Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:46:49 (11386): wrapper (7.7.26015): starting
14:46:49 (11386): wrapper: running run_atlas (--nthreads 8)
[2026-04-26 14:46:49] Arguments: --nthreads 8
[2026-04-26 14:46:49] Threads: 8
[2026-04-26 14:46:49] Checking for CVMFS
[2026-04-26 14:46:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-26 14:46:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-26 14:46:53] Running cvmfs_config stat atlas.cern.ch
[2026-04-26 14:46:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-26 14:46:54] 2.11.2.0 31615 15582 99692 158885 3 11 18532262 25165824 96 130560 0 4960634 99.926 4550762 11241 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-26 14:46:54] CVMFS is ok
[2026-04-26 14:46:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-26 14:46:54] Checking for apptainer binary...
[2026-04-26 14:46:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-26 14:46:54] Running /usr/bin/apptainer --version
[2026-04-26 14:46:54] apptainer version 1.3.2-1.el7
[2026-04-26 14:46:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-26 14:47:04] cg-vwn423.simple-grid.lan
[2026-04-26 14:47:04] apptainer works
[2026-04-26 14:47:05] Set ATHENA_PROC_NUMBER=8
[2026-04-26 14:47:05] Set ATHENA_CORE_NUMBER=8
[2026-04-26 14:47:05] Starting ATLAS job with PandaID=7105830130
[2026-04-26 14:47:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-26 20:05:05]  *** The last 200 lines of the pilot log: ***
[2026-04-26 20:05:05] 2026-04-26 18:03:55,841 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-26 20:05:05] 2026-04-26 18:03:55,841 | INFO     | log transfer has been attempted: DONE
[2026-04-26 20:05:05] 2026-04-26 18:03:55,841 | INFO     | job 7105830130 has finished - writing final server update
[2026-04-26 20:05:05] 2026-04-26 18:03:55,842 | INFO     | total number of processed events: 400 (read)
[2026-04-26 20:05:05] 2026-04-26 18:03:55,844 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-7105830130/memory_monitor_summary.json (trf name=prmon)
[2026-04-26 20:05:05] 2026-04-26 18:03:55,844 | INFO     | extracted standard info from prmon json
[2026-04-26 20:05:05] 2026-04-26 18:03:55,845 | INFO     | extracted standard memory fields from prmon json
[2026-04-26 20:05:05] 2026-04-26 18:03:55,845 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-26 20:05:05] 2026-04-26 18:03:55,845 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-26 20:05:05] 2026-04-26 18:03:55,859 | INFO     | fitting pss+swap vs Time
[2026-04-26 20:05:05] 2026-04-26 18:03:55,859 | INFO     | sum of square deviations: 8205826414.5
[2026-04-26 20:05:05] 2026-04-26 18:03:55,863 | INFO     | sum of deviations: 118322531125.00002
[2026-04-26 20:05:05] 2026-04-26 18:03:55,863 | INFO     | mean x (centered): 0.0
[2026-04-26 20:05:05] 2026-04-26 18:03:55,863 | INFO     | mean y: 2453100.523489933
[2026-04-26 20:05:05] 2026-04-26 18:03:55,863 | INFO     | intersect: 2453100.523489933
[2026-04-26 20:05:05] 2026-04-26 18:03:55,864 | INFO     | chi2: 8.733152014258485
[2026-04-26 20:05:05] 2026-04-26 18:03:55,864 | INFO     | sum of square deviations: 7799669962.0
[2026-04-26 20:05:05] 2026-04-26 18:03:55,867 | INFO     | sum of deviations: 136034077362.00017
[2026-04-26 20:05:05] 2026-04-26 18:03:55,868 | INFO     | mean x (centered): 0.0
[2026-04-26 20:05:05] 2026-04-26 18:03:55,868 | INFO     | mean y: 2459649.252559727
[2026-04-26 20:05:05] 2026-04-26 18:03:55,868 | INFO     | intersect: 2459649.252559727
[2026-04-26 20:05:05] 2026-04-26 18:03:55,868 | INFO     | chi2: 8.027235540814122
[2026-04-26 20:05:05] 2026-04-26 18:03:55,868 | INFO     | current chi2=8.027235540814122 (change=8.083180875494026 %)
[2026-04-26 20:05:05] 2026-04-26 18:03:55,869 | INFO     | right removable region: 292
[2026-04-26 20:05:05] 2026-04-26 18:03:55,869 | INFO     | sum of square deviations: 7799669962.0
[2026-04-26 20:05:05] 2026-04-26 18:03:55,872 | INFO     | sum of deviations: 11499136717.999989
[2026-04-26 20:05:05] 2026-04-26 18:03:55,872 | INFO     | mean x (centered): 0.0
[2026-04-26 20:05:05] 2026-04-26 18:03:55,872 | INFO     | mean y: 2493193.877133106
[2026-04-26 20:05:05] 2026-04-26 18:03:55,873 | INFO     | intersect: 2493193.877133106
[2026-04-26 20:05:05] 2026-04-26 18:03:55,873 | INFO     | chi2: 3.5499068750223297
[2026-04-26 20:05:05] 2026-04-26 18:03:55,873 | INFO     | current chi2=3.5499068750223297 (change=59.35136741892902 %)
[2026-04-26 20:05:05] 2026-04-26 18:03:55,879 | INFO     | sum of square deviations: 7407141672.0
[2026-04-26 20:05:05] 2026-04-26 18:03:55,882 | INFO     | sum of deviations: -63013037393.0
[2026-04-26 20:05:05] 2026-04-26 18:03:55,882 | INFO     | mean x (centered): 0.0
[2026-04-26 20:05:05] 2026-04-26 18:03:55,882 | INFO     | mean y: 2522093.6875
[2026-04-26 20:05:05] 2026-04-26 18:03:55,882 | INFO     | intersect: 2522093.6875
[2026-04-26 20:05:05] 2026-04-26 18:03:55,883 | INFO     | chi2: 1.1056331724465864
[2026-04-26 20:05:05] 2026-04-26 18:03:55,883 | INFO     | current chi2=1.1056331724465864 (change=68.85458657448214 %)
[2026-04-26 20:05:05] 2026-04-26 18:03:55,884 | INFO     | sum of square deviations: 7028008982.0
[2026-04-26 20:05:05] 2026-04-26 18:03:55,886 | INFO     | sum of deviations: -73624900624.0
[2026-04-26 20:05:05] 2026-04-26 18:03:55,894 | INFO     | mean x (centered): 0.0
[2026-04-26 20:05:05] 2026-04-26 18:03:55,894 | INFO     | mean y: 2526334.731448763
[2026-04-26 20:05:05] 2026-04-26 18:03:55,894 | INFO     | intersect: 2526334.731448763
[2026-04-26 20:05:05] 2026-04-26 18:03:55,895 | INFO     | chi2: 1.0085909247408547
[2026-04-26 20:05:05] 2026-04-26 18:03:55,895 | INFO     | current chi2=1.0085909247408547 (change=8.777074541910954 %)
[2026-04-26 20:05:05] 2026-04-26 18:03:55,895 | INFO     | left removable region: 15
[2026-04-26 20:05:05] 2026-04-26 18:03:55,896 | INFO     | sum of square deviations: 6590404498.0
[2026-04-26 20:05:05] 2026-04-26 18:03:55,898 | INFO     | sum of deviations: -53458169595.999985
[2026-04-26 20:05:05] 2026-04-26 18:03:55,898 | INFO     | mean x (centered): 0.0
[2026-04-26 20:05:05] 2026-04-26 18:03:55,898 | INFO     | mean y: 2534627.38267148
[2026-04-26 20:05:05] 2026-04-26 18:03:55,899 | INFO     | intersect: 2534627.38267148
[2026-04-26 20:05:05] 2026-04-26 18:03:55,899 | INFO     | chi2: 0.21728782002171826
[2026-04-26 20:05:05] 2026-04-26 18:03:55,899 | INFO     | current memory leak: -8.11 B/s (using 277 data points, chi2=0.22)
[2026-04-26 20:05:05] 2026-04-26 18:03:55,900 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2026-04-26 20:05:05] 2026-04-26 18:03:55,900 | INFO     | ..............................
[2026-04-26 20:05:05] 2026-04-26 18:03:55,900 | INFO     | . Timing measurements:
[2026-04-26 20:05:05] 2026-04-26 18:03:55,901 | INFO     | . get job = 0 s
[2026-04-26 20:05:05] 2026-04-26 18:03:55,901 | INFO     | . initial setup = 121 s
[2026-04-26 20:05:05] 2026-04-26 18:03:55,901 | INFO     | . payload setup = 317 s
[2026-04-26 20:05:05] 2026-04-26 18:03:55,901 | INFO     | . stage-in = 0 s
[2026-04-26 20:05:05] 2026-04-26 18:03:55,901 | INFO     | . payload execution = 18294 s
[2026-04-26 20:05:05] 2026-04-26 18:03:55,901 | INFO     | . stage-out = 3 s
[2026-04-26 20:05:05] 2026-04-26 18:03:55,901 | INFO     | . log creation = 1 s
[2026-04-26 20:05:05] 2026-04-26 18:03:55,901 | INFO     | ..............................
[2026-04-26 20:05:05] 2026-04-26 18:03:56,142 | INFO     | 
[2026-04-26 20:05:05] 2026-04-26 18:03:56,142 | INFO     | job summary report
[2026-04-26 20:05:05] 2026-04-26 18:03:56,142 | INFO     | --------------------------------------------------
[2026-04-26 20:05:05] 2026-04-26 18:03:56,142 | INFO     | PanDA job id: 7105830130
[2026-04-26 20:05:05] 2026-04-26 18:03:56,142 | INFO     | task id: 49645815
[2026-04-26 20:05:05] 2026-04-26 18:03:56,142 | INFO     | errors: (none)
[2026-04-26 20:05:05] 2026-04-26 18:03:56,143 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-26 20:05:05] 2026-04-26 18:03:56,143 | INFO     | pilot state: finished 
[2026-04-26 20:05:05] 2026-04-26 18:03:56,143 | INFO     | transexitcode: 0
[2026-04-26 20:05:05] 2026-04-26 18:03:56,143 | INFO     | exeerrorcode: 0
[2026-04-26 20:05:05] 2026-04-26 18:03:56,143 | INFO     | exeerrordiag: 
[2026-04-26 20:05:05] 2026-04-26 18:03:56,143 | INFO     | exitcode: 0
[2026-04-26 20:05:05] 2026-04-26 18:03:56,143 | INFO     | exitmsg: OK
[2026-04-26 20:05:05] 2026-04-26 18:03:56,143 | INFO     | cpuconsumptiontime: 69269 s
[2026-04-26 20:05:05] 2026-04-26 18:03:56,143 | INFO     | nevents: 400
[2026-04-26 20:05:05] 2026-04-26 18:03:56,143 | INFO     | neventsw: 0
[2026-04-26 20:05:05] 2026-04-26 18:03:56,144 | INFO     | pid: 19896
[2026-04-26 20:05:05] 2026-04-26 18:03:56,144 | INFO     | pgrp: 19896
[2026-04-26 20:05:05] 2026-04-26 18:03:56,144 | INFO     | corecount: 8
[2026-04-26 20:05:05] 2026-04-26 18:03:56,144 | INFO     | event service: False
[2026-04-26 20:05:05] 2026-04-26 18:03:56,144 | INFO     | sizes: {0: 2273999, 1: 2253707, 2: 2276513, 13: 2276513, 18615: 2309021, 18619: 2318019, 18620: 2318397}
[2026-04-26 20:05:05] 2026-04-26 18:03:56,144 | INFO     | --------------------------------------------------
[2026-04-26 20:05:05] 2026-04-26 18:03:56,144 | INFO     | 
[2026-04-26 20:05:05] 2026-04-26 18:03:56,144 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-04-26 20:05:05] 2026-04-26 18:03:56,517 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-26 20:05:05] 2026-04-26 18:03:56,518 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-26 20:05:05] 2026-04-26 18:03:56,518 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-26 20:05:05] 2026-04-26 18:03:56,518 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-26 20:05:05] 2026-04-26 18:03:56,518 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-26 20:05:05] 2026-04-26 18:03:56,518 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-26 20:05:05] 2026-04-26 18:03:56,518 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-26 20:05:05] 2026-04-26 18:03:56,518 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-26 20:05:05] 2026-04-26 18:03:56,518 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-26 20:05:05] 2026-04-26 18:03:56,519 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-26 20:05:05] 2026-04-26 18:03:56,519 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-26 20:05:05] 2026-04-26 18:03:56,519 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-26 20:05:05] 2026-04-26 18:03:56,519 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-26 20:05:05] 2026-04-26 18:03:56,519 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-26 20:05:05] 2026-04-26 18:03:56,519 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-26 20:05:05] 2026-04-26 18:03:56,519 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-26 20:05:05] 2026-04-26 18:03:56,519 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-26 20:05:05] 2026-04-26 18:03:56,519 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-26 20:05:05] 2026-04-26 18:03:56,520 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-26 20:05:05] 2026-04-26 18:03:56,520 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-26 20:05:05] 2026-04-26 18:03:56,520 | INFO     | job 7105830130 has completed (purged errors)
[2026-04-26 20:05:05] 2026-04-26 18:03:56,520 | INFO     | overall cleanup function is called
[2026-04-26 20:05:05] 2026-04-26 18:03:57,533 | INFO     | --- collectZombieJob: --- 10, [19896]
[2026-04-26 20:05:05] 2026-04-26 18:03:57,533 | INFO     | zombie collector waiting for pid 19896
[2026-04-26 20:05:05] 2026-04-26 18:03:57,533 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-26 20:05:05] 2026-04-26 18:03:57,533 | INFO     | collected zombie processes
[2026-04-26 20:05:05] 2026-04-26 18:03:57,533 | INFO     | will attempt to kill all subprocesses of pid=19896
[2026-04-26 20:05:05] 2026-04-26 18:03:57,604 | INFO     | process IDs to be killed: [19896] (in reverse order)
[2026-04-26 20:05:05] 2026-04-26 18:03:57,974 | WARNING  | found no corresponding commands to process id(s)
[2026-04-26 20:05:05] 2026-04-26 18:03:57,974 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-26 20:05:05] 2026-04-26 18:03:57,976 | INFO     | did not find any defunct processes belonging to 19896
[2026-04-26 20:05:05] 2026-04-26 18:03:57,978 | INFO     | did not find any defunct processes belonging to 19896
[2026-04-26 20:05:05] 2026-04-26 18:03:57,978 | INFO     | Ready for new job
[2026-04-26 20:05:05] 2026-04-26 18:03:57,980 | INFO     | ***************************************
[2026-04-26 20:05:05] 2026-04-26 18:03:57,980 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-26 20:05:05] 2026-04-26 18:03:57,980 | INFO     | ***************************************
[2026-04-26 20:05:05] 2026-04-26 18:03:57,981 | INFO     | 
[2026-04-26 20:05:05] 2026-04-26 18:03:57,981 | INFO     | pilot is running in a VM
[2026-04-26 20:05:05] 2026-04-26 18:03:57,981 | INFO     | architecture information:
[2026-04-26 20:05:05] 2026-04-26 18:03:57,982 | INFO     | executing command: cat /etc/os-release
[2026-04-26 20:05:05] 2026-04-26 18:03:58,209 | INFO     | cat /etc/os-release:
[2026-04-26 20:05:05] NAME="CentOS Linux"
[2026-04-26 20:05:05] VERSION="7 (Core)"
[2026-04-26 20:05:05] ID="centos"
[2026-04-26 20:05:05] ID_LIKE="rhel fedora"
[2026-04-26 20:05:05] VERSION_ID="7"
[2026-04-26 20:05:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-26 20:05:05] ANSI_COLOR="0;31"
[2026-04-26 20:05:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-26 20:05:05] HOME_URL="https://www.centos.org/"
[2026-04-26 20:05:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-26 20:05:05] 
[2026-04-26 20:05:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-26 20:05:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-26 20:05:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-26 20:05:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-26 20:05:05] 
[2026-04-26 20:05:05] 2026-04-26 18:03:58,209 | INFO     | ***************************************
[2026-04-26 20:05:05] 2026-04-26 18:03:58,713 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-04-26 20:05:05] 2026-04-26 18:03:58,889 | INFO     | sufficient remaining disk space (496522756096 B)
[2026-04-26 20:05:05] 2026-04-26 18:03:58,890 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-26 20:05:05] 2026-04-26 18:03:58,890 | INFO     | current server update state: UPDATING_FINAL
[2026-04-26 20:05:05] 2026-04-26 18:03:58,890 | INFO     | update_server=False
[2026-04-26 20:05:05] 2026-04-26 18:03:58,890 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-26 20:05:05] 2026-04-26 18:03:58,891 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-26 20:05:05] 2026-04-26 18:03:59,272 | INFO     | all data control threads have been joined
[2026-04-26 20:05:05] 2026-04-26 18:03:59,464 | INFO     | all payload control threads have been joined
[2026-04-26 20:05:05] 2026-04-26 18:03:59,685 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-26 20:05:05] 2026-04-26 18:03:59,685 | INFO     | aborting loop
[2026-04-26 20:05:05] 2026-04-26 18:03:59,896 | INFO     | [job] retrieve thread has finished
[2026-04-26 20:05:05] 2026-04-26 18:03:59,963 | INFO     | [job] validate thread has finished
[2026-04-26 20:05:05] 2026-04-26 18:03:59,976 | INFO     | [data] copytool_in thread has finished
[2026-04-26 20:05:05] 2026-04-26 18:04:00,191 | INFO     | all job control threads have been joined
[2026-04-26 20:05:05] 2026-04-26 18:04:00,269 | INFO     | [payload] validate_post thread has finished
[2026-04-26 20:05:05] 2026-04-26 18:04:00,278 | INFO     | [data] control thread has finished
[2026-04-26 20:05:05] 2026-04-26 18:04:00,470 | INFO     | [payload] control thread has finished
[2026-04-26 20:05:05] 2026-04-26 18:04:00,497 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-26 20:05:05] 2026-04-26 18:04:00,537 | INFO     | [payload] failed_post thread has finished
[2026-04-26 20:05:05] 2026-04-26 18:04:00,691 | INFO     | [job] job monitor thread has finished
[2026-04-26 20:05:05] 2026-04-26 18:04:00,759 | INFO     | [payload] validate_pre thread has finished
[2026-04-26 20:05:05] 2026-04-26 18:04:00,898 | INFO     | [data] copytool_out thread has finished
[2026-04-26 20:05:05] 2026-04-26 18:04:00,940 | INFO     | [payload] execute_payloads thread has finished
[2026-04-26 20:05:05] 2026-04-26 18:04:01,069 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-26 20:05:05] 2026-04-26 18:04:01,197 | INFO     | [job] control thread has finished
[2026-04-26 20:05:05] 2026-04-26 18:04:01,273 | INFO     | [job] create_data_payload thread has finished
[2026-04-26 20:05:05] 2026-04-26 18:04:01,847 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-26 20:05:05] 2026-04-26 18:04:02,075 | INFO     | [job] queue monitor thread has finished
[2026-04-26 20:05:05] 2026-04-26 18:04:05,857 | INFO     | [data] queue_monitor thread has finished
[2026-04-26 20:05:05] 2026-04-26 18:04:26,785 | INFO     | 18756s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-04-26 20:05:05] 2026-04-26 18:04:27,896 | INFO     | PID=15434 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-26 20:05:05] 2026-04-26 18:04:27,897 | INFO     | .. there are 2 such processes running
[2026-04-26 20:05:05] 2026-04-26 18:04:27,897 | INFO     | found 0 job(s) in 20 queues
[2026-04-26 20:05:05] 2026-04-26 18:04:27,897 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-26 20:05:05] 2026-04-26 18:04:27,897 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-26 20:05:05] 2026-04-26 18:04:53,743 | INFO     | [monitor] cgroup control has ended
[2026-04-26 20:05:05] 2026-04-26 18:04:54,635 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139659210889024)>', '<ExcThread(monitor, started 139658512037632)>']
[2026-04-26 20:05:05] 2026-04-26 18:04:55,059 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-26 20:05:05] 2026-04-26 18:04:55,059 | INFO     | [monitor] control thread has ended
[2026-04-26 20:05:05] 2026-04-26 18:04:59,661 | INFO     | all workflow threads have been joined
[2026-04-26 20:05:05] 2026-04-26 18:04:59,661 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-26 20:05:05] 2026-04-26 18:04:59,661 | INFO     | traces error code: 0
[2026-04-26 20:05:05] 2026-04-26 18:04:59,661 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-26 20:05:05] 2026-04-26 18:04:59,951 [wrapper] ==== pilot stdout END ====
[2026-04-26 20:05:05] 2026-04-26 18:05:00,032 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-26 20:05:05] 2026-04-26 18:05:00,132 [wrapper] pilotpid: 15434
[2026-04-26 20:05:05] 2026-04-26 18:05:00,197 [wrapper] Pilot exit status: 0
[2026-04-26 20:05:05] 2026-04-26 18:05:00,746 [wrapper] pandaids: 7105830130
[2026-04-26 20:05:05] 2026-04-26 18:05:02,118 [wrapper] cleanup supervisor_pilot 27419 15435
[2026-04-26 20:05:05] 2026-04-26 18:05:02,195 [wrapper] Test setup, not cleaning
[2026-04-26 20:05:05] 2026-04-26 18:05:02,305 [wrapper] apfmon messages muted
[2026-04-26 20:05:05] 2026-04-26 18:05:02,365 [wrapper] ==== wrapper stdout END ====
[2026-04-26 20:05:05] 2026-04-26 18:05:02,472 [wrapper] ==== wrapper stderr END ====
[2026-04-26 20:05:05]  *** Error codes and diagnostics ***
[2026-04-26 20:05:05]     "exeErrorCode": 0,
[2026-04-26 20:05:05]     "pilotErrorCode": 0,
[2026-04-26 20:05:05]  *** Listing of results directory ***
[2026-04-26 20:05:05] total 420540
[2026-04-26 20:05:05] -rw-r--r--. 1 boinc boinc    683926 Apr 26 14:40 pilot3.tar.gz
[2026-04-26 20:05:05] -rwx------. 1 boinc boinc     36322 Apr 26 14:40 runpilot2-wrapper.sh
[2026-04-26 20:05:05] -rw-r--r--. 1 boinc boinc      5631 Apr 26 14:41 queuedata.json
[2026-04-26 20:05:05] -rw-r--r--. 1 boinc boinc       100 Apr 26 14:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-26 20:05:05] -rwxr-xr-x. 1 boinc boinc      7986 Apr 26 14:46 run_atlas
[2026-04-26 20:05:05] -rw-r--r--. 1 boinc boinc       105 Apr 26 14:46 job.xml
[2026-04-26 20:05:05] -rw-r--r--. 2 boinc boinc 222773271 Apr 26 14:46 EVNT.48629115._000229.pool.root.1
[2026-04-26 20:05:05] drwxrwx--x. 2 boinc boinc        68 Apr 26 14:46 shared
[2026-04-26 20:05:05] -rw-r--r--. 2 boinc boinc    697444 Apr 26 14:46 input.tar.gz
[2026-04-26 20:05:05] -rw-r--r--. 1 boinc boinc      6306 Apr 26 14:46 init_data.xml
[2026-04-26 20:05:05] -rw-r--r--. 2 boinc boinc     15667 Apr 26 14:46 start_atlas.sh
[2026-04-26 20:05:05] -rw-r--r--. 1 boinc boinc         0 Apr 26 14:46 boinc_lockfile
[2026-04-26 20:05:05] -rw-r--r--. 1 boinc boinc      2628 Apr 26 14:47 pandaJob.out
[2026-04-26 20:05:05] -rw-------. 1 boinc boinc       415 Apr 26 14:53 workernode_map.json
[2026-04-26 20:05:05] -rw-------. 1 boinc boinc    997522 Apr 26 14:53 agis_schedconf.cvmfs.json
[2026-04-26 20:05:05] drwx------. 5 boinc boinc      4096 Apr 26 14:53 pilot3
[2026-04-26 20:05:05] -rw-------. 1 boinc boinc 199450561 Apr 26 20:02 HITS.49645815._021015.pool.root.1
[2026-04-26 20:05:05] -rw-r--r--. 1 boinc boinc       489 Apr 26 20:02 boinc_task_state.xml
[2026-04-26 20:05:05] -rw-------. 1 boinc boinc      1013 Apr 26 20:03 memory_monitor_summary.json
[2026-04-26 20:05:05] -rw-------. 1 boinc boinc        95 Apr 26 20:03 pilot_heartbeat.json
[2026-04-26 20:05:05] -rw-------. 1 boinc boinc   1509089 Apr 26 20:03 agis_ddmendpoints.agis.ALL.json
[2026-04-26 20:05:05] -rw-------. 1 boinc boinc    428083 Apr 26 20:03 log.49645815._021015.job.log.tgz.1
[2026-04-26 20:05:05] -rw-------. 1 boinc boinc      6335 Apr 26 20:03 heartbeat_new.json
[2026-04-26 20:05:05] -rw-------. 1 boinc boinc      6226 Apr 26 20:03 heartbeat.json
[2026-04-26 20:05:05] -rw-r--r--. 1 boinc boinc      8192 Apr 26 20:04 boinc_mmap_file
[2026-04-26 20:05:05] -rw-r--r--. 1 boinc boinc        28 Apr 26 20:04 wrapper_checkpoint.txt
[2026-04-26 20:05:05] -rw-------. 1 boinc boinc      4999 Apr 26 20:04 pilotlog.txt
[2026-04-26 20:05:05] -rw-------. 1 boinc boinc   1716790 Apr 26 20:05 log.49645815._021015.job.log.1
[2026-04-26 20:05:05] -rw-------. 1 boinc boinc       357 Apr 26 20:05 output.list
[2026-04-26 20:05:05] -rw-r--r--. 1 boinc boinc       410 Apr 26 20:05 runtime_log
[2026-04-26 20:05:05] -rw-------. 1 boinc boinc   2160640 Apr 26 20:05 result.tar.gz
[2026-04-26 20:05:05] -rw-r--r--. 1 boinc boinc      8439 Apr 26 20:05 runtime_log.err
[2026-04-26 20:05:05] -rw-------. 1 boinc boinc       656 Apr 26 20:05 07c292ad5caf.diag
[2026-04-26 20:05:05] -rw-r--r--. 1 boinc boinc     20643 Apr 26 20:05 stderr.txt
[2026-04-26 20:05:05] HITS file was successfully produced:
[2026-04-26 20:05:05] -rw-------. 1 boinc boinc 199450561 Apr 26 20:02 shared/HITS.pool.root.1
[2026-04-26 20:05:05]  *** Contents of shared directory: ***
[2026-04-26 20:05:05] total 415144
[2026-04-26 20:05:05] -rw-r--r--. 2 boinc boinc 222773271 Apr 26 14:46 ATLAS.root_0
[2026-04-26 20:05:05] -rw-r--r--. 2 boinc boinc    697444 Apr 26 14:46 input.tar.gz
[2026-04-26 20:05:05] -rw-r--r--. 2 boinc boinc     15667 Apr 26 14:46 start_atlas.sh
[2026-04-26 20:05:05] -rw-------. 1 boinc boinc 199450561 Apr 26 20:02 HITS.pool.root.1
[2026-04-26 20:05:05] -rw-------. 1 boinc boinc   2160640 Apr 26 20:05 result.tar.gz
20:05:06 (11386): run_atlas exited; CPU time 69448.962881
20:05:06 (11386): called boinc_finish(0)

</stderr_txt>
]]>

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