Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
15:25:07 (318552): wrapper (7.7.26015): starting
15:25:07 (318552): wrapper: running run_atlas (--nthreads 8)
[2026-04-25 15:25:07] Arguments: --nthreads 8
[2026-04-25 15:25:07] Threads: 8
[2026-04-25 15:25:07] Checking for CVMFS
[2026-04-25 15:25:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-25 15:25:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-25 15:25:07] Running cvmfs_config stat atlas.cern.ch
[2026-04-25 15:25:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-25 15:25:07] 2.13.3.0 205041 196 48684 158863 2 188 18157399 20480000 915 130560 0 431365 99.990 10992 72 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch DIRECT 1
[2026-04-25 15:25:07] CVMFS is ok
[2026-04-25 15:25:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-25 15:25:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-25 15:25:07] Small home clusters do not require a local http proxy but it is suggested if
[2026-04-25 15:25:07] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-04-25 15:25:07] Further information can be found at the LHC@home message board.
[2026-04-25 15:25:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-25 15:25:07] Checking for apptainer binary...
[2026-04-25 15:25:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-25 15:25:07] Running /usr/bin/apptainer --version
[2026-04-25 15:25:07] apptainer version 1.4.5
[2026-04-25 15:25:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-25 15:25:08] garage
[2026-04-25 15:25:08] apptainer works
[2026-04-25 15:25:08] Set ATHENA_PROC_NUMBER=8
[2026-04-25 15:25:08] Set ATHENA_CORE_NUMBER=8
[2026-04-25 15:25:08] Starting ATLAS job with PandaID=7105309065
[2026-04-25 15:25:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/garage/boinc4/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-25 16:13:27]  *** The last 200 lines of the pilot log: ***
[2026-04-25 16:13:27]  ddmendpoint=NDGF-T1_DATADISK
[2026-04-25 16:13:27]  ddmendpoint_alt=None
[2026-04-25 16:13:27]  direct_access_lan=False
[2026-04-25 16:13:27]  direct_access_wan=False
[2026-04-25 16:13:27]  domain=
[2026-04-25 16:13:27]  filesize=289352
[2026-04-25 16:13:27]  filetype=log
[2026-04-25 16:13:27]  guid=c07ce32c-4b22-4212-9eca-27ddcf0241ad
[2026-04-25 16:13:27]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-04-25 16:13:27]  is_altstaged=None
[2026-04-25 16:13:27]  is_tar=False
[2026-04-25 16:13:27]  lfn=log.49820244._013887.job.log.tgz.1
[2026-04-25 16:13:27]  mtime=0
[2026-04-25 16:13:27]  protocol_id=None
[2026-04-25 16:13:27]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-25 16:13:27]  replicas=None
[2026-04-25 16:13:27]  scope=mc23_13p6TeV
[2026-04-25 16:13:27]  status=None
[2026-04-25 16:13:27]  status_code=0
[2026-04-25 16:13:27]  storage_token=
[2026-04-25 16:13:27]  surl=/home/garage/boinc4/slots/0/PanDA_Pilot-7105309065/log.49820244._013887.job.log.tgz.1
[2026-04-25 16:13:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/71/61/log.49820244._013887.job.log.tgz.1
[2026-04-25 16:13:27]  workdir=None
[2026-04-25 16:13:27] ]
[2026-04-25 16:13:27] 2026-04-25 22:12:31,787 | INFO     | transferring file log.49820244._013887.job.log.tgz.1 from /home/garage/boinc4/slots/0/PanDA_Pilot-7105309065/log.49820244._013887.job.log.tgz.1 to /home/garage/boi
[2026-04-25 16:13:27] 2026-04-25 22:12:31,787 | INFO     | executing command: /usr/bin/env mv /home/garage/boinc4/slots/0/PanDA_Pilot-7105309065/log.49820244._013887.job.log.tgz.1 /home/garage/boinc4/slots/0/log.49820244._
[2026-04-25 16:13:27] 2026-04-25 22:12:31,794 | INFO     | adding to output.list: log.49820244._013887.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/71/61/log.49820244._013887.job.log.tg
[2026-04-25 16:13:27] 2026-04-25 22:12:31,794 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-25 16:13:27] 2026-04-25 22:12:31,794 | INFO     | summary of transferred files:
[2026-04-25 16:13:27] 2026-04-25 22:12:31,795 | INFO     |  -- lfn=log.49820244._013887.job.log.tgz.1, status_code=0, status=transferred
[2026-04-25 16:13:27] 2026-04-25 22:12:31,795 | INFO     | stage-out finished correctly
[2026-04-25 16:13:27] 2026-04-25 22:12:31,888 | INFO     | monitor loop #220: job 0:7105309065 is in state 'finished'
[2026-04-25 16:13:27] 2026-04-25 22:12:31,888 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-25 16:13:27] 2026-04-25 22:12:31,965 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-25 16:13:27] 2026-04-25 22:12:31,985 | INFO     | job 7105309065 has state=finished
[2026-04-25 16:13:27] 2026-04-25 22:12:31,985 | INFO     | preparing for final server update for job 7105309065 in state='finished'
[2026-04-25 16:13:27] 2026-04-25 22:12:31,985 | INFO     | reading metadata from: /home/garage/boinc4/slots/0/PanDA_Pilot-7105309065/jobReport.json
[2026-04-25 16:13:27] 2026-04-25 22:12:31,986 | INFO     | added worker_node to metadata from /home/garage/boinc4/slots/0/workernode_map.json
[2026-04-25 16:13:27] 2026-04-25 22:12:31,986 | INFO     | this job has now completed (state=finished)
[2026-04-25 16:13:27] 2026-04-25 22:12:31,986 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-25 16:13:27] 2026-04-25 22:12:31,986 | INFO     | log transfer has been attempted: DONE
[2026-04-25 16:13:27] 2026-04-25 22:12:31,986 | INFO     | job 7105309065 has finished - writing final server update
[2026-04-25 16:13:27] 2026-04-25 22:12:31,986 | INFO     | total number of processed events: 400 (read)
[2026-04-25 16:13:27] 2026-04-25 22:12:31,988 | INFO     | using path: /home/garage/boinc4/slots/0/PanDA_Pilot-7105309065/memory_monitor_summary.json (trf name=prmon)
[2026-04-25 16:13:27] 2026-04-25 22:12:31,988 | INFO     | extracted standard info from prmon json
[2026-04-25 16:13:27] 2026-04-25 22:12:31,988 | INFO     | extracted standard memory fields from prmon json
[2026-04-25 16:13:27] 2026-04-25 22:12:31,988 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-25 16:13:27] 2026-04-25 22:12:31,988 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-25 16:13:27] 2026-04-25 22:12:31,989 | INFO     | fitting pss+swap vs Time
[2026-04-25 16:13:27] 2026-04-25 22:12:31,989 | INFO     | sum of square deviations: 19832930.0
[2026-04-25 16:13:27] 2026-04-25 22:12:31,989 | INFO     | sum of deviations: 1583614320.5
[2026-04-25 16:13:27] 2026-04-25 22:12:31,989 | INFO     | mean x (centered): 0.0
[2026-04-25 16:13:27] 2026-04-25 22:12:31,989 | INFO     | mean y: 2864247.725
[2026-04-25 16:13:27] 2026-04-25 22:12:31,989 | INFO     | intersect: 2864247.725
[2026-04-25 16:13:27] 2026-04-25 22:12:31,989 | INFO     | chi2: 0.07602287989369834
[2026-04-25 16:13:27] 2026-04-25 22:12:31,989 | INFO     | current memory leak: 79.85 B/s (using 40 data points, chi2=0.08)
[2026-04-25 16:13:27] 2026-04-25 22:12:31,989 | INFO     | could have reported an average CPU frequency of 3168 MHz (5 samples)
[2026-04-25 16:13:27] 2026-04-25 22:12:31,989 | INFO     | ..............................
[2026-04-25 16:13:27] 2026-04-25 22:12:31,989 | INFO     | . Timing measurements:
[2026-04-25 16:13:27] 2026-04-25 22:12:31,989 | INFO     | . get job = 0 s
[2026-04-25 16:13:27] 2026-04-25 22:12:31,989 | INFO     | . initial setup = 6 s
[2026-04-25 16:13:27] 2026-04-25 22:12:31,989 | INFO     | . payload setup = 2 s
[2026-04-25 16:13:27] 2026-04-25 22:12:31,989 | INFO     | . stage-in = 0 s
[2026-04-25 16:13:27] 2026-04-25 22:12:31,989 | INFO     | . payload execution = 2816 s
[2026-04-25 16:13:27] 2026-04-25 22:12:31,989 | INFO     | . stage-out = 0 s
[2026-04-25 16:13:27] 2026-04-25 22:12:31,989 | INFO     | . log creation = 0 s
[2026-04-25 16:13:27] 2026-04-25 22:12:31,989 | INFO     | ..............................
[2026-04-25 16:13:27] 2026-04-25 22:12:32,007 | INFO     | 
[2026-04-25 16:13:27] 2026-04-25 22:12:32,007 | INFO     | job summary report
[2026-04-25 16:13:27] 2026-04-25 22:12:32,007 | INFO     | --------------------------------------------------
[2026-04-25 16:13:27] 2026-04-25 22:12:32,007 | INFO     | PanDA job id: 7105309065
[2026-04-25 16:13:27] 2026-04-25 22:12:32,007 | INFO     | task id: 49820244
[2026-04-25 16:13:27] 2026-04-25 22:12:32,007 | INFO     | errors: (none)
[2026-04-25 16:13:27] 2026-04-25 22:12:32,007 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-25 16:13:27] 2026-04-25 22:12:32,007 | INFO     | pilot state: finished 
[2026-04-25 16:13:27] 2026-04-25 22:12:32,007 | INFO     | transexitcode: 0
[2026-04-25 16:13:27] 2026-04-25 22:12:32,007 | INFO     | exeerrorcode: 0
[2026-04-25 16:13:27] 2026-04-25 22:12:32,007 | INFO     | exeerrordiag: 
[2026-04-25 16:13:27] 2026-04-25 22:12:32,007 | INFO     | exitcode: 0
[2026-04-25 16:13:27] 2026-04-25 22:12:32,007 | INFO     | exitmsg: OK
[2026-04-25 16:13:27] 2026-04-25 22:12:32,007 | INFO     | cpuconsumptiontime: 21258 s
[2026-04-25 16:13:27] 2026-04-25 22:12:32,007 | INFO     | nevents: 400
[2026-04-25 16:13:27] 2026-04-25 22:12:32,007 | INFO     | neventsw: 0
[2026-04-25 16:13:27] 2026-04-25 22:12:32,007 | INFO     | pid: 326982
[2026-04-25 16:13:27] 2026-04-25 22:12:32,007 | INFO     | pgrp: 326982
[2026-04-25 16:13:27] 2026-04-25 22:12:32,007 | INFO     | corecount: 8
[2026-04-25 16:13:27] 2026-04-25 22:12:32,007 | INFO     | event service: False
[2026-04-25 16:13:27] 2026-04-25 22:12:32,007 | INFO     | sizes: {0: 2276382, 11: 2276382, 2822: 2301807, 2823: 2311041}
[2026-04-25 16:13:27] 2026-04-25 22:12:32,007 | INFO     | --------------------------------------------------
[2026-04-25 16:13:27] 2026-04-25 22:12:32,007 | INFO     | 
[2026-04-25 16:13:27] 2026-04-25 22:12:32,007 | INFO     | executing command: ls -lF /home/garage/boinc4/slots/0
[2026-04-25 16:13:27] 2026-04-25 22:12:32,015 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-25 16:13:27] 2026-04-25 22:12:32,015 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-25 16:13:27] 2026-04-25 22:12:32,015 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-25 16:13:27] 2026-04-25 22:12:32,015 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-25 16:13:27] 2026-04-25 22:12:32,015 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-25 16:13:27] 2026-04-25 22:12:32,015 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-25 16:13:27] 2026-04-25 22:12:32,015 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-25 16:13:27] 2026-04-25 22:12:32,015 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-25 16:13:27] 2026-04-25 22:12:32,015 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-25 16:13:27] 2026-04-25 22:12:32,016 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-25 16:13:27] 2026-04-25 22:12:32,016 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-25 16:13:27] 2026-04-25 22:12:32,016 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-25 16:13:27] 2026-04-25 22:12:32,016 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-25 16:13:27] 2026-04-25 22:12:32,016 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-25 16:13:27] 2026-04-25 22:12:32,016 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-25 16:13:27] 2026-04-25 22:12:32,016 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-25 16:13:27] 2026-04-25 22:12:32,016 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-25 16:13:27] 2026-04-25 22:12:32,016 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-25 16:13:27] 2026-04-25 22:12:32,016 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-25 16:13:27] 2026-04-25 22:12:32,016 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-25 16:13:27] 2026-04-25 22:12:32,016 | INFO     | job 7105309065 has completed (purged errors)
[2026-04-25 16:13:27] 2026-04-25 22:12:32,016 | INFO     | overall cleanup function is called
[2026-04-25 16:13:27] 2026-04-25 22:12:33,022 | INFO     | --- collectZombieJob: --- 10, [326982]
[2026-04-25 16:13:27] 2026-04-25 22:12:33,022 | INFO     | zombie collector waiting for pid 326982
[2026-04-25 16:13:27] 2026-04-25 22:12:33,022 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-25 16:13:27] 2026-04-25 22:12:33,022 | INFO     | collected zombie processes
[2026-04-25 16:13:27] 2026-04-25 22:12:33,022 | INFO     | will attempt to kill all subprocesses of pid=326982
[2026-04-25 16:13:27] 2026-04-25 22:12:33,056 | INFO     | process IDs to be killed: [326982] (in reverse order)
[2026-04-25 16:13:27] 2026-04-25 22:12:33,086 | WARNING  | found no corresponding commands to process id(s)
[2026-04-25 16:13:27] 2026-04-25 22:12:33,086 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-25 16:13:27] 2026-04-25 22:12:33,087 | INFO     | did not find any defunct processes belonging to 326982
[2026-04-25 16:13:27] 2026-04-25 22:12:33,089 | INFO     | did not find any defunct processes belonging to 326982
[2026-04-25 16:13:27] 2026-04-25 22:12:33,089 | INFO     | Ready for new job
[2026-04-25 16:13:27] 2026-04-25 22:12:33,089 | INFO     | ***************************************
[2026-04-25 16:13:27] 2026-04-25 22:12:33,089 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-25 16:13:27] 2026-04-25 22:12:33,089 | INFO     | ***************************************
[2026-04-25 16:13:27] 2026-04-25 22:12:33,089 | INFO     | 
[2026-04-25 16:13:27] 2026-04-25 22:12:33,090 | INFO     | architecture information:
[2026-04-25 16:13:27] 2026-04-25 22:12:33,090 | INFO     | executing command: cat /etc/os-release
[2026-04-25 16:13:27] 2026-04-25 22:12:33,096 | INFO     | cat /etc/os-release:
[2026-04-25 16:13:27] NAME="CentOS Linux"
[2026-04-25 16:13:27] VERSION="7 (Core)"
[2026-04-25 16:13:27] ID="centos"
[2026-04-25 16:13:27] ID_LIKE="rhel fedora"
[2026-04-25 16:13:27] VERSION_ID="7"
[2026-04-25 16:13:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-25 16:13:27] ANSI_COLOR="0;31"
[2026-04-25 16:13:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-25 16:13:27] HOME_URL="https://www.centos.org/"
[2026-04-25 16:13:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-25 16:13:27] 
[2026-04-25 16:13:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-25 16:13:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-25 16:13:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-25 16:13:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-25 16:13:27] 
[2026-04-25 16:13:27] 2026-04-25 22:12:33,096 | INFO     | ***************************************
[2026-04-25 16:13:27] 2026-04-25 22:12:33,599 | INFO     | executing command: df -mP /home/garage/boinc4/slots/0
[2026-04-25 16:13:27] 2026-04-25 22:12:33,605 | INFO     | sufficient remaining disk space (371057491968 B)
[2026-04-25 16:13:27] 2026-04-25 22:12:33,605 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-25 16:13:27] 2026-04-25 22:12:33,605 | INFO     | current server update state: UPDATING_FINAL
[2026-04-25 16:13:27] 2026-04-25 22:12:33,605 | INFO     | update_server=False
[2026-04-25 16:13:27] 2026-04-25 22:12:33,605 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-25 16:13:27] 2026-04-25 22:12:33,605 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-25 16:13:27] 2026-04-25 22:12:33,606 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-25 16:13:27] 2026-04-25 22:12:33,606 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-25 16:13:27] 2026-04-25 22:12:33,606 | INFO     | aborting loop
[2026-04-25 16:13:27] 2026-04-25 22:12:33,620 | INFO     | all data control threads have been joined
[2026-04-25 16:13:27] 2026-04-25 22:12:34,524 | INFO     | all payload control threads have been joined
[2026-04-25 16:13:27] 2026-04-25 22:12:34,608 | INFO     | [job] retrieve thread has finished
[2026-04-25 16:13:27] 2026-04-25 22:12:34,611 | INFO     | [job] queue monitor thread has finished
[2026-04-25 16:13:27] 2026-04-25 22:12:34,611 | INFO     | [job] job monitor thread has finished
[2026-04-25 16:13:27] 2026-04-25 22:12:34,625 | INFO     | [data] control thread has finished
[2026-04-25 16:13:27] 2026-04-25 22:12:34,784 | INFO     | all job control threads have been joined
[2026-04-25 16:13:27] 2026-04-25 22:12:34,805 | INFO     | [payload] execute_payloads thread has finished
[2026-04-25 16:13:27] 2026-04-25 22:12:34,818 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-25 16:13:27] 2026-04-25 22:12:35,026 | INFO     | [payload] validate_post thread has finished
[2026-04-25 16:13:27] 2026-04-25 22:12:35,320 | INFO     | [job] validate thread has finished
[2026-04-25 16:13:27] 2026-04-25 22:12:35,345 | INFO     | [payload] validate_pre thread has finished
[2026-04-25 16:13:27] 2026-04-25 22:12:35,407 | INFO     | [job] create_data_payload thread has finished
[2026-04-25 16:13:27] 2026-04-25 22:12:35,437 | INFO     | [payload] failed_post thread has finished
[2026-04-25 16:13:27] 2026-04-25 22:12:35,487 | INFO     | [data] copytool_in thread has finished
[2026-04-25 16:13:27] 2026-04-25 22:12:35,529 | INFO     | [payload] control thread has finished
[2026-04-25 16:13:27] 2026-04-25 22:12:35,759 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-25 16:13:27] 2026-04-25 22:12:35,789 | INFO     | [job] control thread has finished
[2026-04-25 16:13:27] 2026-04-25 22:12:36,823 | INFO     | [data] copytool_out thread has finished
[2026-04-25 16:13:27] 2026-04-25 22:12:37,611 | INFO     | [data] queue_monitor thread has finished
[2026-04-25 16:13:27] 2026-04-25 22:13:03,233 | INFO     | PID=322413 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-25 16:13:27] 2026-04-25 22:13:03,233 | INFO     | found 0 job(s) in 20 queues
[2026-04-25 16:13:27] 2026-04-25 22:13:03,233 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-25 16:13:27] 2026-04-25 22:13:03,233 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-25 16:13:27] 2026-04-25 22:13:21,413 | INFO     | [monitor] cgroup control has ended
[2026-04-25 16:13:27] 2026-04-25 22:13:22,848 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131349309880128)>', '<ExcThread(monitor, started 131348756952832)>']
[2026-04-25 16:13:27] 2026-04-25 22:13:23,318 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-25 16:13:27] 2026-04-25 22:13:23,318 | INFO     | [monitor] control thread has ended
[2026-04-25 16:13:27] 2026-04-25 22:13:27,874 | INFO     | all workflow threads have been joined
[2026-04-25 16:13:27] 2026-04-25 22:13:27,874 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-25 16:13:27] 2026-04-25 22:13:27,874 | INFO     | traces error code: 0
[2026-04-25 16:13:27] 2026-04-25 22:13:27,874 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-25 16:13:27] 2026-04-25 22:13:27,910 [wrapper] ==== pilot stdout END ====
[2026-04-25 16:13:27] 2026-04-25 22:13:27,911 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-25 16:13:27] 2026-04-25 22:13:27,912 [wrapper] pilotpid: 322413
[2026-04-25 16:13:27] 2026-04-25 22:13:27,913 [wrapper] Pilot exit status: 0
[2026-04-25 16:13:27] 2026-04-25 22:13:27,917 [wrapper] pandaids: 7105309065
[2026-04-25 16:13:27] 2026-04-25 22:13:27,931 [wrapper] cleanup supervisor_pilot  332717 322414
[2026-04-25 16:13:27] 2026-04-25 22:13:27,933 [wrapper] Test setup, not cleaning
[2026-04-25 16:13:27] 2026-04-25 22:13:27,933 [wrapper] apfmon messages muted
[2026-04-25 16:13:27] 2026-04-25 22:13:27,934 [wrapper] ==== wrapper stdout END ====
[2026-04-25 16:13:27] 2026-04-25 22:13:27,935 [wrapper] ==== wrapper stderr END ====
[2026-04-25 16:13:27]  *** Error codes and diagnostics ***
[2026-04-25 16:13:27]     "exeErrorCode": 0,
[2026-04-25 16:13:27]     "pilotErrorCode": 0,
[2026-04-25 16:13:27]  *** Listing of results directory ***
[2026-04-25 16:13:27] total 2452560
[2026-04-25 16:13:27] -rw-r--r-- 1 garage garage     683926 Apr 25 12:21 pilot3.tar.gz
[2026-04-25 16:13:27] -rwx------ 1 garage garage      36322 Apr 25 13:00 runpilot2-wrapper.sh
[2026-04-25 16:13:27] -rw-r--r-- 1 garage garage       5631 Apr 25 13:00 queuedata.json
[2026-04-25 16:13:27] -rw-rw-r-- 1 garage garage        100 Apr 25 15:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-25 16:13:27] -rwxr-xr-x 1 garage garage       7986 Apr 25 15:25 run_atlas
[2026-04-25 16:13:27] -rw-rw-r-- 1 garage garage        105 Apr 25 15:25 job.xml
[2026-04-25 16:13:27] -rw-rw-r-- 1 garage garage       9814 Apr 25 15:25 init_data.xml
[2026-04-25 16:13:27] -rw-r--r-- 2 garage garage 2237576964 Apr 25 15:25 EVNT.49820242._000029.pool.root.1
[2026-04-25 16:13:27] -rw-r--r-- 2 garage garage      15667 Apr 25 15:25 start_atlas.sh
[2026-04-25 16:13:27] drwxrwx--x 2 garage garage       4096 Apr 25 15:25 shared
[2026-04-25 16:13:27] -rw-r--r-- 2 garage garage     697409 Apr 25 15:25 input.tar.gz
[2026-04-25 16:13:27] -rw-rw-r-- 1 garage garage          0 Apr 25 15:25 boinc_lockfile
[2026-04-25 16:13:27] -rw-rw-r-- 1 garage garage       2550 Apr 25 15:25 pandaJob.out
[2026-04-25 16:13:27] -rw------- 1 garage garage     997533 Apr 25 15:25 agis_schedconf.cvmfs.json
[2026-04-25 16:13:27] -rw------- 1 garage garage    1509089 Apr 25 15:25 agis_ddmendpoints.agis.ALL.json
[2026-04-25 16:13:27] -rw------- 1 garage garage        421 Apr 25 15:25 workernode_map.json
[2026-04-25 16:13:27] drwx------ 5 garage garage       4096 Apr 25 15:25 pilot3
[2026-04-25 16:13:27] -rw------- 1 garage garage  268515277 Apr 25 16:12 HITS.49820244._013887.pool.root.1
[2026-04-25 16:13:27] -rw-rw-r-- 1 garage garage        488 Apr 25 16:12 boinc_task_state.xml
[2026-04-25 16:13:27] -rw------- 1 garage garage       1021 Apr 25 16:12 memory_monitor_summary.json
[2026-04-25 16:13:27] -rw------- 1 garage garage         95 Apr 25 16:12 pilot_heartbeat.json
[2026-04-25 16:13:27] -rw------- 1 garage garage     289352 Apr 25 16:12 log.49820244._013887.job.log.tgz.1
[2026-04-25 16:13:27] -rw------- 1 garage garage       6295 Apr 25 16:12 heartbeat_new.json
[2026-04-25 16:13:27] -rw------- 1 garage garage       6186 Apr 25 16:12 heartbeat.json
[2026-04-25 16:13:27] -rw-rw-r-- 1 garage garage       8192 Apr 25 16:13 boinc_mmap_file
[2026-04-25 16:13:27] -rw-rw-r-- 1 garage garage         27 Apr 25 16:13 wrapper_checkpoint.txt
[2026-04-25 16:13:27] -rw------- 1 garage garage       4752 Apr 25 16:13 pilotlog.txt
[2026-04-25 16:13:27] -rw------- 1 garage garage     305356 Apr 25 16:13 log.49820244._013887.job.log.1
[2026-04-25 16:13:27] -rw------- 1 garage garage        357 Apr 25 16:13 output.list
[2026-04-25 16:13:27] -rw-rw-r-- 1 garage garage        410 Apr 25 16:13 runtime_log
[2026-04-25 16:13:27] -rw------- 1 garage garage     614400 Apr 25 16:13 result.tar.gz
[2026-04-25 16:13:27] -rw-rw-r-- 1 garage garage       8501 Apr 25 16:13 runtime_log.err
[2026-04-25 16:13:27] -rw------- 1 garage garage        650 Apr 25 16:13 0f4c513187b7.diag
[2026-04-25 16:13:27] -rw-rw-r-- 1 garage garage      20912 Apr 25 16:13 stderr.txt
[2026-04-25 16:13:27] HITS file was successfully produced:
[2026-04-25 16:13:27] -rw------- 1 garage garage 268515277 Apr 25 16:12 shared/HITS.pool.root.1
[2026-04-25 16:13:27]  *** Contents of shared directory: ***
[2026-04-25 16:13:27] total 2448668
[2026-04-25 16:13:27] -rw-r--r-- 2 garage garage 2237576964 Apr 25 15:25 ATLAS.root_0
[2026-04-25 16:13:27] -rw-r--r-- 2 garage garage      15667 Apr 25 15:25 start_atlas.sh
[2026-04-25 16:13:27] -rw-r--r-- 2 garage garage     697409 Apr 25 15:25 input.tar.gz
[2026-04-25 16:13:27] -rw------- 1 garage garage  268515277 Apr 25 16:12 HITS.pool.root.1
[2026-04-25 16:13:27] -rw------- 1 garage garage     614400 Apr 25 16:13 result.tar.gz
16:13:29 (318552): run_atlas exited; CPU time 21267.436801
16:13:29 (318552): called boinc_finish(0)

</stderr_txt>
]]>

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