Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:41:24 (2555200): wrapper (7.7.26015): starting
16:41:24 (2555200): wrapper: running run_atlas (--nthreads 4)
[2026-04-26 16:41:24] Arguments: --nthreads 4
[2026-04-26 16:41:24] Threads: 4
[2026-04-26 16:41:24] Checking for CVMFS
[2026-04-26 16:41:24] No cvmfs_config command found, will try listing directly
[2026-04-26 16:41:24] CVMFS is ok
[2026-04-26 16:41:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-26 16:41:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-26 16:41:24] Further information can be found at the LHC@home message board.
[2026-04-26 16:41:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-26 16:41:24] Checking for apptainer binary...
[2026-04-26 16:41:24] which: no apptainer in ((null))
[2026-04-26 16:41:24] apptainer is not installed, using version from CVMFS
[2026-04-26 16:41:24] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-26 16:41:24] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot84/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2026-04-26 16:41:24] apptainer works
[2026-04-26 16:41:24] Set ATHENA_PROC_NUMBER=4
[2026-04-26 16:41:24] Set ATHENA_CORE_NUMBER=4
[2026-04-26 16:41:24] Starting ATLAS job with PandaID=7097147794
[2026-04-26 16:41:24] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot84/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-26 18:47:05]  *** The last 200 lines of the pilot log: ***
[2026-04-26 18:47:05] 2026-04-26 16:45:55,797 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot84/slots/0/workernode_map.json
[2026-04-26 18:47:05] 2026-04-26 16:45:55,798 | INFO     | this job has now completed (state=finished)
[2026-04-26 18:47:05] 2026-04-26 16:45:55,798 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-26 18:47:05] 2026-04-26 16:45:55,798 | INFO     | log transfer has been attempted: DONE
[2026-04-26 18:47:05] 2026-04-26 16:45:55,798 | INFO     | job 7097147794 has finished - writing final server update
[2026-04-26 18:47:05] 2026-04-26 16:45:55,798 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_10330/.job.ad'
[2026-04-26 18:47:05] 2026-04-26 16:45:55,798 | INFO     | total number of processed events: 400 (read)
[2026-04-26 18:47:05] 2026-04-26 16:45:55,822 | INFO     | using path: /var/lib/boinc/var/slot84/slots/0/PanDA_Pilot-7097147794/memory_monitor_summary.json (trf name=prmon)
[2026-04-26 18:47:05] 2026-04-26 16:45:55,823 | INFO     | extracted standard info from prmon json
[2026-04-26 18:47:05] 2026-04-26 16:45:55,823 | INFO     | extracted standard memory fields from prmon json
[2026-04-26 18:47:05] 2026-04-26 16:45:55,823 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-26 18:47:05] 2026-04-26 16:45:55,824 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-26 18:47:05] 2026-04-26 16:45:55,826 | INFO     | fitting pss+swap vs Time
[2026-04-26 18:47:05] 2026-04-26 16:45:55,826 | INFO     | sum of square deviations: 563026370.5
[2026-04-26 18:47:05] 2026-04-26 16:45:55,827 | INFO     | sum of deviations: -6102734752.000002
[2026-04-26 18:47:05] 2026-04-26 16:45:55,827 | INFO     | mean x (centered): 0.0
[2026-04-26 18:47:05] 2026-04-26 16:45:55,827 | INFO     | mean y: 2385005.426229508
[2026-04-26 18:47:05] 2026-04-26 16:45:55,827 | INFO     | intersect: 2385005.426229508
[2026-04-26 18:47:05] 2026-04-26 16:45:55,828 | INFO     | chi2: 1.2529629028519027
[2026-04-26 18:47:05] 2026-04-26 16:45:55,828 | INFO     | sum of square deviations: 496597218.0
[2026-04-26 18:47:05] 2026-04-26 16:45:55,829 | INFO     | sum of deviations: -5606650239.000002
[2026-04-26 18:47:05] 2026-04-26 16:45:55,829 | INFO     | mean x (centered): 0.0
[2026-04-26 18:47:05] 2026-04-26 16:45:55,829 | INFO     | mean y: 2386150.8803418805
[2026-04-26 18:47:05] 2026-04-26 16:45:55,829 | INFO     | intersect: 2386150.8803418805
[2026-04-26 18:47:05] 2026-04-26 16:45:55,829 | INFO     | chi2: 1.2516410961097648
[2026-04-26 18:47:05] 2026-04-26 16:45:55,829 | INFO     | current chi2=1.2516410961097648 (change=0.10549448344634048 %)
[2026-04-26 18:47:05] 2026-04-26 16:45:55,829 | INFO     | right removable region: 116
[2026-04-26 18:47:05] 2026-04-26 16:45:55,830 | INFO     | sum of square deviations: 496597218.0
[2026-04-26 18:47:05] 2026-04-26 16:45:55,830 | INFO     | sum of deviations: -16956233073.999998
[2026-04-26 18:47:05] 2026-04-26 16:45:55,830 | INFO     | mean x (centered): 0.0
[2026-04-26 18:47:05] 2026-04-26 16:45:55,830 | INFO     | mean y: 2409036.0256410255
[2026-04-26 18:47:05] 2026-04-26 16:45:55,830 | INFO     | intersect: 2409036.0256410255
[2026-04-26 18:47:05] 2026-04-26 16:45:55,831 | INFO     | chi2: 0.04058790027964066
[2026-04-26 18:47:05] 2026-04-26 16:45:55,831 | INFO     | current chi2=0.04058790027964066 (change=96.76064628990551 %)
[2026-04-26 18:47:05] 2026-04-26 16:45:55,831 | INFO     | sum of square deviations: 435610028.0
[2026-04-26 18:47:05] 2026-04-26 16:45:55,832 | INFO     | sum of deviations: -14064744227.499998
[2026-04-26 18:47:05] 2026-04-26 16:45:55,832 | INFO     | mean x (centered): 0.0
[2026-04-26 18:47:05] 2026-04-26 16:45:55,832 | INFO     | mean y: 2401862.2589285714
[2026-04-26 18:47:05] 2026-04-26 16:45:55,832 | INFO     | intersect: 2401862.2589285714
[2026-04-26 18:47:05] 2026-04-26 16:45:55,832 | INFO     | chi2: 0.034431212520561555
[2026-04-26 18:47:05] 2026-04-26 16:45:55,832 | INFO     | current chi2=0.034431212520561555 (change=15.168776203403084 %)
[2026-04-26 18:47:05] 2026-04-26 16:45:55,832 | INFO     | left removable region: 10
[2026-04-26 18:47:05] 2026-04-26 16:45:55,832 | INFO     | sum of square deviations: 369281342.5
[2026-04-26 18:47:05] 2026-04-26 16:45:55,833 | INFO     | sum of deviations: -13158107876.500002
[2026-04-26 18:47:05] 2026-04-26 16:45:55,833 | INFO     | mean x (centered): 0.0
[2026-04-26 18:47:05] 2026-04-26 16:45:55,833 | INFO     | mean y: 2404375.1415094337
[2026-04-26 18:47:05] 2026-04-26 16:45:55,833 | INFO     | intersect: 2404375.1415094337
[2026-04-26 18:47:05] 2026-04-26 16:45:55,833 | INFO     | chi2: 0.02967353186500185
[2026-04-26 18:47:05] 2026-04-26 16:45:55,834 | INFO     | current memory leak: -35.63 B/s (using 106 data points, chi2=0.03)
[2026-04-26 18:47:05] 2026-04-26 16:45:55,834 | INFO     | could have reported an average CPU frequency of 2738 MHz (8 samples)
[2026-04-26 18:47:05] 2026-04-26 16:45:55,834 | INFO     | ..............................
[2026-04-26 18:47:05] 2026-04-26 16:45:55,834 | INFO     | . Timing measurements:
[2026-04-26 18:47:05] 2026-04-26 16:45:55,834 | INFO     | . get job = 0 s
[2026-04-26 18:47:05] 2026-04-26 16:45:55,834 | INFO     | . initial setup = 8 s
[2026-04-26 18:47:05] 2026-04-26 16:45:55,834 | INFO     | . payload setup = 13 s
[2026-04-26 18:47:05] 2026-04-26 16:45:55,834 | INFO     | . stage-in = 0 s
[2026-04-26 18:47:05] 2026-04-26 16:45:55,835 | INFO     | . payload execution = 7416 s
[2026-04-26 18:47:05] 2026-04-26 16:45:55,835 | INFO     | . stage-out = 0 s
[2026-04-26 18:47:05] 2026-04-26 16:45:55,835 | INFO     | . log creation = 0 s
[2026-04-26 18:47:05] 2026-04-26 16:45:55,835 | INFO     | ..............................
[2026-04-26 18:47:05] 2026-04-26 16:45:55,932 | INFO     | 
[2026-04-26 18:47:05] 2026-04-26 16:45:55,933 | INFO     | job summary report
[2026-04-26 18:47:05] 2026-04-26 16:45:55,933 | INFO     | --------------------------------------------------
[2026-04-26 18:47:05] 2026-04-26 16:45:55,933 | INFO     | PanDA job id: 7097147794
[2026-04-26 18:47:05] 2026-04-26 16:45:55,933 | INFO     | task id: 49545114
[2026-04-26 18:47:05] 2026-04-26 16:45:55,933 | INFO     | errors: (none)
[2026-04-26 18:47:05] 2026-04-26 16:45:55,933 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-26 18:47:05] 2026-04-26 16:45:55,933 | INFO     | pilot state: finished 
[2026-04-26 18:47:05] 2026-04-26 16:45:55,933 | INFO     | transexitcode: 0
[2026-04-26 18:47:05] 2026-04-26 16:45:55,933 | INFO     | exeerrorcode: 0
[2026-04-26 18:47:05] 2026-04-26 16:45:55,934 | INFO     | exeerrordiag: 
[2026-04-26 18:47:05] 2026-04-26 16:45:55,934 | INFO     | exitcode: 0
[2026-04-26 18:47:05] 2026-04-26 16:45:55,934 | INFO     | exitmsg: OK
[2026-04-26 18:47:05] 2026-04-26 16:45:55,934 | INFO     | cpuconsumptiontime: 28341 s
[2026-04-26 18:47:05] 2026-04-26 16:45:55,934 | INFO     | nevents: 400
[2026-04-26 18:47:05] 2026-04-26 16:45:55,934 | INFO     | neventsw: 0
[2026-04-26 18:47:05] 2026-04-26 16:45:55,934 | INFO     | pid: 2565093
[2026-04-26 18:47:05] 2026-04-26 16:45:55,934 | INFO     | pgrp: 2565093
[2026-04-26 18:47:05] 2026-04-26 16:45:55,934 | INFO     | corecount: 4
[2026-04-26 18:47:05] 2026-04-26 16:45:55,934 | INFO     | event service: False
[2026-04-26 18:47:05] 2026-04-26 16:45:55,934 | INFO     | sizes: {0: 2274658, 1: 2276487, 11: 2276487, 7434: 2303906, 7435: 2312982, 7438: 2313120}
[2026-04-26 18:47:05] 2026-04-26 16:45:55,934 | INFO     | --------------------------------------------------
[2026-04-26 18:47:05] 2026-04-26 16:45:55,934 | INFO     | 
[2026-04-26 18:47:05] 2026-04-26 16:45:55,935 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot84/slots/0
[2026-04-26 18:47:05] 2026-04-26 16:45:55,968 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-26 18:47:05] 2026-04-26 16:45:55,968 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-26 18:47:05] 2026-04-26 16:45:55,968 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-26 18:47:05] 2026-04-26 16:45:55,968 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-26 18:47:05] 2026-04-26 16:45:55,969 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-26 18:47:05] 2026-04-26 16:45:55,969 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-26 18:47:05] 2026-04-26 16:45:55,969 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-26 18:47:05] 2026-04-26 16:45:55,969 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-26 18:47:05] 2026-04-26 16:45:55,969 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-26 18:47:05] 2026-04-26 16:45:55,969 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-26 18:47:05] 2026-04-26 16:45:55,969 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-26 18:47:05] 2026-04-26 16:45:55,969 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-26 18:47:05] 2026-04-26 16:45:55,969 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-26 18:47:05] 2026-04-26 16:45:55,969 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-26 18:47:05] 2026-04-26 16:45:55,970 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-26 18:47:05] 2026-04-26 16:45:55,970 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-26 18:47:05] 2026-04-26 16:45:55,970 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-26 18:47:05] 2026-04-26 16:45:55,970 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-26 18:47:05] 2026-04-26 16:45:55,970 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-26 18:47:05] 2026-04-26 16:45:55,970 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-26 18:47:05] 2026-04-26 16:45:55,970 | INFO     | job 7097147794 has completed (purged errors)
[2026-04-26 18:47:05] 2026-04-26 16:45:55,970 | INFO     | overall cleanup function is called
[2026-04-26 18:47:05] 2026-04-26 16:45:56,980 | INFO     | --- collectZombieJob: --- 10, [2565093]
[2026-04-26 18:47:05] 2026-04-26 16:45:56,980 | INFO     | zombie collector waiting for pid 2565093
[2026-04-26 18:47:05] 2026-04-26 16:45:56,980 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-26 18:47:05] 2026-04-26 16:45:56,980 | INFO     | collected zombie processes
[2026-04-26 18:47:05] 2026-04-26 16:45:56,980 | INFO     | will attempt to kill all subprocesses of pid=2565093
[2026-04-26 18:47:05] 2026-04-26 16:45:58,094 | INFO     | process IDs to be killed: [2565093] (in reverse order)
[2026-04-26 18:47:05] 2026-04-26 16:45:58,348 | WARNING  | process 2565093 can no longer be monitored (due to stat problems) - aborting
[2026-04-26 18:47:05] 2026-04-26 16:45:58,388 | WARNING  | found no corresponding commands to process id(s)
[2026-04-26 18:47:05] 2026-04-26 16:45:58,388 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-26 18:47:05] 2026-04-26 16:45:58,472 | INFO     | did not find any defunct processes belonging to 2565093
[2026-04-26 18:47:05] 2026-04-26 16:45:58,558 | INFO     | did not find any defunct processes belonging to 2565093
[2026-04-26 18:47:05] 2026-04-26 16:45:58,560 | INFO     | Ready for new job
[2026-04-26 18:47:05] 2026-04-26 16:45:58,562 | INFO     | ***************************************
[2026-04-26 18:47:05] 2026-04-26 16:45:58,563 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-26 18:47:05] 2026-04-26 16:45:58,563 | INFO     | ***************************************
[2026-04-26 18:47:05] 2026-04-26 16:45:58,563 | INFO     | 
[2026-04-26 18:47:05] 2026-04-26 16:45:58,575 | INFO     | architecture information:
[2026-04-26 18:47:05] 2026-04-26 16:45:58,575 | INFO     | executing command: cat /etc/os-release
[2026-04-26 18:47:05] 2026-04-26 16:45:58,605 | INFO     | cat /etc/os-release:
[2026-04-26 18:47:05] NAME="CentOS Linux"
[2026-04-26 18:47:05] VERSION="7 (Core)"
[2026-04-26 18:47:05] ID="centos"
[2026-04-26 18:47:05] ID_LIKE="rhel fedora"
[2026-04-26 18:47:05] VERSION_ID="7"
[2026-04-26 18:47:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-26 18:47:05] ANSI_COLOR="0;31"
[2026-04-26 18:47:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-26 18:47:05] HOME_URL="https://www.centos.org/"
[2026-04-26 18:47:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-26 18:47:05] 
[2026-04-26 18:47:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-26 18:47:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-26 18:47:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-26 18:47:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-26 18:47:05] 
[2026-04-26 18:47:05] 2026-04-26 16:45:58,605 | INFO     | ***************************************
[2026-04-26 18:47:05] 2026-04-26 16:45:58,998 | INFO     | using path: /var/lib/boinc/var/slot84/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-26 18:47:05] 2026-04-26 16:45:59,108 | INFO     | executing command: df -mP /var/lib/boinc/var/slot84/slots/0
[2026-04-26 18:47:05] 2026-04-26 16:45:59,137 | INFO     | sufficient remaining disk space (172977291264 B)
[2026-04-26 18:47:05] 2026-04-26 16:45:59,137 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-26 18:47:05] 2026-04-26 16:45:59,137 | INFO     | current server update state: UPDATING_FINAL
[2026-04-26 18:47:05] 2026-04-26 16:45:59,137 | INFO     | update_server=False
[2026-04-26 18:47:05] 2026-04-26 16:45:59,137 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-26 18:47:05] 2026-04-26 16:45:59,215 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-26 18:47:05] 2026-04-26 16:45:59,223 | INFO     | all data control threads have been joined
[2026-04-26 18:47:05] 2026-04-26 16:45:59,627 | INFO     | number of running child processes to parent process 2565093: 1
[2026-04-26 18:47:05] 2026-04-26 16:45:59,628 | INFO     | maximum number of monitored processes: 6
[2026-04-26 18:47:05] 2026-04-26 16:45:59,628 | INFO     | aborting job monitoring since job object (job id=7097147794) has expired
[2026-04-26 18:47:05] 2026-04-26 16:45:59,628 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-26 18:47:05] 2026-04-26 16:45:59,628 | INFO     | will abort loop
[2026-04-26 18:47:05] 2026-04-26 16:46:00,048 | INFO     | all payload control threads have been joined
[2026-04-26 18:47:05] 2026-04-26 16:46:00,143 | INFO     | [job] retrieve thread has finished
[2026-04-26 18:47:05] 2026-04-26 16:46:00,228 | INFO     | [payload] validate_pre thread has finished
[2026-04-26 18:47:05] 2026-04-26 16:46:00,229 | INFO     | [data] control thread has finished
[2026-04-26 18:47:05] 2026-04-26 16:46:00,302 | INFO     | all job control threads have been joined
[2026-04-26 18:47:05] 2026-04-26 16:46:00,522 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-26 18:47:05] 2026-04-26 16:46:00,623 | INFO     | [data] copytool_in thread has finished
[2026-04-26 18:47:05] 2026-04-26 16:46:00,634 | INFO     | [job] job monitor thread has finished
[2026-04-26 18:47:05] 2026-04-26 16:46:00,649 | INFO     | [payload] validate_post thread has finished
[2026-04-26 18:47:05] 2026-04-26 16:46:00,942 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-26 18:47:05] 2026-04-26 16:46:01,006 | INFO     | [payload] failed_post thread has finished
[2026-04-26 18:47:05] 2026-04-26 16:46:01,053 | INFO     | [payload] control thread has finished
[2026-04-26 18:47:05] 2026-04-26 16:46:01,307 | INFO     | [job] control thread has finished
[2026-04-26 18:47:05] 2026-04-26 16:46:01,373 | INFO     | [job] validate thread has finished
[2026-04-26 18:47:05] 2026-04-26 16:46:01,518 | INFO     | [job] create_data_payload thread has finished
[2026-04-26 18:47:05] 2026-04-26 16:46:01,562 | INFO     | [payload] execute_payloads thread has finished
[2026-04-26 18:47:05] 2026-04-26 16:46:01,947 | INFO     | [job] queue monitor thread has finished
[2026-04-26 18:47:05] 2026-04-26 16:46:02,527 | INFO     | [data] copytool_out thread has finished
[2026-04-26 18:47:05] 2026-04-26 16:46:03,221 | INFO     | [data] queue_monitor thread has finished
[2026-04-26 18:47:05] 2026-04-26 16:46:09,406 | INFO     | job.realtimelogging is not enabled
[2026-04-26 18:47:05] 2026-04-26 16:46:10,414 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-26 18:47:05] 2026-04-26 16:46:28,337 | INFO     | PID=2559590 has CPU usage=11.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-26 18:47:05] 2026-04-26 16:46:28,339 | INFO     | .. there are 18 such processes running
[2026-04-26 18:47:05] 2026-04-26 16:46:28,339 | INFO     | found 0 job(s) in 20 queues
[2026-04-26 18:47:05] 2026-04-26 16:46:28,339 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-26 18:47:05] 2026-04-26 16:46:28,340 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-26 18:47:05] 2026-04-26 16:46:57,902 | INFO     | [monitor] cgroup control has ended
[2026-04-26 18:47:05] 2026-04-26 16:46:59,683 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22665308092224)>', '<ExcThread(monitor, started 22664997472000)>']
[2026-04-26 18:47:05] 2026-04-26 16:47:00,496 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-26 18:47:05] 2026-04-26 16:47:00,497 | INFO     | [monitor] control thread has ended
[2026-04-26 18:47:05] 2026-04-26 16:47:04,708 | INFO     | all workflow threads have been joined
[2026-04-26 18:47:05] 2026-04-26 16:47:04,709 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-26 18:47:05] 2026-04-26 16:47:04,709 | INFO     | traces error code: 0
[2026-04-26 18:47:05] 2026-04-26 16:47:04,709 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-26 18:47:05] 2026-04-26 16:47:04,929 [wrapper] ==== pilot stdout END ====
[2026-04-26 18:47:05] 2026-04-26 16:47:04,933 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-26 18:47:05] 2026-04-26 16:47:04,936 [wrapper] pilotpid: 2559590
[2026-04-26 18:47:05] 2026-04-26 16:47:04,941 [wrapper] Pilot exit status: 0
[2026-04-26 18:47:05] 2026-04-26 16:47:04,956 [wrapper] pandaids: 7097147794
[2026-04-26 18:47:05] 2026-04-26 16:47:05,140 [wrapper] cleanup supervisor_pilot 2957978 2559591
[2026-04-26 18:47:05] 2026-04-26 16:47:05,144 [wrapper] Test setup, not cleaning
[2026-04-26 18:47:05] 2026-04-26 16:47:05,148 [wrapper] apfmon messages muted
[2026-04-26 18:47:05] 2026-04-26 16:47:05,150 [wrapper] ==== wrapper stdout END ====
[2026-04-26 18:47:05] 2026-04-26 16:47:05,157 [wrapper] ==== wrapper stderr END ====
[2026-04-26 18:47:05]  *** Error codes and diagnostics ***
[2026-04-26 18:47:05]     "exeErrorCode": 0,
[2026-04-26 18:47:05]     "pilotErrorCode": 0,
[2026-04-26 18:47:05]  *** Listing of results directory ***
[2026-04-26 18:47:05] total 453460
[2026-04-26 18:47:05] -rwx------. 1 boinc boinc     36322 Apr 26 01:14 runpilot2-wrapper.sh
[2026-04-26 18:47:05] -rw-r--r--. 1 boinc boinc      5631 Apr 26 01:26 queuedata.json
[2026-04-26 18:47:05] -rw-r--r--. 1 boinc boinc    683926 Apr 26 01:26 pilot3.tar.gz
[2026-04-26 18:47:05] -rw-r--r--. 1 boinc boinc       100 Apr 26 16:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-26 18:47:05] -rwxr-xr-x. 1 boinc boinc      7986 Apr 26 16:41 run_atlas
[2026-04-26 18:47:05] -rw-r--r--. 1 boinc boinc       105 Apr 26 16:41 job.xml
[2026-04-26 18:47:05] -rw-r--r--. 2 boinc boinc 278503275 Apr 26 16:41 EVNT.49539591._000290.pool.root.1
[2026-04-26 18:47:05] -rw-r--r--. 1 boinc boinc      6539 Apr 26 16:41 init_data.xml
[2026-04-26 18:47:05] -rw-r--r--. 2 boinc boinc     15667 Apr 26 16:41 start_atlas.sh
[2026-04-26 18:47:05] drwxrwx--x. 2 boinc boinc      4096 Apr 26 16:41 shared
[2026-04-26 18:47:05] -rw-r--r--. 2 boinc boinc    697435 Apr 26 16:41 input.tar.gz
[2026-04-26 18:47:05] -rw-r--r--. 1 boinc boinc         0 Apr 26 16:41 boinc_lockfile
[2026-04-26 18:47:05] -rw-r--r--. 1 boinc boinc      2603 Apr 26 16:41 pandaJob.out
[2026-04-26 18:47:05] -rw-------. 1 boinc boinc    997514 Apr 26 16:41 agis_schedconf.cvmfs.json
[2026-04-26 18:47:05] -rw-------. 1 boinc boinc   1509089 Apr 26 16:41 agis_ddmendpoints.agis.ALL.json
[2026-04-26 18:47:05] -rw-------. 1 boinc boinc       443 Apr 26 16:41 workernode_map.json
[2026-04-26 18:47:05] drwx------. 5 boinc boinc      4096 Apr 26 16:41 pilot3
[2026-04-26 18:47:05] -rw-------. 1 boinc boinc 179734406 Apr 26 18:45 HITS.49545114._024480.pool.root.1
[2026-04-26 18:47:05] -rw-r--r--. 1 boinc boinc       487 Apr 26 18:45 boinc_task_state.xml
[2026-04-26 18:47:05] -rw-------. 1 boinc boinc      1032 Apr 26 18:45 memory_monitor_summary.json
[2026-04-26 18:47:05] -rw-------. 1 boinc boinc        95 Apr 26 18:45 pilot_heartbeat.json
[2026-04-26 18:47:05] -rw-------. 1 boinc boinc    285148 Apr 26 18:45 log.49545114._024480.job.log.tgz.1
[2026-04-26 18:47:05] -rw-------. 1 boinc boinc      6366 Apr 26 18:45 heartbeat_new.json
[2026-04-26 18:47:05] -rw-------. 1 boinc boinc      6257 Apr 26 18:45 heartbeat.json
[2026-04-26 18:47:05] -rw-r--r--. 1 boinc boinc      8192 Apr 26 18:47 boinc_mmap_file
[2026-04-26 18:47:05] -rw-r--r--. 1 boinc boinc        27 Apr 26 18:47 wrapper_checkpoint.txt
[2026-04-26 18:47:05] -rw-------. 1 boinc boinc      5324 Apr 26 18:47 pilotlog.txt
[2026-04-26 18:47:05] -rw-------. 1 boinc boinc    704626 Apr 26 18:47 log.49545114._024480.job.log.1
[2026-04-26 18:47:05] -rw-------. 1 boinc boinc       357 Apr 26 18:47 output.list
[2026-04-26 18:47:05] -rw-r--r--. 1 boinc boinc       410 Apr 26 18:47 runtime_log
[2026-04-26 18:47:05] -rw-------. 1 boinc boinc   1003520 Apr 26 18:47 result.tar.gz
[2026-04-26 18:47:05] -rw-r--r--. 1 boinc boinc      8827 Apr 26 18:47 runtime_log.err
[2026-04-26 18:47:05] -rw-------. 1 boinc boinc       663 Apr 26 18:47 4ac38df3b7a1.diag
[2026-04-26 18:47:05] -rw-r--r--. 1 boinc boinc     21062 Apr 26 18:47 stderr.txt
[2026-04-26 18:47:05] HITS file was successfully produced:
[2026-04-26 18:47:05] -rw-------. 1 boinc boinc 179734406 Apr 26 18:45 shared/HITS.pool.root.1
[2026-04-26 18:47:05]  *** Contents of shared directory: ***
[2026-04-26 18:47:05] total 449184
[2026-04-26 18:47:05] -rw-r--r--. 2 boinc boinc 278503275 Apr 26 16:41 ATLAS.root_0
[2026-04-26 18:47:05] -rw-r--r--. 2 boinc boinc     15667 Apr 26 16:41 start_atlas.sh
[2026-04-26 18:47:05] -rw-r--r--. 2 boinc boinc    697435 Apr 26 16:41 input.tar.gz
[2026-04-26 18:47:05] -rw-------. 1 boinc boinc 179734406 Apr 26 18:45 HITS.pool.root.1
[2026-04-26 18:47:05] -rw-------. 1 boinc boinc   1003520 Apr 26 18:47 result.tar.gz
18:47:06 (2555200): run_atlas exited; CPU time 28728.831906
18:47:06 (2555200): called boinc_finish(0)

</stderr_txt>
]]>

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