Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:00:52 (2461804): wrapper (7.7.26015): starting
01:00:52 (2461804): wrapper: running run_atlas (--nthreads 12)
[2026-04-26 01:00:52] Arguments: --nthreads 12
[2026-04-26 01:00:52] Threads: 12
[2026-04-26 01:00:52] Checking for CVMFS
[2026-04-26 01:00:52] No cvmfs_config command found, will try listing directly
[2026-04-26 01:00:52] CVMFS is ok
[2026-04-26 01:00:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-26 01:00:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-26 01:00:52] Further information can be found at the LHC@home message board.
[2026-04-26 01:00:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-26 01:00:52] Checking for apptainer binary...
[2026-04-26 01:00:52] which: no apptainer in ((null))
[2026-04-26 01:00:52] apptainer is not installed, using version from CVMFS
[2026-04-26 01:00:52] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-26 01:00:52] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot180/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut22.grid.cesnet.cz
[2026-04-26 01:00:52] apptainer works
[2026-04-26 01:00:52] Set ATHENA_PROC_NUMBER=12
[2026-04-26 01:00:52] Set ATHENA_CORE_NUMBER=12
[2026-04-26 01:00:52] Starting ATLAS job with PandaID=7098003993
[2026-04-26 01:00:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot180/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-26 01:22:07]  *** The last 200 lines of the pilot log: ***
[2026-04-26 01:22:07]  filesize=341822
[2026-04-26 01:22:07]  filetype=log
[2026-04-26 01:22:07]  guid=a696a820-c917-4ec6-8cf4-d9935a10615a
[2026-04-26 01:22:07]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-04-26 01:22:07]  is_altstaged=None
[2026-04-26 01:22:07]  is_tar=False
[2026-04-26 01:22:07]  lfn=log.49545114._030506.job.log.tgz.1
[2026-04-26 01:22:07]  mtime=0
[2026-04-26 01:22:07]  protocol_id=None
[2026-04-26 01:22:07]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-26 01:22:07]  replicas=None
[2026-04-26 01:22:07]  scope=mc23_13p6TeV
[2026-04-26 01:22:07]  status=None
[2026-04-26 01:22:07]  status_code=0
[2026-04-26 01:22:07]  storage_token=
[2026-04-26 01:22:07]  surl=/var/lib/boinc/var/slot180/slots/1/PanDA_Pilot-7098003993/log.49545114._030506.job.log.tgz.1
[2026-04-26 01:22:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/35/e1/log.49545114._030506.job.log.tgz.1
[2026-04-26 01:22:07]  workdir=None
[2026-04-26 01:22:07] ]
[2026-04-26 01:22:07] 2026-04-25 23:21:17,002 | INFO     | transferring file log.49545114._030506.job.log.tgz.1 from /var/lib/boinc/var/slot180/slots/1/PanDA_Pilot-7098003993/log.49545114._030506.job.log.tgz.1 to /var/lib/
[2026-04-26 01:22:07] 2026-04-25 23:21:17,002 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot180/slots/1/PanDA_Pilot-7098003993/log.49545114._030506.job.log.tgz.1 /var/lib/boinc/var/slot180/slots/1/
[2026-04-26 01:22:07] 2026-04-25 23:21:17,011 | INFO     | adding to output.list: log.49545114._030506.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/35/e1/log.49545114._030506.job.log.tg
[2026-04-26 01:22:07] 2026-04-25 23:21:17,011 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-26 01:22:07] 2026-04-25 23:21:17,011 | INFO     | summary of transferred files:
[2026-04-26 01:22:07] 2026-04-25 23:21:17,011 | INFO     |  -- lfn=log.49545114._030506.job.log.tgz.1, status_code=0, status=transferred
[2026-04-26 01:22:07] 2026-04-25 23:21:17,012 | INFO     | stage-out finished correctly
[2026-04-26 01:22:07] 2026-04-25 23:21:19,024 | WARNING  | process 2473054 can no longer be monitored (due to stat problems) - aborting
[2026-04-26 01:22:07] 2026-04-25 23:21:19,024 | INFO     | using path: /var/lib/boinc/var/slot180/slots/1/PanDA_Pilot-7098003993/memory_monitor_summary.json (trf name=prmon)
[2026-04-26 01:22:07] 2026-04-25 23:21:19,053 | INFO     | 1221s have passed since pilot start - server update state is 'RUNNING'
[2026-04-26 01:22:07] 2026-04-25 23:21:19,203 | INFO     | number of running child processes to parent process 2473054: 1
[2026-04-26 01:22:07] 2026-04-25 23:21:19,203 | INFO     | maximum number of monitored processes: 6
[2026-04-26 01:22:07] 2026-04-25 23:21:19,282 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-26 01:22:07] 2026-04-25 23:21:21,284 | INFO     | job 7098003993 has state=finished
[2026-04-26 01:22:07] 2026-04-25 23:21:21,285 | INFO     | preparing for final server update for job 7098003993 in state='finished'
[2026-04-26 01:22:07] 2026-04-25 23:21:21,285 | INFO     | reading metadata from: /var/lib/boinc/var/slot180/slots/1/PanDA_Pilot-7098003993/jobReport.json
[2026-04-26 01:22:07] 2026-04-25 23:21:21,286 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot180/slots/1/workernode_map.json
[2026-04-26 01:22:07] 2026-04-25 23:21:21,286 | INFO     | this job has now completed (state=finished)
[2026-04-26 01:22:07] 2026-04-25 23:21:21,286 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-26 01:22:07] 2026-04-25 23:21:21,286 | INFO     | log transfer has been attempted: DONE
[2026-04-26 01:22:07] 2026-04-25 23:21:21,286 | INFO     | job 7098003993 has finished - writing final server update
[2026-04-26 01:22:07] 2026-04-25 23:21:21,287 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1914318/.job.ad'
[2026-04-26 01:22:07] 2026-04-25 23:21:21,287 | INFO     | total number of processed events: 400 (read)
[2026-04-26 01:22:07] 2026-04-25 23:21:21,301 | INFO     | using path: /var/lib/boinc/var/slot180/slots/1/PanDA_Pilot-7098003993/memory_monitor_summary.json (trf name=prmon)
[2026-04-26 01:22:07] 2026-04-25 23:21:21,301 | INFO     | extracted standard info from prmon json
[2026-04-26 01:22:07] 2026-04-25 23:21:21,301 | INFO     | extracted standard memory fields from prmon json
[2026-04-26 01:22:07] 2026-04-25 23:21:21,301 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-26 01:22:07] 2026-04-25 23:21:21,302 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-26 01:22:07] 2026-04-25 23:21:21,302 | INFO     | fitting pss+swap vs Time
[2026-04-26 01:22:07] 2026-04-25 23:21:21,302 | INFO     | sum of square deviations: 677222.0
[2026-04-26 01:22:07] 2026-04-25 23:21:21,302 | INFO     | sum of deviations: -455394707.00000006
[2026-04-26 01:22:07] 2026-04-25 23:21:21,302 | INFO     | mean x (centered): 0.0
[2026-04-26 01:22:07] 2026-04-25 23:21:21,302 | INFO     | mean y: 3060572.5384615385
[2026-04-26 01:22:07] 2026-04-25 23:21:21,302 | INFO     | intersect: 3060572.5384615385
[2026-04-26 01:22:07] 2026-04-25 23:21:21,302 | INFO     | chi2: 0.019456379514212283
[2026-04-26 01:22:07] 2026-04-25 23:21:21,302 | INFO     | current memory leak: -672.45 B/s (using 13 data points, chi2=0.02)
[2026-04-26 01:22:07] 2026-04-25 23:21:21,303 | INFO     | could have reported an average CPU frequency of 3598 MHz (4 samples)
[2026-04-26 01:22:07] 2026-04-25 23:21:21,303 | INFO     | ..............................
[2026-04-26 01:22:07] 2026-04-25 23:21:21,303 | INFO     | . Timing measurements:
[2026-04-26 01:22:07] 2026-04-25 23:21:21,303 | INFO     | . get job = 0 s
[2026-04-26 01:22:07] 2026-04-25 23:21:21,303 | INFO     | . initial setup = 3 s
[2026-04-26 01:22:07] 2026-04-25 23:21:21,303 | INFO     | . payload setup = 3 s
[2026-04-26 01:22:07] 2026-04-25 23:21:21,303 | INFO     | . stage-in = 0 s
[2026-04-26 01:22:07] 2026-04-25 23:21:21,303 | INFO     | . payload execution = 1197 s
[2026-04-26 01:22:07] 2026-04-25 23:21:21,303 | INFO     | . stage-out = 0 s
[2026-04-26 01:22:07] 2026-04-25 23:21:21,303 | INFO     | . log creation = 0 s
[2026-04-26 01:22:07] 2026-04-25 23:21:21,303 | INFO     | ..............................
[2026-04-26 01:22:07] 2026-04-25 23:21:21,675 | INFO     | 
[2026-04-26 01:22:07] 2026-04-25 23:21:21,676 | INFO     | job summary report
[2026-04-26 01:22:07] 2026-04-25 23:21:21,676 | INFO     | --------------------------------------------------
[2026-04-26 01:22:07] 2026-04-25 23:21:21,676 | INFO     | PanDA job id: 7098003993
[2026-04-26 01:22:07] 2026-04-25 23:21:21,676 | INFO     | task id: 49545114
[2026-04-26 01:22:07] 2026-04-25 23:21:21,676 | INFO     | errors: (none)
[2026-04-26 01:22:07] 2026-04-25 23:21:21,676 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-26 01:22:07] 2026-04-25 23:21:21,676 | INFO     | pilot state: finished 
[2026-04-26 01:22:07] 2026-04-25 23:21:21,676 | INFO     | transexitcode: 0
[2026-04-26 01:22:07] 2026-04-25 23:21:21,676 | INFO     | exeerrorcode: 0
[2026-04-26 01:22:07] 2026-04-25 23:21:21,676 | INFO     | exeerrordiag: 
[2026-04-26 01:22:07] 2026-04-25 23:21:21,676 | INFO     | exitcode: 0
[2026-04-26 01:22:07] 2026-04-25 23:21:21,676 | INFO     | exitmsg: OK
[2026-04-26 01:22:07] 2026-04-25 23:21:21,676 | INFO     | cpuconsumptiontime: 12656 s
[2026-04-26 01:22:07] 2026-04-25 23:21:21,676 | INFO     | nevents: 400
[2026-04-26 01:22:07] 2026-04-25 23:21:21,676 | INFO     | neventsw: 0
[2026-04-26 01:22:07] 2026-04-25 23:21:21,676 | INFO     | pid: 2473054
[2026-04-26 01:22:07] 2026-04-25 23:21:21,676 | INFO     | pgrp: 2473054
[2026-04-26 01:22:07] 2026-04-25 23:21:21,676 | INFO     | corecount: 12
[2026-04-26 01:22:07] 2026-04-25 23:21:21,676 | INFO     | event service: False
[2026-04-26 01:22:07] 2026-04-25 23:21:21,676 | INFO     | sizes: {0: 2276465, 11: 2276465, 1204: 2301107, 1205: 2310129, 1207: 2310185, 1209: 2310379}
[2026-04-26 01:22:07] 2026-04-25 23:21:21,676 | INFO     | --------------------------------------------------
[2026-04-26 01:22:07] 2026-04-25 23:21:21,676 | INFO     | 
[2026-04-26 01:22:07] 2026-04-25 23:21:21,676 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot180/slots/1
[2026-04-26 01:22:07] 2026-04-25 23:21:21,691 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-26 01:22:07] 2026-04-25 23:21:21,692 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-26 01:22:07] 2026-04-25 23:21:21,692 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-26 01:22:07] 2026-04-25 23:21:21,692 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-26 01:22:07] 2026-04-25 23:21:21,692 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-26 01:22:07] 2026-04-25 23:21:21,692 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-26 01:22:07] 2026-04-25 23:21:21,692 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-26 01:22:07] 2026-04-25 23:21:21,692 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-26 01:22:07] 2026-04-25 23:21:21,692 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-26 01:22:07] 2026-04-25 23:21:21,692 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-26 01:22:07] 2026-04-25 23:21:21,692 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-26 01:22:07] 2026-04-25 23:21:21,692 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-26 01:22:07] 2026-04-25 23:21:21,692 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-26 01:22:07] 2026-04-25 23:21:21,692 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-26 01:22:07] 2026-04-25 23:21:21,692 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-26 01:22:07] 2026-04-25 23:21:21,692 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-26 01:22:07] 2026-04-25 23:21:21,692 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-26 01:22:07] 2026-04-25 23:21:21,692 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-26 01:22:07] 2026-04-25 23:21:21,692 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-26 01:22:07] 2026-04-25 23:21:21,692 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-26 01:22:07] 2026-04-25 23:21:21,692 | INFO     | job 7098003993 has completed (purged errors)
[2026-04-26 01:22:07] 2026-04-25 23:21:21,692 | INFO     | overall cleanup function is called
[2026-04-26 01:22:07] 2026-04-25 23:21:22,696 | INFO     | --- collectZombieJob: --- 10, [2473054]
[2026-04-26 01:22:07] 2026-04-25 23:21:22,696 | INFO     | zombie collector waiting for pid 2473054
[2026-04-26 01:22:07] 2026-04-25 23:21:22,697 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-26 01:22:07] 2026-04-25 23:21:22,697 | INFO     | collected zombie processes
[2026-04-26 01:22:07] 2026-04-25 23:21:22,697 | INFO     | will attempt to kill all subprocesses of pid=2473054
[2026-04-26 01:22:07] 2026-04-25 23:21:22,880 | INFO     | process IDs to be killed: [2473054] (in reverse order)
[2026-04-26 01:22:07] 2026-04-25 23:21:22,965 | WARNING  | found no corresponding commands to process id(s)
[2026-04-26 01:22:07] 2026-04-25 23:21:22,965 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-26 01:22:07] 2026-04-25 23:21:22,981 | INFO     | did not find any defunct processes belonging to 2473054
[2026-04-26 01:22:07] 2026-04-25 23:21:22,994 | INFO     | did not find any defunct processes belonging to 2473054
[2026-04-26 01:22:07] 2026-04-25 23:21:22,994 | INFO     | Ready for new job
[2026-04-26 01:22:07] 2026-04-25 23:21:22,995 | INFO     | **************************************
[2026-04-26 01:22:07] 2026-04-25 23:21:22,995 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-26 01:22:07] 2026-04-25 23:21:22,995 | INFO     | **************************************
[2026-04-26 01:22:07] 2026-04-25 23:21:22,995 | INFO     | 
[2026-04-26 01:22:07] 2026-04-25 23:21:22,998 | INFO     | architecture information:
[2026-04-26 01:22:07] 2026-04-25 23:21:22,998 | INFO     | executing command: cat /etc/os-release
[2026-04-26 01:22:07] 2026-04-25 23:21:23,004 | INFO     | cat /etc/os-release:
[2026-04-26 01:22:07] NAME="CentOS Linux"
[2026-04-26 01:22:07] VERSION="7 (Core)"
[2026-04-26 01:22:07] ID="centos"
[2026-04-26 01:22:07] ID_LIKE="rhel fedora"
[2026-04-26 01:22:07] VERSION_ID="7"
[2026-04-26 01:22:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-26 01:22:07] ANSI_COLOR="0;31"
[2026-04-26 01:22:07] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-26 01:22:07] HOME_URL="https://www.centos.org/"
[2026-04-26 01:22:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-26 01:22:07] 
[2026-04-26 01:22:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-26 01:22:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-26 01:22:07] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-26 01:22:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-26 01:22:07] 
[2026-04-26 01:22:07] 2026-04-25 23:21:23,004 | INFO     | **************************************
[2026-04-26 01:22:07] 2026-04-25 23:21:23,507 | INFO     | executing command: df -mP /var/lib/boinc/var/slot180/slots/1
[2026-04-26 01:22:07] 2026-04-25 23:21:23,521 | INFO     | sufficient remaining disk space (305486888960 B)
[2026-04-26 01:22:07] 2026-04-25 23:21:23,522 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-26 01:22:07] 2026-04-25 23:21:23,522 | INFO     | current server update state: UPDATING_FINAL
[2026-04-26 01:22:07] 2026-04-25 23:21:23,522 | INFO     | update_server=False
[2026-04-26 01:22:07] 2026-04-25 23:21:23,522 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-26 01:22:07] 2026-04-25 23:21:23,522 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-26 01:22:07] 2026-04-25 23:21:23,522 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-26 01:22:07] 2026-04-25 23:21:23,522 | INFO     | aborting loop
[2026-04-26 01:22:07] 2026-04-25 23:21:23,733 | INFO     | all data control threads have been joined
[2026-04-26 01:22:07] 2026-04-25 23:21:23,898 | INFO     | all payload control threads have been joined
[2026-04-26 01:22:07] 2026-04-25 23:21:24,527 | INFO     | [job] retrieve thread has finished
[2026-04-26 01:22:07] 2026-04-25 23:21:24,528 | INFO     | [job] job monitor thread has finished
[2026-04-26 01:22:07] 2026-04-25 23:21:24,722 | INFO     | [payload] execute_payloads thread has finished
[2026-04-26 01:22:07] 2026-04-25 23:21:24,739 | INFO     | [data] control thread has finished
[2026-04-26 01:22:07] 2026-04-25 23:21:24,904 | INFO     | [payload] control thread has finished
[2026-04-26 01:22:07] 2026-04-25 23:21:24,938 | INFO     | all job control threads have been joined
[2026-04-26 01:22:07] 2026-04-25 23:21:25,139 | INFO     | [payload] failed_post thread has finished
[2026-04-26 01:22:07] 2026-04-25 23:21:25,326 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-26 01:22:07] 2026-04-25 23:21:25,527 | INFO     | [data] copytool_out thread has finished
[2026-04-26 01:22:07] 2026-04-25 23:21:25,694 | INFO     | [job] validate thread has finished
[2026-04-26 01:22:07] 2026-04-25 23:21:25,751 | INFO     | [payload] validate_post thread has finished
[2026-04-26 01:22:07] 2026-04-25 23:21:25,795 | INFO     | [job] create_data_payload thread has finished
[2026-04-26 01:22:07] 2026-04-25 23:21:25,829 | INFO     | [payload] validate_pre thread has finished
[2026-04-26 01:22:07] 2026-04-25 23:21:25,944 | INFO     | [job] control thread has finished
[2026-04-26 01:22:07] 2026-04-25 23:21:25,949 | INFO     | [data] copytool_in thread has finished
[2026-04-26 01:22:07] 2026-04-25 23:21:26,348 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-26 01:22:07] 2026-04-25 23:21:27,353 | INFO     | [job] queue monitor thread has finished
[2026-04-26 01:22:07] 2026-04-25 23:21:29,332 | INFO     | [data] queue_monitor thread has finished
[2026-04-26 01:22:07] 2026-04-25 23:21:34,550 | INFO     | job.realtimelogging is not enabled
[2026-04-26 01:22:07] 2026-04-25 23:21:35,556 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-26 01:22:07] 2026-04-25 23:21:54,396 | INFO     | PID=2466597 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-26 01:22:07] 2026-04-25 23:21:54,396 | INFO     | found 0 job(s) in 20 queues
[2026-04-26 01:22:07] 2026-04-25 23:21:54,396 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-26 01:22:07] 2026-04-25 23:21:54,396 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-26 01:22:07] 2026-04-25 23:22:02,684 | INFO     | [monitor] cgroup control has ended
[2026-04-26 01:22:07] 2026-04-25 23:22:02,749 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22406336546624)>', '<ExcThread(monitor, started 22406028568320)>']
[2026-04-26 01:22:07] 2026-04-25 23:22:03,442 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-26 01:22:07] 2026-04-25 23:22:03,442 | INFO     | [monitor] control thread has ended
[2026-04-26 01:22:07] 2026-04-25 23:22:07,774 | INFO     | all workflow threads have been joined
[2026-04-26 01:22:07] 2026-04-25 23:22:07,775 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-26 01:22:07] 2026-04-25 23:22:07,775 | INFO     | traces error code: 0
[2026-04-26 01:22:07] 2026-04-25 23:22:07,775 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-26 01:22:07] 2026-04-25 23:22:07,872 [wrapper] ==== pilot stdout END ====
[2026-04-26 01:22:07] 2026-04-25 23:22:07,875 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-26 01:22:07] 2026-04-25 23:22:07,876 [wrapper] pilotpid: 2466597
[2026-04-26 01:22:07] 2026-04-25 23:22:07,877 [wrapper] Pilot exit status: 0
[2026-04-26 01:22:07] 2026-04-25 23:22:07,882 [wrapper] pandaids: 7098003993
[2026-04-26 01:22:07] 2026-04-25 23:22:07,943 [wrapper] cleanup supervisor_pilot 2499222 2466598
[2026-04-26 01:22:07] 2026-04-25 23:22:07,944 [wrapper] Test setup, not cleaning
[2026-04-26 01:22:07] 2026-04-25 23:22:07,945 [wrapper] apfmon messages muted
[2026-04-26 01:22:07] 2026-04-25 23:22:07,946 [wrapper] ==== wrapper stdout END ====
[2026-04-26 01:22:07] 2026-04-25 23:22:07,948 [wrapper] ==== wrapper stderr END ====
[2026-04-26 01:22:07]  *** Error codes and diagnostics ***
[2026-04-26 01:22:07]     "exeErrorCode": 0,
[2026-04-26 01:22:07]     "pilotErrorCode": 0,
[2026-04-26 01:22:07]  *** Listing of results directory ***
[2026-04-26 01:22:07] total 461568
[2026-04-26 01:22:07] -rw-r--r--. 1 boinc boinc    644190 Apr 18 11:00 pilot3.tar.gz
[2026-04-26 01:22:07] -rwx------. 1 boinc boinc     36322 Apr 18 11:24 runpilot2-wrapper.sh
[2026-04-26 01:22:07] -rw-r--r--. 1 boinc boinc      5094 Apr 18 11:42 queuedata.json
[2026-04-26 01:22:07] -rw-r--r--. 1 boinc boinc       100 Apr 26 01:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-26 01:22:07] -rwxr-xr-x. 1 boinc boinc      7986 Apr 26 01:00 run_atlas
[2026-04-26 01:22:07] -rw-r--r--. 1 boinc boinc       105 Apr 26 01:00 job.xml
[2026-04-26 01:22:07] -rw-r--r--. 2 boinc boinc     15665 Apr 26 01:00 start_atlas.sh
[2026-04-26 01:22:07] drwxrwx--x. 2 boinc boinc      4096 Apr 26 01:00 shared
[2026-04-26 01:22:07] -rw-r--r--. 2 boinc boinc    656946 Apr 26 01:00 input.tar.gz
[2026-04-26 01:22:07] -rw-r--r--. 1 boinc boinc      6630 Apr 26 01:00 init_data.xml
[2026-04-26 01:22:07] -rw-r--r--. 2 boinc boinc 277237945 Apr 26 01:00 EVNT.49539591._000510.pool.root.1
[2026-04-26 01:22:07] -rw-r--r--. 1 boinc boinc         0 Apr 26 01:00 boinc_lockfile
[2026-04-26 01:22:07] -rw-r--r--. 1 boinc boinc      2606 Apr 26 01:00 pandaJob.out
[2026-04-26 01:22:07] -rw-------. 1 boinc boinc    997533 Apr 26 01:00 agis_schedconf.cvmfs.json
[2026-04-26 01:22:07] -rw-------. 1 boinc boinc   1509089 Apr 26 01:00 agis_ddmendpoints.agis.ALL.json
[2026-04-26 01:22:07] -rw-------. 1 boinc boinc       445 Apr 26 01:01 workernode_map.json
[2026-04-26 01:22:07] drwx------. 5 boinc boinc      4096 Apr 26 01:01 pilot3
[2026-04-26 01:22:07] -rw-------. 1 boinc boinc 190340684 Apr 26 01:20 HITS.49545114._030506.pool.root.1
[2026-04-26 01:22:07] -rw-r--r--. 1 boinc boinc       487 Apr 26 01:20 boinc_task_state.xml
[2026-04-26 01:22:07] -rw-------. 1 boinc boinc      1027 Apr 26 01:21 memory_monitor_summary.json
[2026-04-26 01:22:07] -rw-------. 1 boinc boinc        95 Apr 26 01:21 pilot_heartbeat.json
[2026-04-26 01:22:07] -rw-------. 1 boinc boinc    341822 Apr 26 01:21 log.49545114._030506.job.log.tgz.1
[2026-04-26 01:22:07] -rw-------. 1 boinc boinc      6381 Apr 26 01:21 heartbeat_new.json
[2026-04-26 01:22:07] -rw-------. 1 boinc boinc      6272 Apr 26 01:21 heartbeat.json
[2026-04-26 01:22:07] -rw-r--r--. 1 boinc boinc        27 Apr 26 01:22 wrapper_checkpoint.txt
[2026-04-26 01:22:07] -rw-------. 1 boinc boinc      4826 Apr 26 01:22 pilotlog.txt
[2026-04-26 01:22:07] -rw-r--r--. 1 boinc boinc      8192 Apr 26 01:22 boinc_mmap_file
[2026-04-26 01:22:07] -rw-------. 1 boinc boinc    161646 Apr 26 01:22 log.49545114._030506.job.log.1
[2026-04-26 01:22:07] -rw-------. 1 boinc boinc       357 Apr 26 01:22 output.list
[2026-04-26 01:22:07] -rw-r--r--. 1 boinc boinc       410 Apr 26 01:22 runtime_log
[2026-04-26 01:22:07] -rw-------. 1 boinc boinc    522240 Apr 26 01:22 result.tar.gz
[2026-04-26 01:22:07] -rw-r--r--. 1 boinc boinc      8845 Apr 26 01:22 runtime_log.err
[2026-04-26 01:22:07] -rw-------. 1 boinc boinc       658 Apr 26 01:22 4ddce3052097.diag
[2026-04-26 01:22:07] -rw-r--r--. 1 boinc boinc     21075 Apr 26 01:22 stderr.txt
[2026-04-26 01:22:07] HITS file was successfully produced:
[2026-04-26 01:22:07] -rw-------. 1 boinc boinc 190340684 Apr 26 01:20 shared/HITS.pool.root.1
[2026-04-26 01:22:07]  *** Contents of shared directory: ***
[2026-04-26 01:22:07] total 457804
[2026-04-26 01:22:07] -rw-r--r--. 2 boinc boinc     15665 Apr 26 01:00 start_atlas.sh
[2026-04-26 01:22:07] -rw-r--r--. 2 boinc boinc    656946 Apr 26 01:00 input.tar.gz
[2026-04-26 01:22:07] -rw-r--r--. 2 boinc boinc 277237945 Apr 26 01:00 ATLAS.root_0
[2026-04-26 01:22:07] -rw-------. 1 boinc boinc 190340684 Apr 26 01:20 HITS.pool.root.1
[2026-04-26 01:22:07] -rw-------. 1 boinc boinc    522240 Apr 26 01:22 result.tar.gz
01:22:09 (2461804): run_atlas exited; CPU time 12667.479608
01:22:09 (2461804): called boinc_finish(0)

</stderr_txt>
]]>

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