:27] 2026-04-27 11:38:36,295 | INFO     | current memory leak: -16.52 B/s (using 172 data points, chi2=0.14)
[2026-04-27 13:39:27] 2026-04-27 11:38:36,295 | INFO     | could have reported an average CPU frequency of 2648 MHz (10 samples)
[2026-04-27 13:39:27] 2026-04-27 11:38:36,296 | INFO     | ..............................
[2026-04-27 13:39:27] 2026-04-27 11:38:36,296 | INFO     | . Timing measurements:
[2026-04-27 13:39:27] 2026-04-27 11:38:36,296 | INFO     | . get job = 0 s
[2026-04-27 13:39:27] 2026-04-27 11:38:36,296 | INFO     | . initial setup = 15 s
[2026-04-27 13:39:27] 2026-04-27 11:38:36,296 | INFO     | . payload setup = 21 s
[2026-04-27 13:39:27] 2026-04-27 11:38:36,296 | INFO     | . stage-in = 0 s
[2026-04-27 13:39:27] 2026-04-27 11:38:36,296 | INFO     | . payload execution = 11451 s
[2026-04-27 13:39:27] 2026-04-27 11:38:36,296 | INFO     | . stage-out = 1 s
[2026-04-27 13:39:27] 2026-04-27 11:38:36,296 | INFO     | . log creation = 0 s
[2026-04-27 13:39:27] 2026-04-27 11:38:36,296 | INFO     | ..............................
[2026-04-27 13:39:27] 2026-04-27 11:38:36,387 | INFO     | 
[2026-04-27 13:39:27] 2026-04-27 11:38:36,388 | INFO     | job summary report
[2026-04-27 13:39:27] 2026-04-27 11:38:36,388 | INFO     | --------------------------------------------------
[2026-04-27 13:39:27] 2026-04-27 11:38:36,388 | INFO     | PanDA job id: 7114701118
[2026-04-27 13:39:27] 2026-04-27 11:38:36,388 | INFO     | task id: 49888948
[2026-04-27 13:39:27] 2026-04-27 11:38:36,388 | INFO     | errors: (none)
[2026-04-27 13:39:27] 2026-04-27 11:38:36,388 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-27 13:39:27] 2026-04-27 11:38:36,388 | INFO     | pilot state: finished 
[2026-04-27 13:39:27] 2026-04-27 11:38:36,388 | INFO     | transexitcode: 0
[2026-04-27 13:39:27] 2026-04-27 11:38:36,388 | INFO     | exeerrorcode: 0
[2026-04-27 13:39:27] 2026-04-27 11:38:36,388 | INFO     | exeerrordiag: 
[2026-04-27 13:39:27] 2026-04-27 11:38:36,388 | INFO     | exitcode: 0
[2026-04-27 13:39:27] 2026-04-27 11:38:36,388 | INFO     | exitmsg: OK
[2026-04-27 13:39:27] 2026-04-27 11:38:36,389 | INFO     | cpuconsumptiontime: 43103 s
[2026-04-27 13:39:27] 2026-04-27 11:38:36,389 | INFO     | nevents: 400
[2026-04-27 13:39:27] 2026-04-27 11:38:36,389 | INFO     | neventsw: 0
[2026-04-27 13:39:27] 2026-04-27 11:38:36,389 | INFO     | pid: 324637
[2026-04-27 13:39:27] 2026-04-27 11:38:36,389 | INFO     | pgrp: 324637
[2026-04-27 13:39:27] 2026-04-27 11:38:36,389 | INFO     | corecount: 4
[2026-04-27 13:39:27] 2026-04-27 11:38:36,389 | INFO     | event service: False
[2026-04-27 13:39:27] 2026-04-27 11:38:36,389 | INFO     | sizes: {0: 2274690, 1: 2276519, 12: 2276519, 11477: 2306436, 11478: 2319063, 11481: 2319119, 11482: 2319441}
[2026-04-27 13:39:27] 2026-04-27 11:38:36,389 | INFO     | --------------------------------------------------
[2026-04-27 13:39:27] 2026-04-27 11:38:36,389 | INFO     | 
[2026-04-27 13:39:27] 2026-04-27 11:38:36,390 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot52/slots/3
[2026-04-27 13:39:27] 2026-04-27 11:38:36,430 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-27 13:39:27] 2026-04-27 11:38:36,430 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-27 13:39:27] 2026-04-27 11:38:36,430 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-27 13:39:27] 2026-04-27 11:38:36,430 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-27 13:39:27] 2026-04-27 11:38:36,430 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-27 13:39:27] 2026-04-27 11:38:36,431 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-27 13:39:27] 2026-04-27 11:38:36,431 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-27 13:39:27] 2026-04-27 11:38:36,431 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-27 13:39:27] 2026-04-27 11:38:36,431 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-27 13:39:27] 2026-04-27 11:38:36,431 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-27 13:39:27] 2026-04-27 11:38:36,431 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-27 13:39:27] 2026-04-27 11:38:36,431 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-27 13:39:27] 2026-04-27 11:38:36,431 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-27 13:39:27] 2026-04-27 11:38:36,431 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-27 13:39:27] 2026-04-27 11:38:36,431 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-27 13:39:27] 2026-04-27 11:38:36,431 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-27 13:39:27] 2026-04-27 11:38:36,432 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-27 13:39:27] 2026-04-27 11:38:36,432 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-27 13:39:27] 2026-04-27 11:38:36,432 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-27 13:39:27] 2026-04-27 11:38:36,432 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-27 13:39:27] 2026-04-27 11:38:36,432 | INFO     | job 7114701118 has completed (purged errors)
[2026-04-27 13:39:27] 2026-04-27 11:38:36,432 | INFO     | overall cleanup function is called
[2026-04-27 13:39:27] 2026-04-27 11:38:37,442 | INFO     | --- collectZombieJob: --- 10, [324637]
[2026-04-27 13:39:27] 2026-04-27 11:38:37,442 | INFO     | zombie collector waiting for pid 324637
[2026-04-27 13:39:27] 2026-04-27 11:38:37,442 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-27 13:39:27] 2026-04-27 11:38:37,442 | INFO     | collected zombie processes
[2026-04-27 13:39:27] 2026-04-27 11:38:37,442 | INFO     | will attempt to kill all subprocesses of pid=324637
[2026-04-27 13:39:27] 2026-04-27 11:38:38,161 | INFO     | process IDs to be killed: [324637] (in reverse order)
[2026-04-27 13:39:27] 2026-04-27 11:38:38,500 | WARNING  | found no corresponding commands to process id(s)
[2026-04-27 13:39:27] 2026-04-27 11:38:38,501 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-27 13:39:27] 2026-04-27 11:38:38,531 | INFO     | did not find any defunct processes belonging to 324637
[2026-04-27 13:39:27] 2026-04-27 11:38:38,558 | INFO     | did not find any defunct processes belonging to 324637
[2026-04-27 13:39:27] 2026-04-27 11:38:38,558 | INFO     | Ready for new job
[2026-04-27 13:39:27] 2026-04-27 11:38:38,560 | INFO     | ***************************************
[2026-04-27 13:39:27] 2026-04-27 11:38:38,560 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-27 13:39:27] 2026-04-27 11:38:38,560 | INFO     | ***************************************
[2026-04-27 13:39:27] 2026-04-27 11:38:38,560 | INFO     | 
[2026-04-27 13:39:27] 2026-04-27 11:38:38,568 | INFO     | architecture information:
[2026-04-27 13:39:27] 2026-04-27 11:38:38,569 | INFO     | executing command: cat /etc/os-release
[2026-04-27 13:39:27] 2026-04-27 11:38:38,591 | INFO     | cat /etc/os-release:
[2026-04-27 13:39:27] NAME="CentOS Linux"
[2026-04-27 13:39:27] VERSION="7 (Core)"
[2026-04-27 13:39:27] ID="centos"
[2026-04-27 13:39:27] ID_LIKE="rhel fedora"
[2026-04-27 13:39:27] VERSION_ID="7"
[2026-04-27 13:39:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-27 13:39:27] ANSI_COLOR="0;31"
[2026-04-27 13:39:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-27 13:39:27] HOME_URL="https://www.centos.org/"
[2026-04-27 13:39:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-27 13:39:27] 
[2026-04-27 13:39:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-27 13:39:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-27 13:39:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-27 13:39:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-27 13:39:27] 
[2026-04-27 13:39:27] 2026-04-27 11:38:38,592 | INFO     | ***************************************
[2026-04-27 13:39:27] 2026-04-27 11:38:39,094 | INFO     | executing command: df -mP /var/lib/boinc/var/slot52/slots/3
[2026-04-27 13:39:27] 2026-04-27 11:38:39,122 | INFO     | sufficient remaining disk space (17798529024 B)
[2026-04-27 13:39:27] 2026-04-27 11:38:39,123 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-27 13:39:27] 2026-04-27 11:38:39,123 | INFO     | current server update state: UPDATING_FINAL
[2026-04-27 13:39:27] 2026-04-27 11:38:39,123 | INFO     | update_server=False
[2026-04-27 13:39:27] 2026-04-27 11:38:39,123 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-27 13:39:27] 2026-04-27 11:38:39,186 | INFO     | all payload control threads have been joined
[2026-04-27 13:39:27] 2026-04-27 11:38:39,558 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-27 13:39:27] 2026-04-27 11:38:39,558 | INFO     | aborting loop
[2026-04-27 13:39:27] 2026-04-27 11:38:39,705 | INFO     | all job control threads have been joined
[2026-04-27 13:39:27] 2026-04-27 11:38:40,128 | INFO     | [job] retrieve thread has finished
[2026-04-27 13:39:27] 2026-04-27 11:38:40,191 | INFO     | [payload] control thread has finished
[2026-04-27 13:39:27] 2026-04-27 11:38:40,214 | INFO     | all data control threads have been joined
[2026-04-27 13:39:27] 2026-04-27 11:38:40,309 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-27 13:39:27] 2026-04-27 11:38:40,563 | INFO     | [job] job monitor thread has finished
[2026-04-27 13:39:27] 2026-04-27 11:38:40,687 | INFO     | [payload] failed_post thread has finished
[2026-04-27 13:39:27] 2026-04-27 11:38:40,710 | INFO     | [job] control thread has finished
[2026-04-27 13:39:27] 2026-04-27 11:38:40,768 | INFO     | [payload] execute_payloads thread has finished
[2026-04-27 13:39:27] 2026-04-27 11:38:40,913 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-27 13:39:27] 2026-04-27 11:38:40,987 | INFO     | [data] copytool_in thread has finished
[2026-04-27 13:39:27] 2026-04-27 11:38:41,186 | INFO     | [payload] validate_pre thread has finished
[2026-04-27 13:39:27] 2026-04-27 11:38:41,219 | INFO     | [data] control thread has finished
[2026-04-27 13:39:27] 2026-04-27 11:38:41,231 | INFO     | [job] create_data_payload thread has finished
[2026-04-27 13:39:27] 2026-04-27 11:38:41,399 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-27 13:39:27] 2026-04-27 11:38:41,464 | INFO     | [payload] validate_post thread has finished
[2026-04-27 13:39:27] 2026-04-27 11:38:41,487 | INFO     | [job] validate thread has finished
[2026-04-27 13:39:27] 2026-04-27 11:38:42,314 | INFO     | [data] copytool_out thread has finished
[2026-04-27 13:39:27] 2026-04-27 11:38:42,404 | INFO     | [job] queue monitor thread has finished
[2026-04-27 13:39:27] 2026-04-27 11:38:44,919 | INFO     | [data] queue_monitor thread has finished
[2026-04-27 13:39:27] 2026-04-27 11:38:49,436 | INFO     | job.realtimelogging is not enabled
[2026-04-27 13:39:27] 2026-04-27 11:38:50,441 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-27 13:39:27] 2026-04-27 11:39:09,736 | INFO     | PID=318978 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-27 13:39:27] 2026-04-27 11:39:09,736 | INFO     | .. there are 23 such processes running
[2026-04-27 13:39:27] 2026-04-27 11:39:09,738 | INFO     | found 0 job(s) in 20 queues
[2026-04-27 13:39:27] 2026-04-27 11:39:09,738 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-27 13:39:27] 2026-04-27 11:39:09,738 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-27 13:39:27] 2026-04-27 11:39:20,869 | INFO     | [monitor] cgroup control has ended
[2026-04-27 13:39:27] 2026-04-27 11:39:21,948 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23092719675200)>', '<ExcThread(monitor, started 23092409624320)>']
[2026-04-27 13:39:27] 2026-04-27 11:39:22,805 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-27 13:39:27] 2026-04-27 11:39:22,805 | INFO     | [monitor] control thread has ended
[2026-04-27 13:39:27] 2026-04-27 11:39:26,973 | INFO     | all workflow threads have been joined
[2026-04-27 13:39:27] 2026-04-27 11:39:26,973 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-27 13:39:27] 2026-04-27 11:39:26,973 | INFO     | traces error code: 0
[2026-04-27 13:39:27] 2026-04-27 11:39:26,973 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-27 13:39:27] 2026-04-27 11:39:27,128 [wrapper] ==== pilot stdout END ====
[2026-04-27 13:39:27] 2026-04-27 11:39:27,133 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-27 13:39:27] 2026-04-27 11:39:27,137 [wrapper] pilotpid: 318978
[2026-04-27 13:39:27] 2026-04-27 11:39:27,141 [wrapper] Pilot exit status: 0
[2026-04-27 13:39:27] 2026-04-27 11:39:27,158 [wrapper] pandaids: 7114701118
[2026-04-27 13:39:27] 2026-04-27 11:39:27,365 [wrapper] cleanup supervisor_pilot  706432 318979
[2026-04-27 13:39:27] 2026-04-27 11:39:27,370 [wrapper] Test setup, not cleaning
[2026-04-27 13:39:27] 2026-04-27 11:39:27,374 [wrapper] apfmon messages muted
[2026-04-27 13:39:27] 2026-04-27 11:39:27,379 [wrapper] ==== wrapper stdout END ====
[2026-04-27 13:39:27] 2026-04-27 11:39:27,383 [wrapper] ==== wrapper stderr END ====
[2026-04-27 13:39:27]  *** Error codes and diagnostics ***
[2026-04-27 13:39:27]     "exeErrorCode": 0,
[2026-04-27 13:39:27]     "pilotErrorCode": 0,
[2026-04-27 13:39:27]  *** Listing of results directory ***
[2026-04-27 13:39:27] total 583764
[2026-04-27 13:39:27] -rwx------. 1 boinc boinc     36322 Apr 26 15:47 runpilot2-wrapper.sh
[2026-04-27 13:39:27] -rw-r--r--. 1 boinc boinc    683926 Apr 26 15:53 pilot3.tar.gz
[2026-04-27 13:39:27] -rw-r--r--. 1 boinc boinc      5631 Apr 26 15:54 queuedata.json
[2026-04-27 13:39:27] -rw-r--r--. 1 boinc boinc       100 Apr 27 10:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-27 13:39:27] -rwxr-xr-x. 1 boinc boinc      7986 Apr 27 10:26 run_atlas
[2026-04-27 13:39:27] -rw-r--r--. 1 boinc boinc       105 Apr 27 10:26 job.xml
[2026-04-27 13:39:27] -rw-r--r--. 1 boinc boinc      6540 Apr 27 10:26 init_data.xml
[2026-04-27 13:39:27] -rw-r--r--. 2 boinc boinc 422518279 Apr 27 10:26 EVNT.49888946._000001.pool.root.1
[2026-04-27 13:39:27] drwxrwx--x. 2 boinc boinc      4096 Apr 27 10:26 shared
[2026-04-27 13:39:27] -rw-r--r--. 2 boinc boinc    697410 Apr 27 10:26 input.tar.gz
[2026-04-27 13:39:27] -rw-r--r--. 2 boinc boinc     15667 Apr 27 10:26 start_atlas.sh
[2026-04-27 13:39:27] -rw-r--r--. 1 boinc boinc         0 Apr 27 10:26 boinc_lockfile
[2026-04-27 13:39:27] -rw-r--r--. 1 boinc boinc      2594 Apr 27 10:26 pandaJob.out
[2026-04-27 13:39:27] -rw-------. 1 boinc boinc    996863 Apr 27 10:26 agis_schedconf.cvmfs.json
[2026-04-27 13:39:27] -rw-------. 1 boinc boinc       443 Apr 27 10:27 workernode_map.json
[2026-04-27 13:39:27] drwx------. 5 boinc boinc      4096 Apr 27 10:27 pilot3
[2026-04-27 13:39:27] -rw-------. 1 boinc boinc 168391764 Apr 27 13:37 HITS.49888948._000008.pool.root.1
[2026-04-27 13:39:27] -rw-r--r--. 1 boinc boinc       488 Apr 27 13:38 boinc_task_state.xml
[2026-04-27 13:39:27] -rw-------. 1 boinc boinc      1030 Apr 27 13:38 memory_monitor_summary.json
[2026-04-27 13:39:27] -rw-------. 1 boinc boinc   1510700 Apr 27 13:38 agis_ddmendpoints.agis.ALL.json
[2026-04-27 13:39:27] -rw-------. 1 boinc boinc    302919 Apr 27 13:38 log.49888948._000008.job.log.tgz.1
[2026-04-27 13:39:27] -rw-------. 1 boinc boinc      6366 Apr 27 13:38 heartbeat_new.json
[2026-04-27 13:39:27] -rw-------. 1 boinc boinc      6257 Apr 27 13:38 heartbeat.json
[2026-04-27 13:39:27] -rw-------. 1 boinc boinc        95 Apr 27 13:39 pilot_heartbeat.json
[2026-04-27 13:39:27] -rw-r--r--. 1 boinc boinc      8192 Apr 27 13:39 boinc_mmap_file
[2026-04-27 13:39:27] -rw-r--r--. 1 boinc boinc        27 Apr 27 13:39 wrapper_checkpoint.txt
[2026-04-27 13:39:27] -rw-------. 1 boinc boinc      4903 Apr 27 13:39 pilotlog.txt
[2026-04-27 13:39:27] -rw-------. 1 boinc boinc   1062900 Apr 27 13:39 log.49888948._000008.job.log.1
[2026-04-27 13:39:27] -rw-------. 1 boinc boinc       357 Apr 27 13:39 output.list
[2026-04-27 13:39:27] -rw-r--r--. 1 boinc boinc       410 Apr 27 13:39 runtime_log
[2026-04-27 13:39:27] -rw-------. 1 boinc boinc   1382400 Apr 27 13:39 result.tar.gz
[2026-04-27 13:39:27] -rw-r--r--. 1 boinc boinc      8828 Apr 27 13:39 runtime_log.err
[2026-04-27 13:39:27] -rw-------. 1 boinc boinc       666 Apr 27 13:39 1781c7de0648.diag
[2026-04-27 13:39:27] -rw-r--r--. 1 boinc boinc     21055 Apr 27 13:39 stderr.txt
[2026-04-27 13:39:27] HITS file was successfully produced:
[2026-04-27 13:39:27] -rw-------. 1 boinc boinc 168391764 Apr 27 13:37 shared/HITS.pool.root.1
[2026-04-27 13:39:27]  *** Contents of shared directory: ***
[2026-04-27 13:39:27] total 579124
[2026-04-27 13:39:27] -rw-r--r--. 2 boinc boinc 422518279 Apr 27 10:26 ATLAS.root_0
[2026-04-27 13:39:27] -rw-r--r--. 2 boinc boinc    697410 Apr 27 10:26 input.tar.gz
[2026-04-27 13:39:27] -rw-r--r--. 2 boinc boinc     15667 Apr 27 10:26 start_atlas.sh
[2026-04-27 13:39:27] -rw-------. 1 boinc boinc 168391764 Apr 27 13:37 HITS.pool.root.1
[2026-04-27 13:39:27] -rw-------. 1 boinc boinc   1382400 Apr 27 13:39 result.tar.gz
13:39:29 (314426): run_atlas exited; CPU time 43754.275547
13:39:29 (314426): called boinc_finish(0)

</stderr_txt>
]]>

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