Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:40:44 (1008948): wrapper (7.7.26015): starting
10:40:44 (1008948): wrapper: running run_atlas (--nthreads 4)
[2026-04-26 10:40:44] Arguments: --nthreads 4
[2026-04-26 10:40:44] Threads: 4
[2026-04-26 10:40:44] Checking for CVMFS
[2026-04-26 10:40:44] No cvmfs_config command found, will try listing directly
[2026-04-26 10:40:44] CVMFS is ok
[2026-04-26 10:40:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-26 10:40:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-26 10:40:44] Further information can be found at the LHC@home message board.
[2026-04-26 10:40:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-26 10:40:44] Checking for apptainer binary...
[2026-04-26 10:40:44] which: no apptainer in ((null))
[2026-04-26 10:40:44] apptainer is not installed, using version from CVMFS
[2026-04-26 10:40:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-26 10:40:44] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot112/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2026-04-26 10:40:44] apptainer works
[2026-04-26 10:40:44] Set ATHENA_PROC_NUMBER=4
[2026-04-26 10:40:44] Set ATHENA_CORE_NUMBER=4
[2026-04-26 10:40:44] Starting ATLAS job with PandaID=7114612643
[2026-04-26 10:40:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot112/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-26 13:04:18]  *** The last 200 lines of the pilot log: ***
[2026-04-26 13:04:18] 2026-04-26 11:03:15,485 | INFO     | job 7114612643 has finished - writing final server update
[2026-04-26 13:04:18] 2026-04-26 11:03:15,486 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_354468/.job.ad'
[2026-04-26 13:04:18] 2026-04-26 11:03:15,486 | INFO     | total number of processed events: 400 (read)
[2026-04-26 13:04:18] 2026-04-26 11:03:15,508 | INFO     | using path: /var/lib/boinc/var/slot112/slots/1/PanDA_Pilot-7114612643/memory_monitor_summary.json (trf name=prmon)
[2026-04-26 13:04:18] 2026-04-26 11:03:15,509 | INFO     | extracted standard info from prmon json
[2026-04-26 13:04:18] 2026-04-26 11:03:15,509 | INFO     | extracted standard memory fields from prmon json
[2026-04-26 13:04:18] 2026-04-26 11:03:15,509 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-26 13:04:18] 2026-04-26 11:03:15,509 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-26 13:04:18] 2026-04-26 11:03:15,512 | INFO     | fitting pss+swap vs Time
[2026-04-26 13:04:18] 2026-04-26 11:03:15,512 | INFO     | sum of square deviations: 850825255.0
[2026-04-26 13:04:18] 2026-04-26 11:03:15,513 | INFO     | sum of deviations: -8280094799.000002
[2026-04-26 13:04:18] 2026-04-26 11:03:15,513 | INFO     | mean x (centered): 0.0
[2026-04-26 13:04:18] 2026-04-26 11:03:15,513 | INFO     | mean y: 2347651.9142857143
[2026-04-26 13:04:18] 2026-04-26 11:03:15,513 | INFO     | intersect: 2347651.9142857143
[2026-04-26 13:04:18] 2026-04-26 11:03:15,513 | INFO     | chi2: 1.9837452281758554
[2026-04-26 13:04:18] 2026-04-26 11:03:15,513 | INFO     | sum of square deviations: 762879420.0
[2026-04-26 13:04:18] 2026-04-26 11:03:15,514 | INFO     | sum of deviations: 1149351995.999999
[2026-04-26 13:04:18] 2026-04-26 11:03:15,514 | INFO     | mean x (centered): 0.0
[2026-04-26 13:04:18] 2026-04-26 11:03:15,514 | INFO     | mean y: 2363543.3185185185
[2026-04-26 13:04:18] 2026-04-26 11:03:15,514 | INFO     | intersect: 2363543.3185185185
[2026-04-26 13:04:18] 2026-04-26 11:03:15,515 | INFO     | chi2: 1.1183705609416408
[2026-04-26 13:04:18] 2026-04-26 11:03:15,515 | INFO     | current chi2=1.1183705609416408 (change=43.6232765651044 %)
[2026-04-26 13:04:18] 2026-04-26 11:03:15,515 | INFO     | sum of square deviations: 681212772.5
[2026-04-26 13:04:18] 2026-04-26 11:03:15,516 | INFO     | sum of deviations: 1241504970.500002
[2026-04-26 13:04:18] 2026-04-26 11:03:15,516 | INFO     | mean x (centered): 0.0
[2026-04-26 13:04:18] 2026-04-26 11:03:15,516 | INFO     | mean y: 2363715.730769231
[2026-04-26 13:04:18] 2026-04-26 11:03:15,516 | INFO     | intersect: 2363715.730769231
[2026-04-26 13:04:18] 2026-04-26 11:03:15,516 | INFO     | chi2: 1.1190286186758176
[2026-04-26 13:04:18] 2026-04-26 11:03:15,516 | INFO     | current chi2=1.1190286186758176 (change=-0.05884075968726783 %)
[2026-04-26 13:04:18] 2026-04-26 11:03:15,516 | INFO     | right removable region: 129
[2026-04-26 13:04:18] 2026-04-26 11:03:15,517 | INFO     | sum of square deviations: 762879420.0
[2026-04-26 13:04:18] 2026-04-26 11:03:15,517 | INFO     | sum of deviations: -20040177012.0
[2026-04-26 13:04:18] 2026-04-26 11:03:15,517 | INFO     | mean x (centered): 0.0
[2026-04-26 13:04:18] 2026-04-26 11:03:15,517 | INFO     | mean y: 2367467.2592592593
[2026-04-26 13:04:18] 2026-04-26 11:03:15,518 | INFO     | intersect: 2367467.2592592593
[2026-04-26 13:04:18] 2026-04-26 11:03:15,518 | INFO     | chi2: 0.9207211930396462
[2026-04-26 13:04:18] 2026-04-26 11:03:15,518 | INFO     | current chi2=0.9207211930396462 (change=53.586721724024436 %)
[2026-04-26 13:04:18] 2026-04-26 11:03:15,518 | INFO     | sum of square deviations: 681212772.5
[2026-04-26 13:04:18] 2026-04-26 11:03:15,519 | INFO     | sum of deviations: -17771892774.5
[2026-04-26 13:04:18] 2026-04-26 11:03:15,519 | INFO     | mean x (centered): 0.0
[2026-04-26 13:04:18] 2026-04-26 11:03:15,519 | INFO     | mean y: 2363244.7
[2026-04-26 13:04:18] 2026-04-26 11:03:15,519 | INFO     | intersect: 2363244.7
[2026-04-26 13:04:18] 2026-04-26 11:03:15,519 | INFO     | chi2: 0.9198595323256848
[2026-04-26 13:04:18] 2026-04-26 11:03:15,519 | INFO     | current chi2=0.9198595323256848 (change=0.09358541114022317 %)
[2026-04-26 13:04:18] 2026-04-26 11:03:15,519 | INFO     | left removable region: 10
[2026-04-26 13:04:18] 2026-04-26 11:03:15,520 | INFO     | sum of square deviations: 522502820.0
[2026-04-26 13:04:18] 2026-04-26 11:03:15,520 | INFO     | sum of deviations: -8182298501.0
[2026-04-26 13:04:18] 2026-04-26 11:03:15,520 | INFO     | mean x (centered): 0.0
[2026-04-26 13:04:18] 2026-04-26 11:03:15,520 | INFO     | mean y: 2382145.56302521
[2026-04-26 13:04:18] 2026-04-26 11:03:15,520 | INFO     | intersect: 2382145.56302521
[2026-04-26 13:04:18] 2026-04-26 11:03:15,521 | INFO     | chi2: 0.023461769096865176
[2026-04-26 13:04:18] 2026-04-26 11:03:15,521 | INFO     | current memory leak: -15.66 B/s (using 119 data points, chi2=0.02)
[2026-04-26 13:04:18] 2026-04-26 11:03:15,521 | INFO     | could have reported an average CPU frequency of 2757 MHz (8 samples)
[2026-04-26 13:04:18] 2026-04-26 11:03:15,521 | INFO     | ..............................
[2026-04-26 13:04:18] 2026-04-26 11:03:15,521 | INFO     | . Timing measurements:
[2026-04-26 13:04:18] 2026-04-26 11:03:15,521 | INFO     | . get job = 0 s
[2026-04-26 13:04:18] 2026-04-26 11:03:15,522 | INFO     | . initial setup = 5 s
[2026-04-26 13:04:18] 2026-04-26 11:03:15,522 | INFO     | . payload setup = 10 s
[2026-04-26 13:04:18] 2026-04-26 11:03:15,522 | INFO     | . stage-in = 0 s
[2026-04-26 13:04:18] 2026-04-26 11:03:15,522 | INFO     | . payload execution = 8506 s
[2026-04-26 13:04:18] 2026-04-26 11:03:15,522 | INFO     | . stage-out = 0 s
[2026-04-26 13:04:18] 2026-04-26 11:03:15,522 | INFO     | . log creation = 0 s
[2026-04-26 13:04:18] 2026-04-26 11:03:15,522 | INFO     | ..............................
[2026-04-26 13:04:18] 2026-04-26 11:03:15,606 | INFO     | 
[2026-04-26 13:04:18] 2026-04-26 11:03:15,606 | INFO     | job summary report
[2026-04-26 13:04:18] 2026-04-26 11:03:15,606 | INFO     | --------------------------------------------------
[2026-04-26 13:04:18] 2026-04-26 11:03:15,606 | INFO     | PanDA job id: 7114612643
[2026-04-26 13:04:18] 2026-04-26 11:03:15,606 | INFO     | task id: 49863714
[2026-04-26 13:04:18] 2026-04-26 11:03:15,606 | INFO     | errors: (none)
[2026-04-26 13:04:18] 2026-04-26 11:03:15,606 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-26 13:04:18] 2026-04-26 11:03:15,607 | INFO     | pilot state: finished 
[2026-04-26 13:04:18] 2026-04-26 11:03:15,607 | INFO     | transexitcode: 0
[2026-04-26 13:04:18] 2026-04-26 11:03:15,607 | INFO     | exeerrorcode: 0
[2026-04-26 13:04:18] 2026-04-26 11:03:15,607 | INFO     | exeerrordiag: 
[2026-04-26 13:04:18] 2026-04-26 11:03:15,607 | INFO     | exitcode: 0
[2026-04-26 13:04:18] 2026-04-26 11:03:15,607 | INFO     | exitmsg: OK
[2026-04-26 13:04:18] 2026-04-26 11:03:15,607 | INFO     | cpuconsumptiontime: 32856 s
[2026-04-26 13:04:18] 2026-04-26 11:03:15,607 | INFO     | nevents: 400
[2026-04-26 13:04:18] 2026-04-26 11:03:15,607 | INFO     | neventsw: 0
[2026-04-26 13:04:18] 2026-04-26 11:03:15,607 | INFO     | pid: 1018536
[2026-04-26 13:04:18] 2026-04-26 11:03:15,607 | INFO     | pgrp: 1018536
[2026-04-26 13:04:18] 2026-04-26 11:03:15,607 | INFO     | corecount: 4
[2026-04-26 13:04:18] 2026-04-26 11:03:15,607 | INFO     | event service: False
[2026-04-26 13:04:18] 2026-04-26 11:03:15,607 | INFO     | sizes: {0: 2274002, 1: 2276500, 12: 2276500, 8520: 2313363, 8523: 2313501}
[2026-04-26 13:04:18] 2026-04-26 11:03:15,608 | INFO     | --------------------------------------------------
[2026-04-26 13:04:18] 2026-04-26 11:03:15,608 | INFO     | 
[2026-04-26 13:04:18] 2026-04-26 11:03:15,608 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot112/slots/1
[2026-04-26 13:04:18] 2026-04-26 11:03:15,633 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-26 13:04:18] 2026-04-26 11:03:15,634 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-26 13:04:18] 2026-04-26 11:03:15,634 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-26 13:04:18] 2026-04-26 11:03:15,634 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-26 13:04:18] 2026-04-26 11:03:15,634 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-26 13:04:18] 2026-04-26 11:03:15,634 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-26 13:04:18] 2026-04-26 11:03:15,634 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-26 13:04:18] 2026-04-26 11:03:15,634 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-26 13:04:18] 2026-04-26 11:03:15,634 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-26 13:04:18] 2026-04-26 11:03:15,634 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-26 13:04:18] 2026-04-26 11:03:15,634 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-26 13:04:18] 2026-04-26 11:03:15,635 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-26 13:04:18] 2026-04-26 11:03:15,635 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-26 13:04:18] 2026-04-26 11:03:15,635 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-26 13:04:18] 2026-04-26 11:03:15,635 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-26 13:04:18] 2026-04-26 11:03:15,635 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-26 13:04:18] 2026-04-26 11:03:15,635 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-26 13:04:18] 2026-04-26 11:03:15,635 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-26 13:04:18] 2026-04-26 11:03:15,635 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-26 13:04:18] 2026-04-26 11:03:15,635 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-26 13:04:18] 2026-04-26 11:03:15,635 | INFO     | job 7114612643 has completed (purged errors)
[2026-04-26 13:04:18] 2026-04-26 11:03:15,636 | INFO     | overall cleanup function is called
[2026-04-26 13:04:18] 2026-04-26 11:03:16,491 | INFO     | PID=1013340 has CPU usage=10.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-26 13:04:18] 2026-04-26 11:03:16,491 | INFO     | .. there are 10 such processes running
[2026-04-26 13:04:18] 2026-04-26 11:03:16,645 | INFO     | --- collectZombieJob: --- 10, [1018536]
[2026-04-26 13:04:18] 2026-04-26 11:03:16,645 | INFO     | zombie collector waiting for pid 1018536
[2026-04-26 13:04:18] 2026-04-26 11:03:16,645 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-26 13:04:18] 2026-04-26 11:03:16,645 | INFO     | collected zombie processes
[2026-04-26 13:04:18] 2026-04-26 11:03:16,646 | INFO     | will attempt to kill all subprocesses of pid=1018536
[2026-04-26 13:04:18] 2026-04-26 11:03:17,152 | INFO     | process IDs to be killed: [1018536] (in reverse order)
[2026-04-26 13:04:18] 2026-04-26 11:03:17,317 | WARNING  | found no corresponding commands to process id(s)
[2026-04-26 13:04:18] 2026-04-26 11:03:17,317 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-26 13:04:18] 2026-04-26 11:03:17,334 | INFO     | did not find any defunct processes belonging to 1018536
[2026-04-26 13:04:18] 2026-04-26 11:03:17,348 | INFO     | did not find any defunct processes belonging to 1018536
[2026-04-26 13:04:18] 2026-04-26 11:03:17,348 | INFO     | Ready for new job
[2026-04-26 13:04:18] 2026-04-26 11:03:17,350 | INFO     | ***************************************
[2026-04-26 13:04:18] 2026-04-26 11:03:17,350 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-26 13:04:18] 2026-04-26 11:03:17,350 | INFO     | ***************************************
[2026-04-26 13:04:18] 2026-04-26 11:03:17,350 | INFO     | 
[2026-04-26 13:04:18] 2026-04-26 11:03:17,356 | INFO     | architecture information:
[2026-04-26 13:04:18] 2026-04-26 11:03:17,356 | INFO     | executing command: cat /etc/os-release
[2026-04-26 13:04:18] 2026-04-26 11:03:17,372 | INFO     | cat /etc/os-release:
[2026-04-26 13:04:18] NAME="CentOS Linux"
[2026-04-26 13:04:18] VERSION="7 (Core)"
[2026-04-26 13:04:18] ID="centos"
[2026-04-26 13:04:18] ID_LIKE="rhel fedora"
[2026-04-26 13:04:18] VERSION_ID="7"
[2026-04-26 13:04:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-26 13:04:18] ANSI_COLOR="0;31"
[2026-04-26 13:04:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-26 13:04:18] HOME_URL="https://www.centos.org/"
[2026-04-26 13:04:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-26 13:04:18] 
[2026-04-26 13:04:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-26 13:04:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-26 13:04:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-26 13:04:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-26 13:04:18] 
[2026-04-26 13:04:18] 2026-04-26 11:03:17,372 | INFO     | ***************************************
[2026-04-26 13:04:18] 2026-04-26 11:03:17,875 | INFO     | executing command: df -mP /var/lib/boinc/var/slot112/slots/1
[2026-04-26 13:04:18] 2026-04-26 11:03:17,891 | INFO     | sufficient remaining disk space (228543430656 B)
[2026-04-26 13:04:18] 2026-04-26 11:03:17,891 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-26 13:04:18] 2026-04-26 11:03:17,891 | INFO     | current server update state: UPDATING_FINAL
[2026-04-26 13:04:18] 2026-04-26 11:03:17,891 | INFO     | update_server=False
[2026-04-26 13:04:18] 2026-04-26 11:03:17,891 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-26 13:04:18] 2026-04-26 11:03:18,283 | INFO     | all data control threads have been joined
[2026-04-26 13:04:18] 2026-04-26 11:03:18,495 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-26 13:04:18] 2026-04-26 11:03:18,495 | INFO     | aborting loop
[2026-04-26 13:04:18] 2026-04-26 11:03:18,667 | INFO     | all payload control threads have been joined
[2026-04-26 13:04:18] 2026-04-26 11:03:18,879 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-26 13:04:18] 2026-04-26 11:03:18,892 | INFO     | [job] retrieve thread has finished
[2026-04-26 13:04:18] 2026-04-26 11:03:18,992 | INFO     | all job control threads have been joined
[2026-04-26 13:04:18] 2026-04-26 11:03:19,224 | INFO     | [payload] validate_pre thread has finished
[2026-04-26 13:04:18] 2026-04-26 11:03:19,239 | INFO     | [job] create_data_payload thread has finished
[2026-04-26 13:04:18] 2026-04-26 11:03:19,288 | INFO     | [data] control thread has finished
[2026-04-26 13:04:18] 2026-04-26 11:03:19,462 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-26 13:04:18] 2026-04-26 11:03:19,498 | INFO     | [job] job monitor thread has finished
[2026-04-26 13:04:18] 2026-04-26 11:03:19,528 | INFO     | [data] copytool_in thread has finished
[2026-04-26 13:04:18] 2026-04-26 11:03:19,672 | INFO     | [payload] control thread has finished
[2026-04-26 13:04:18] 2026-04-26 11:03:19,675 | INFO     | [payload] execute_payloads thread has finished
[2026-04-26 13:04:18] 2026-04-26 11:03:19,998 | INFO     | [job] control thread has finished
[2026-04-26 13:04:18] 2026-04-26 11:03:20,168 | INFO     | [payload] validate_post thread has finished
[2026-04-26 13:04:18] 2026-04-26 11:03:20,372 | INFO     | [job] validate thread has finished
[2026-04-26 13:04:18] 2026-04-26 11:03:20,430 | INFO     | [payload] failed_post thread has finished
[2026-04-26 13:04:18] 2026-04-26 11:03:20,617 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-26 13:04:18] 2026-04-26 11:03:20,881 | INFO     | [data] copytool_out thread has finished
[2026-04-26 13:04:18] 2026-04-26 11:03:21,622 | INFO     | [job] queue monitor thread has finished
[2026-04-26 13:04:18] 2026-04-26 11:03:23,469 | INFO     | [data] queue_monitor thread has finished
[2026-04-26 13:04:18] 2026-04-26 11:03:28,013 | INFO     | job.realtimelogging is not enabled
[2026-04-26 13:04:18] 2026-04-26 11:03:29,018 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-26 13:04:18] 2026-04-26 11:03:49,284 | INFO     | PID=1013340 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-26 13:04:18] 2026-04-26 11:03:49,284 | INFO     | .. there are 10 such processes running
[2026-04-26 13:04:18] 2026-04-26 11:03:49,284 | INFO     | found 0 job(s) in 20 queues
[2026-04-26 13:04:18] 2026-04-26 11:03:49,284 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-26 13:04:18] 2026-04-26 11:03:49,284 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-26 13:04:18] 2026-04-26 11:04:12,556 | INFO     | [monitor] cgroup control has ended
[2026-04-26 13:04:18] 2026-04-26 11:04:13,561 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22550680602432)>', '<ExcThread(monitor, started 22550356621056)>']
[2026-04-26 13:04:18] 2026-04-26 11:04:14,400 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-26 13:04:18] 2026-04-26 11:04:14,400 | INFO     | [monitor] control thread has ended
[2026-04-26 13:04:18] 2026-04-26 11:04:18,586 | INFO     | all workflow threads have been joined
[2026-04-26 13:04:18] 2026-04-26 11:04:18,586 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-26 13:04:18] 2026-04-26 11:04:18,586 | INFO     | traces error code: 0
[2026-04-26 13:04:18] 2026-04-26 11:04:18,586 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-26 13:04:18] 2026-04-26 11:04:18,729 [wrapper] ==== pilot stdout END ====
[2026-04-26 13:04:18] 2026-04-26 11:04:18,733 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-26 13:04:18] 2026-04-26 11:04:18,736 [wrapper] pilotpid: 1013340
[2026-04-26 13:04:18] 2026-04-26 11:04:18,738 [wrapper] Pilot exit status: 0
[2026-04-26 13:04:18] 2026-04-26 11:04:18,749 [wrapper] pandaids: 7114612643
[2026-04-26 13:04:18] 2026-04-26 11:04:18,862 [wrapper] cleanup supervisor_pilot 1425733 1013341
[2026-04-26 13:04:18] 2026-04-26 11:04:18,865 [wrapper] Test setup, not cleaning
[2026-04-26 13:04:18] 2026-04-26 11:04:18,868 [wrapper] apfmon messages muted
[2026-04-26 13:04:18] 2026-04-26 11:04:18,870 [wrapper] ==== wrapper stdout END ====
[2026-04-26 13:04:18] 2026-04-26 11:04:18,873 [wrapper] ==== wrapper stderr END ====
[2026-04-26 13:04:18]  *** Error codes and diagnostics ***
[2026-04-26 13:04:18]     "exeErrorCode": 0,
[2026-04-26 13:04:18]     "pilotErrorCode": 0,
[2026-04-26 13:04:18]  *** Listing of results directory ***
[2026-04-26 13:04:18] total 464140
[2026-04-26 13:04:18] -rw-r--r--. 1 boinc boinc    683926 Apr 25 13:58 pilot3.tar.gz
[2026-04-26 13:04:18] -rwx------. 1 boinc boinc     36322 Apr 25 14:14 runpilot2-wrapper.sh
[2026-04-26 13:04:18] -rw-r--r--. 1 boinc boinc      5631 Apr 25 14:18 queuedata.json
[2026-04-26 13:04:18] -rw-r--r--. 1 boinc boinc       100 Apr 26 10:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-26 13:04:18] -rwxr-xr-x. 1 boinc boinc      7986 Apr 26 10:40 run_atlas
[2026-04-26 13:04:18] -rw-r--r--. 1 boinc boinc       105 Apr 26 10:40 job.xml
[2026-04-26 13:04:18] -rw-r--r--. 2 boinc boinc 258959364 Apr 26 10:40 EVNT.49863712._000009.pool.root.1
[2026-04-26 13:04:18] -rw-r--r--. 1 boinc boinc      6542 Apr 26 10:40 init_data.xml
[2026-04-26 13:04:18] -rw-r--r--. 2 boinc boinc     15667 Apr 26 10:40 start_atlas.sh
[2026-04-26 13:04:18] drwxrwx--x. 2 boinc boinc      4096 Apr 26 10:40 shared
[2026-04-26 13:04:18] -rw-r--r--. 2 boinc boinc    697408 Apr 26 10:40 input.tar.gz
[2026-04-26 13:04:18] -rw-r--r--. 1 boinc boinc         0 Apr 26 10:40 boinc_lockfile
[2026-04-26 13:04:18] -rw-r--r--. 1 boinc boinc      2575 Apr 26 10:40 pandaJob.out
[2026-04-26 13:04:18] -rw-------. 1 boinc boinc    997522 Apr 26 10:40 agis_schedconf.cvmfs.json
[2026-04-26 13:04:18] -rw-------. 1 boinc boinc   1509089 Apr 26 10:40 agis_ddmendpoints.agis.ALL.json
[2026-04-26 13:04:18] -rw-------. 1 boinc boinc       443 Apr 26 10:41 workernode_map.json
[2026-04-26 13:04:18] drwx------. 5 boinc boinc      4096 Apr 26 10:41 pilot3
[2026-04-26 13:04:18] -rw-------. 1 boinc boinc 209987995 Apr 26 13:02 HITS.49863714._000221.pool.root.1
[2026-04-26 13:04:18] -rw-r--r--. 1 boinc boinc       487 Apr 26 13:02 boinc_task_state.xml
[2026-04-26 13:04:18] -rw-------. 1 boinc boinc        95 Apr 26 13:02 pilot_heartbeat.json
[2026-04-26 13:04:18] -rw-------. 1 boinc boinc      1027 Apr 26 13:03 memory_monitor_summary.json
[2026-04-26 13:04:18] -rw-------. 1 boinc boinc    293156 Apr 26 13:03 log.49863714._000221.job.log.tgz.1
[2026-04-26 13:04:18] -rw-------. 1 boinc boinc      6366 Apr 26 13:03 heartbeat_new.json
[2026-04-26 13:04:18] -rw-------. 1 boinc boinc      6257 Apr 26 13:03 heartbeat.json
[2026-04-26 13:04:18] -rw-r--r--. 1 boinc boinc      8192 Apr 26 13:04 boinc_mmap_file
[2026-04-26 13:04:18] -rw-r--r--. 1 boinc boinc        27 Apr 26 13:04 wrapper_checkpoint.txt
[2026-04-26 13:04:18] -rw-------. 1 boinc boinc      4906 Apr 26 13:04 pilotlog.txt
[2026-04-26 13:04:18] -rw-------. 1 boinc boinc    804358 Apr 26 13:04 log.49863714._000221.job.log.1
[2026-04-26 13:04:18] -rw-------. 1 boinc boinc       357 Apr 26 13:04 output.list
[2026-04-26 13:04:18] -rw-r--r--. 1 boinc boinc       410 Apr 26 13:04 runtime_log
[2026-04-26 13:04:18] -rw-------. 1 boinc boinc   1116160 Apr 26 13:04 result.tar.gz
[2026-04-26 13:04:18] -rw-r--r--. 1 boinc boinc      8844 Apr 26 13:04 runtime_log.err
[2026-04-26 13:04:18] -rw-------. 1 boinc boinc       662 Apr 26 13:04 b013abe3a099.diag
[2026-04-26 13:04:18] -rw-r--r--. 1 boinc boinc     20860 Apr 26 13:04 stderr.txt
[2026-04-26 13:04:18] HITS file was successfully produced:
[2026-04-26 13:04:18] -rw-------. 1 boinc boinc 209987995 Apr 26 13:02 shared/HITS.pool.root.1
[2026-04-26 13:04:18]  *** Contents of shared directory: ***
[2026-04-26 13:04:18] total 459760
[2026-04-26 13:04:18] -rw-r--r--. 2 boinc boinc 258959364 Apr 26 10:40 ATLAS.root_0
[2026-04-26 13:04:18] -rw-r--r--. 2 boinc boinc     15667 Apr 26 10:40 start_atlas.sh
[2026-04-26 13:04:18] -rw-r--r--. 2 boinc boinc    697408 Apr 26 10:40 input.tar.gz
[2026-04-26 13:04:18] -rw-------. 1 boinc boinc 209987995 Apr 26 13:02 HITS.pool.root.1
[2026-04-26 13:04:18] -rw-------. 1 boinc boinc   1116160 Apr 26 13:04 result.tar.gz
13:04:20 (1008948): run_atlas exited; CPU time 33260.169337
13:04:20 (1008948): called boinc_finish(0)

</stderr_txt>
]]>

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