Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:04:12 (22568): wrapper (7.7.26015): starting
15:04:12 (22568): wrapper: running run_atlas (--nthreads 8)
[2026-04-25 15:04:12] Arguments: --nthreads 8
[2026-04-25 15:04:12] Threads: 8
[2026-04-25 15:04:12] Checking for CVMFS
[2026-04-25 15:04:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-25 15:04:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-25 15:04:17] Running cvmfs_config stat atlas.cern.ch
[2026-04-25 15:04:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-25 15:04:18] 2.11.2.0 19479 14144 96676 158849 2 11 19855721 25165824 96 130560 0 5455851 99.938 5053573 14790 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-25 15:04:18] CVMFS is ok
[2026-04-25 15:04:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-25 15:04:18] Checking for apptainer binary...
[2026-04-25 15:04:18] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-25 15:04:18] Running /usr/bin/apptainer --version
[2026-04-25 15:04:18] apptainer version 1.3.2-1.el7
[2026-04-25 15:04:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-25 15:04:30] cg-vwn451.simple-grid.lan
[2026-04-25 15:04:30] apptainer works
[2026-04-25 15:04:30] Set ATHENA_PROC_NUMBER=8
[2026-04-25 15:04:30] Set ATHENA_CORE_NUMBER=8
[2026-04-25 15:04:30] Starting ATLAS job with PandaID=7114612090
[2026-04-25 15:04:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/26 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-25 20:53:39]  *** The last 200 lines of the pilot log: ***
[2026-04-25 20:53:39] 2026-04-25 18:52:32,839 | INFO     | log transfer has been attempted: DONE
[2026-04-25 20:53:39] 2026-04-25 18:52:32,839 | INFO     | job 7114612090 has finished - writing final server update
[2026-04-25 20:53:39] 2026-04-25 18:52:32,840 | INFO     | total number of processed events: 400 (read)
[2026-04-25 20:53:39] 2026-04-25 18:52:32,842 | INFO     | using path: /var/lib/boinc/slots/26/PanDA_Pilot-7114612090/memory_monitor_summary.json (trf name=prmon)
[2026-04-25 20:53:39] 2026-04-25 18:52:32,842 | INFO     | extracted standard info from prmon json
[2026-04-25 20:53:39] 2026-04-25 18:52:32,842 | INFO     | extracted standard memory fields from prmon json
[2026-04-25 20:53:39] 2026-04-25 18:52:32,843 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-25 20:53:39] 2026-04-25 18:52:32,843 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-25 20:53:39] 2026-04-25 18:52:32,849 | INFO     | fitting pss+swap vs Time
[2026-04-25 20:53:39] 2026-04-25 18:52:32,850 | INFO     | sum of square deviations: 11042365180.0
[2026-04-25 20:53:39] 2026-04-25 18:52:32,854 | INFO     | sum of deviations: 135090462872.0
[2026-04-25 20:53:39] 2026-04-25 18:52:32,854 | INFO     | mean x (centered): 0.0
[2026-04-25 20:53:39] 2026-04-25 18:52:32,854 | INFO     | mean y: 2477485.088145897
[2026-04-25 20:53:39] 2026-04-25 18:52:32,854 | INFO     | intersect: 2477485.088145897
[2026-04-25 20:53:39] 2026-04-25 18:52:32,855 | INFO     | chi2: 9.104265116548044
[2026-04-25 20:53:39] 2026-04-25 18:52:32,855 | INFO     | sum of square deviations: 10546523325.0
[2026-04-25 20:53:39] 2026-04-25 18:52:32,859 | INFO     | sum of deviations: 154970503263.49997
[2026-04-25 20:53:39] 2026-04-25 18:52:32,859 | INFO     | mean x (centered): 0.0
[2026-04-25 20:53:39] 2026-04-25 18:52:32,859 | INFO     | mean y: 2483515.8364197533
[2026-04-25 20:53:39] 2026-04-25 18:52:32,859 | INFO     | intersect: 2483515.8364197533
[2026-04-25 20:53:39] 2026-04-25 18:52:32,860 | INFO     | chi2: 8.3996866396804
[2026-04-25 20:53:39] 2026-04-25 18:52:32,860 | INFO     | current chi2=8.3996866396804 (change=7.738993404168247 %)
[2026-04-25 20:53:39] 2026-04-25 18:52:32,860 | INFO     | right removable region: 323
[2026-04-25 20:53:39] 2026-04-25 18:52:32,861 | INFO     | sum of square deviations: 10546523325.0
[2026-04-25 20:53:39] 2026-04-25 18:52:32,864 | INFO     | sum of deviations: 15083437548.000008
[2026-04-25 20:53:39] 2026-04-25 18:52:32,865 | INFO     | mean x (centered): 0.0
[2026-04-25 20:53:39] 2026-04-25 18:52:32,865 | INFO     | mean y: 2514382.8703703703
[2026-04-25 20:53:39] 2026-04-25 18:52:32,865 | INFO     | intersect: 2514382.8703703703
[2026-04-25 20:53:39] 2026-04-25 18:52:32,865 | INFO     | chi2: 3.8587029909501505
[2026-04-25 20:53:39] 2026-04-25 18:52:32,866 | INFO     | current chi2=3.8587029909501505 (change=57.61653531006565 %)
[2026-04-25 20:53:39] 2026-04-25 18:52:32,866 | INFO     | sum of square deviations: 10065751520.0
[2026-04-25 20:53:39] 2026-04-25 18:52:32,873 | INFO     | sum of deviations: -73629971920.0
[2026-04-25 20:53:39] 2026-04-25 18:52:32,874 | INFO     | mean x (centered): 0.0
[2026-04-25 20:53:39] 2026-04-25 18:52:32,874 | INFO     | mean y: 2542494.489028213
[2026-04-25 20:53:39] 2026-04-25 18:52:32,874 | INFO     | intersect: 2542494.489028213
[2026-04-25 20:53:39] 2026-04-25 18:52:32,874 | INFO     | chi2: 1.129163969937927
[2026-04-25 20:53:39] 2026-04-25 18:52:32,875 | INFO     | current chi2=1.129163969937927 (change=70.73721474323976 %)
[2026-04-25 20:53:39] 2026-04-25 18:52:32,875 | INFO     | sum of square deviations: 9599817202.5
[2026-04-25 20:53:39] 2026-04-25 18:52:32,879 | INFO     | sum of deviations: -87515029179.5
[2026-04-25 20:53:39] 2026-04-25 18:52:32,879 | INFO     | mean x (centered): 0.0
[2026-04-25 20:53:39] 2026-04-25 18:52:32,879 | INFO     | mean y: 2547016.3853503186
[2026-04-25 20:53:39] 2026-04-25 18:52:32,879 | INFO     | intersect: 2547016.3853503186
[2026-04-25 20:53:39] 2026-04-25 18:52:32,880 | INFO     | chi2: 1.0144169501607854
[2026-04-25 20:53:39] 2026-04-25 18:52:32,880 | INFO     | current chi2=1.0144169501607854 (change=10.162121962096398 %)
[2026-04-25 20:53:39] 2026-04-25 18:52:32,880 | INFO     | left removable region: 15
[2026-04-25 20:53:39] 2026-04-25 18:52:32,880 | INFO     | sum of square deviations: 9059954057.0
[2026-04-25 20:53:39] 2026-04-25 18:52:32,883 | INFO     | sum of deviations: -65007141880.50001
[2026-04-25 20:53:39] 2026-04-25 18:52:32,883 | INFO     | mean x (centered): 0.0
[2026-04-25 20:53:39] 2026-04-25 18:52:32,884 | INFO     | mean y: 2554531.2305194805
[2026-04-25 20:53:39] 2026-04-25 18:52:32,884 | INFO     | intersect: 2554531.2305194805
[2026-04-25 20:53:39] 2026-04-25 18:52:32,884 | INFO     | chi2: 0.2290379712325785
[2026-04-25 20:53:39] 2026-04-25 18:52:32,884 | INFO     | current memory leak: -7.18 B/s (using 308 data points, chi2=0.23)
[2026-04-25 20:53:39] 2026-04-25 18:52:32,885 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2026-04-25 20:53:39] 2026-04-25 18:52:32,885 | INFO     | ..............................
[2026-04-25 20:53:39] 2026-04-25 18:52:32,885 | INFO     | . Timing measurements:
[2026-04-25 20:53:39] 2026-04-25 18:52:32,885 | INFO     | . get job = 0 s
[2026-04-25 20:53:39] 2026-04-25 18:52:32,886 | INFO     | . initial setup = 118 s
[2026-04-25 20:53:39] 2026-04-25 18:52:32,886 | INFO     | . payload setup = 304 s
[2026-04-25 20:53:39] 2026-04-25 18:52:32,886 | INFO     | . stage-in = 0 s
[2026-04-25 20:53:39] 2026-04-25 18:52:32,886 | INFO     | . payload execution = 20168 s
[2026-04-25 20:53:39] 2026-04-25 18:52:32,886 | INFO     | . stage-out = 3 s
[2026-04-25 20:53:39] 2026-04-25 18:52:32,886 | INFO     | . log creation = 1 s
[2026-04-25 20:53:39] 2026-04-25 18:52:32,886 | INFO     | ..............................
[2026-04-25 20:53:39] 2026-04-25 18:52:33,035 | INFO     | 
[2026-04-25 20:53:39] 2026-04-25 18:52:33,035 | INFO     | job summary report
[2026-04-25 20:53:39] 2026-04-25 18:52:33,035 | INFO     | --------------------------------------------------
[2026-04-25 20:53:39] 2026-04-25 18:52:33,035 | INFO     | PanDA job id: 7114612090
[2026-04-25 20:53:39] 2026-04-25 18:52:33,035 | INFO     | task id: 49863694
[2026-04-25 20:53:39] 2026-04-25 18:52:33,036 | INFO     | errors: (none)
[2026-04-25 20:53:39] 2026-04-25 18:52:33,036 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-25 20:53:39] 2026-04-25 18:52:33,036 | INFO     | pilot state: finished 
[2026-04-25 20:53:39] 2026-04-25 18:52:33,036 | INFO     | transexitcode: 0
[2026-04-25 20:53:39] 2026-04-25 18:52:33,036 | INFO     | exeerrorcode: 0
[2026-04-25 20:53:39] 2026-04-25 18:52:33,036 | INFO     | exeerrordiag: 
[2026-04-25 20:53:39] 2026-04-25 18:52:33,036 | INFO     | exitcode: 0
[2026-04-25 20:53:39] 2026-04-25 18:52:33,036 | INFO     | exitmsg: OK
[2026-04-25 20:53:39] 2026-04-25 18:52:33,036 | INFO     | cpuconsumptiontime: 77005 s
[2026-04-25 20:53:39] 2026-04-25 18:52:33,036 | INFO     | nevents: 400
[2026-04-25 20:53:39] 2026-04-25 18:52:33,036 | INFO     | neventsw: 0
[2026-04-25 20:53:39] 2026-04-25 18:52:33,036 | INFO     | pid: 31074
[2026-04-25 20:53:39] 2026-04-25 18:52:33,037 | INFO     | pgrp: 31074
[2026-04-25 20:53:39] 2026-04-25 18:52:33,037 | INFO     | corecount: 8
[2026-04-25 20:53:39] 2026-04-25 18:52:33,037 | INFO     | event service: False
[2026-04-25 20:53:39] 2026-04-25 18:52:33,037 | INFO     | sizes: {0: 2274661, 1: 2274689, 2: 2276518, 12: 2276518, 20478: 2310034, 20483: 2319034, 20486: 2319218, 20487: 2319412}
[2026-04-25 20:53:39] 2026-04-25 18:52:33,037 | INFO     | --------------------------------------------------
[2026-04-25 20:53:39] 2026-04-25 18:52:33,037 | INFO     | 
[2026-04-25 20:53:39] 2026-04-25 18:52:33,037 | INFO     | executing command: ls -lF /var/lib/boinc/slots/26
[2026-04-25 20:53:39] 2026-04-25 18:52:33,647 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-25 20:53:39] 2026-04-25 18:52:33,648 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-25 20:53:39] 2026-04-25 18:52:33,648 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-25 20:53:39] 2026-04-25 18:52:33,648 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-25 20:53:39] 2026-04-25 18:52:33,648 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-25 20:53:39] 2026-04-25 18:52:33,648 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-25 20:53:39] 2026-04-25 18:52:33,648 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-25 20:53:39] 2026-04-25 18:52:33,648 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-25 20:53:39] 2026-04-25 18:52:33,648 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-25 20:53:39] 2026-04-25 18:52:33,648 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-25 20:53:39] 2026-04-25 18:52:33,648 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-25 20:53:39] 2026-04-25 18:52:33,649 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-25 20:53:39] 2026-04-25 18:52:33,649 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-25 20:53:39] 2026-04-25 18:52:33,649 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-25 20:53:39] 2026-04-25 18:52:33,649 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-25 20:53:39] 2026-04-25 18:52:33,649 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-25 20:53:39] 2026-04-25 18:52:33,649 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-25 20:53:39] 2026-04-25 18:52:33,649 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-25 20:53:39] 2026-04-25 18:52:33,649 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-25 20:53:39] 2026-04-25 18:52:33,649 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-25 20:53:39] 2026-04-25 18:52:33,649 | INFO     | job 7114612090 has completed (purged errors)
[2026-04-25 20:53:39] 2026-04-25 18:52:33,650 | INFO     | overall cleanup function is called
[2026-04-25 20:53:39] 2026-04-25 18:52:34,313 | INFO     | PID=26614 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-25 20:53:39] 2026-04-25 18:52:34,313 | INFO     | .. there are 2 such processes running
[2026-04-25 20:53:39] 2026-04-25 18:52:34,658 | INFO     | --- collectZombieJob: --- 10, [31074]
[2026-04-25 20:53:39] 2026-04-25 18:52:34,658 | INFO     | zombie collector waiting for pid 31074
[2026-04-25 20:53:39] 2026-04-25 18:52:34,658 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-25 20:53:39] 2026-04-25 18:52:34,658 | INFO     | collected zombie processes
[2026-04-25 20:53:39] 2026-04-25 18:52:34,659 | INFO     | will attempt to kill all subprocesses of pid=31074
[2026-04-25 20:53:39] 2026-04-25 18:52:34,715 | INFO     | process IDs to be killed: [31074] (in reverse order)
[2026-04-25 20:53:39] 2026-04-25 18:52:35,701 | WARNING  | found no corresponding commands to process id(s)
[2026-04-25 20:53:39] 2026-04-25 18:52:35,701 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-25 20:53:39] 2026-04-25 18:52:35,703 | INFO     | did not find any defunct processes belonging to 31074
[2026-04-25 20:53:39] 2026-04-25 18:52:35,705 | INFO     | did not find any defunct processes belonging to 31074
[2026-04-25 20:53:39] 2026-04-25 18:52:35,705 | INFO     | Ready for new job
[2026-04-25 20:53:39] 2026-04-25 18:52:35,707 | INFO     | ***************************************
[2026-04-25 20:53:39] 2026-04-25 18:52:35,707 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-25 20:53:39] 2026-04-25 18:52:35,707 | INFO     | ***************************************
[2026-04-25 20:53:39] 2026-04-25 18:52:35,707 | INFO     | 
[2026-04-25 20:53:39] 2026-04-25 18:52:35,708 | INFO     | pilot is running in a VM
[2026-04-25 20:53:39] 2026-04-25 18:52:35,708 | INFO     | architecture information:
[2026-04-25 20:53:39] 2026-04-25 18:52:35,716 | INFO     | executing command: cat /etc/os-release
[2026-04-25 20:53:39] 2026-04-25 18:52:35,949 | INFO     | cat /etc/os-release:
[2026-04-25 20:53:39] NAME="CentOS Linux"
[2026-04-25 20:53:39] VERSION="7 (Core)"
[2026-04-25 20:53:39] ID="centos"
[2026-04-25 20:53:39] ID_LIKE="rhel fedora"
[2026-04-25 20:53:39] VERSION_ID="7"
[2026-04-25 20:53:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-25 20:53:39] ANSI_COLOR="0;31"
[2026-04-25 20:53:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-25 20:53:39] HOME_URL="https://www.centos.org/"
[2026-04-25 20:53:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-25 20:53:39] 
[2026-04-25 20:53:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-25 20:53:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-25 20:53:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-25 20:53:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-25 20:53:39] 
[2026-04-25 20:53:39] 2026-04-25 18:52:35,950 | INFO     | ***************************************
[2026-04-25 20:53:39] 2026-04-25 18:52:36,453 | INFO     | executing command: df -mP /var/lib/boinc/slots/26
[2026-04-25 20:53:39] 2026-04-25 18:52:36,615 | INFO     | sufficient remaining disk space (496269000704 B)
[2026-04-25 20:53:39] 2026-04-25 18:52:36,616 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-25 20:53:39] 2026-04-25 18:52:36,616 | INFO     | current server update state: UPDATING_FINAL
[2026-04-25 20:53:39] 2026-04-25 18:52:36,616 | INFO     | update_server=False
[2026-04-25 20:53:39] 2026-04-25 18:52:36,616 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-25 20:53:39] 2026-04-25 18:52:36,621 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-25 20:53:39] 2026-04-25 18:52:36,621 | INFO     | aborting loop
[2026-04-25 20:53:39] 2026-04-25 18:52:36,878 | INFO     | all job control threads have been joined
[2026-04-25 20:53:39] 2026-04-25 18:52:36,910 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-25 20:53:39] 2026-04-25 18:52:37,083 | INFO     | all data control threads have been joined
[2026-04-25 20:53:39] 2026-04-25 18:52:37,496 | INFO     | all payload control threads have been joined
[2026-04-25 20:53:39] 2026-04-25 18:52:37,503 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-25 20:53:39] 2026-04-25 18:52:37,622 | INFO     | [job] retrieve thread has finished
[2026-04-25 20:53:39] 2026-04-25 18:52:37,627 | INFO     | [job] job monitor thread has finished
[2026-04-25 20:53:39] 2026-04-25 18:52:37,884 | INFO     | [job] control thread has finished
[2026-04-25 20:53:39] 2026-04-25 18:52:37,964 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-25 20:53:39] 2026-04-25 18:52:38,044 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-25 20:53:39] 2026-04-25 18:52:38,089 | INFO     | [data] control thread has finished
[2026-04-25 20:53:39] 2026-04-25 18:52:38,196 | INFO     | [payload] execute_payloads thread has finished
[2026-04-25 20:53:39] 2026-04-25 18:52:38,223 | INFO     | [payload] validate_post thread has finished
[2026-04-25 20:53:39] 2026-04-25 18:52:38,265 | INFO     | [job] create_data_payload thread has finished
[2026-04-25 20:53:39] 2026-04-25 18:52:38,454 | INFO     | [data] copytool_in thread has finished
[2026-04-25 20:53:39] 2026-04-25 18:52:38,502 | INFO     | [payload] control thread has finished
[2026-04-25 20:53:39] 2026-04-25 18:52:38,514 | INFO     | [payload] validate_pre thread has finished
[2026-04-25 20:53:39] 2026-04-25 18:52:38,917 | INFO     | [data] copytool_out thread has finished
[2026-04-25 20:53:39] 2026-04-25 18:52:38,985 | INFO     | [job] validate thread has finished
[2026-04-25 20:53:39] 2026-04-25 18:52:39,004 | INFO     | [payload] failed_post thread has finished
[2026-04-25 20:53:39] 2026-04-25 18:52:39,050 | INFO     | [job] queue monitor thread has finished
[2026-04-25 20:53:39] 2026-04-25 18:52:41,512 | INFO     | [data] queue_monitor thread has finished
[2026-04-25 20:53:39] 2026-04-25 18:53:06,390 | INFO     | PID=26614 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-25 20:53:39] 2026-04-25 18:53:06,391 | INFO     | .. there are 2 such processes running
[2026-04-25 20:53:39] 2026-04-25 18:53:06,396 | INFO     | found 0 job(s) in 20 queues
[2026-04-25 20:53:39] 2026-04-25 18:53:06,396 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-25 20:53:39] 2026-04-25 18:53:06,396 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-25 20:53:39] 2026-04-25 18:53:28,581 | INFO     | [monitor] cgroup control has ended
[2026-04-25 20:53:39] 2026-04-25 18:53:30,006 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139776628483904)>', '<ExcThread(monitor, started 139776179021568)>']
[2026-04-25 20:53:39] 2026-04-25 18:53:30,539 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-25 20:53:39] 2026-04-25 18:53:30,539 | INFO     | [monitor] control thread has ended
[2026-04-25 20:53:39] 2026-04-25 18:53:35,032 | INFO     | all workflow threads have been joined
[2026-04-25 20:53:39] 2026-04-25 18:53:35,032 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-25 20:53:39] 2026-04-25 18:53:35,032 | INFO     | traces error code: 0
[2026-04-25 20:53:39] 2026-04-25 18:53:35,033 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-25 20:53:39] 2026-04-25 18:53:35,331 [wrapper] ==== pilot stdout END ====
[2026-04-25 20:53:39] 2026-04-25 18:53:35,418 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-25 20:53:39] 2026-04-25 18:53:35,470 [wrapper] pilotpid: 26614
[2026-04-25 20:53:39] 2026-04-25 18:53:35,597 [wrapper] Pilot exit status: 0
[2026-04-25 20:53:39] 2026-04-25 18:53:36,118 [wrapper] pandaids: 7114612090
[2026-04-25 20:53:39] 2026-04-25 18:53:37,343 [wrapper] cleanup supervisor_pilot  6561 26615
[2026-04-25 20:53:39] 2026-04-25 18:53:37,479 [wrapper] Test setup, not cleaning
[2026-04-25 20:53:39] 2026-04-25 18:53:37,597 [wrapper] apfmon messages muted
[2026-04-25 20:53:39] 2026-04-25 18:53:37,732 [wrapper] ==== wrapper stdout END ====
[2026-04-25 20:53:39] 2026-04-25 18:53:37,832 [wrapper] ==== wrapper stderr END ====
[2026-04-25 20:53:39]  *** Error codes and diagnostics ***
[2026-04-25 20:53:39]     "exeErrorCode": 0,
[2026-04-25 20:53:39]     "pilotErrorCode": 0,
[2026-04-25 20:53:39]  *** Listing of results directory ***
[2026-04-25 20:53:39] total 472976
[2026-04-25 20:53:39] -rw-r--r--. 1 boinc boinc    683926 Apr 25 13:58 pilot3.tar.gz
[2026-04-25 20:53:39] -rwx------. 1 boinc boinc     36322 Apr 25 14:12 runpilot2-wrapper.sh
[2026-04-25 20:53:39] -rw-r--r--. 1 boinc boinc      5631 Apr 25 14:18 queuedata.json
[2026-04-25 20:53:39] -rw-r--r--. 1 boinc boinc       100 Apr 25 15:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-25 20:53:39] -rwxr-xr-x. 1 boinc boinc      7986 Apr 25 15:04 run_atlas
[2026-04-25 20:53:39] -rw-r--r--. 1 boinc boinc       105 Apr 25 15:04 job.xml
[2026-04-25 20:53:39] -rw-r--r--. 1 boinc boinc      6307 Apr 25 15:04 init_data.xml
[2026-04-25 20:53:39] -rw-r--r--. 2 boinc boinc 263336993 Apr 25 15:04 EVNT.49863691._000003.pool.root.1
[2026-04-25 20:53:39] drwxrwx--x. 2 boinc boinc        68 Apr 25 15:04 shared
[2026-04-25 20:53:39] -rw-r--r--. 2 boinc boinc    697411 Apr 25 15:04 input.tar.gz
[2026-04-25 20:53:39] -rw-r--r--. 2 boinc boinc     15667 Apr 25 15:04 start_atlas.sh
[2026-04-25 20:53:39] -rw-r--r--. 1 boinc boinc         0 Apr 25 15:04 boinc_lockfile
[2026-04-25 20:53:39] -rw-r--r--. 1 boinc boinc      2578 Apr 25 15:04 pandaJob.out
[2026-04-25 20:53:39] -rw-------. 1 boinc boinc       415 Apr 25 15:10 workernode_map.json
[2026-04-25 20:53:39] -rw-------. 1 boinc boinc    997243 Apr 25 15:10 agis_schedconf.cvmfs.json
[2026-04-25 20:53:39] drwx------. 5 boinc boinc      4096 Apr 25 15:10 pilot3
[2026-04-25 20:53:39] -rw-------. 1 boinc boinc 212216432 Apr 25 20:50 HITS.49863694._000054.pool.root.1
[2026-04-25 20:53:39] -rw-r--r--. 1 boinc boinc       488 Apr 25 20:51 boinc_task_state.xml
[2026-04-25 20:53:39] -rw-------. 1 boinc boinc      1012 Apr 25 20:52 memory_monitor_summary.json
[2026-04-25 20:53:39] -rw-------. 1 boinc boinc   1509089 Apr 25 20:52 agis_ddmendpoints.agis.ALL.json
[2026-04-25 20:53:39] -rw-------. 1 boinc boinc    437567 Apr 25 20:52 log.49863694._000054.job.log.tgz.1
[2026-04-25 20:53:39] -rw-------. 1 boinc boinc      6328 Apr 25 20:52 heartbeat_new.json
[2026-04-25 20:53:39] -rw-------. 1 boinc boinc      6219 Apr 25 20:52 heartbeat.json
[2026-04-25 20:53:39] -rw-------. 1 boinc boinc        95 Apr 25 20:53 pilot_heartbeat.json
[2026-04-25 20:53:39] -rw-r--r--. 1 boinc boinc      8192 Apr 25 20:53 boinc_mmap_file
[2026-04-25 20:53:39] -rw-r--r--. 1 boinc boinc        28 Apr 25 20:53 wrapper_checkpoint.txt
[2026-04-25 20:53:39] -rw-------. 1 boinc boinc      4884 Apr 25 20:53 pilotlog.txt
[2026-04-25 20:53:39] -rw-------. 1 boinc boinc   1889180 Apr 25 20:53 log.49863694._000054.job.log.1
[2026-04-25 20:53:39] -rw-------. 1 boinc boinc       357 Apr 25 20:53 output.list
[2026-04-25 20:53:39] -rw-r--r--. 1 boinc boinc       410 Apr 25 20:53 runtime_log
[2026-04-25 20:53:39] -rw-------. 1 boinc boinc   2344960 Apr 25 20:53 result.tar.gz
[2026-04-25 20:53:39] -rw-r--r--. 1 boinc boinc      8455 Apr 25 20:53 runtime_log.err
[2026-04-25 20:53:39] -rw-------. 1 boinc boinc       656 Apr 25 20:53 af900ea64f7b.diag
[2026-04-25 20:53:39] -rw-r--r--. 1 boinc boinc     20722 Apr 25 20:53 stderr.txt
[2026-04-25 20:53:40] HITS file was successfully produced:
[2026-04-25 20:53:40] -rw-------. 1 boinc boinc 212216432 Apr 25 20:50 shared/HITS.pool.root.1
[2026-04-25 20:53:40]  *** Contents of shared directory: ***
[2026-04-25 20:53:40] total 467404
[2026-04-25 20:53:40] -rw-r--r--. 2 boinc boinc 263336993 Apr 25 15:04 ATLAS.root_0
[2026-04-25 20:53:40] -rw-r--r--. 2 boinc boinc    697411 Apr 25 15:04 input.tar.gz
[2026-04-25 20:53:40] -rw-r--r--. 2 boinc boinc     15667 Apr 25 15:04 start_atlas.sh
[2026-04-25 20:53:40] -rw-------. 1 boinc boinc 212216432 Apr 25 20:50 HITS.pool.root.1
[2026-04-25 20:53:40] -rw-------. 1 boinc boinc   2344960 Apr 25 20:53 result.tar.gz
20:53:41 (22568): run_atlas exited; CPU time 77196.666530
20:53:41 (22568): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN