Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:04:14 (2639): wrapper (7.7.26015): starting
15:04:14 (2639): wrapper: running run_atlas (--nthreads 8)
[2026-04-25 15:04:14] Arguments: --nthreads 8
[2026-04-25 15:04:14] Threads: 8
[2026-04-25 15:04:14] Checking for CVMFS
[2026-04-25 15:04:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-25 15:04:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-25 15:04:17] Running cvmfs_config stat atlas.cern.ch
[2026-04-25 15:04:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-25 15:04:18] 2.11.2.0 16919 14175 98832 158849 1 11 20798702 25165825 96 130560 0 5269120 99.912 5781439 15419 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-25 15:04:18] CVMFS is ok
[2026-04-25 15:04:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-25 15:04:18] Checking for apptainer binary...
[2026-04-25 15:04:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-25 15:04:19] Running /usr/bin/apptainer --version
[2026-04-25 15:04:19] apptainer version 1.3.2-1.el7
[2026-04-25 15:04:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-25 15:04:53] cg-vwn361.simple-grid.lan
[2026-04-25 15:04:53] apptainer works
[2026-04-25 15:04:53] Set ATHENA_PROC_NUMBER=8
[2026-04-25 15:04:53] Set ATHENA_CORE_NUMBER=8
[2026-04-25 15:04:54] Starting ATLAS job with PandaID=7114609894
[2026-04-25 15:04:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-25 19:25:12]  *** The last 200 lines of the pilot log: ***
[2026-04-25 19:25:12] 2026-04-25 17:23:56,494 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-25 19:25:12] 2026-04-25 17:23:56,494 | INFO     | log transfer has been attempted: DONE
[2026-04-25 19:25:12] 2026-04-25 17:23:56,494 | INFO     | job 7114609894 has finished - writing final server update
[2026-04-25 19:25:12] 2026-04-25 17:23:56,495 | INFO     | total number of processed events: 400 (read)
[2026-04-25 19:25:12] 2026-04-25 17:23:56,497 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-7114609894/memory_monitor_summary.json (trf name=prmon)
[2026-04-25 19:25:12] 2026-04-25 17:23:56,498 | INFO     | extracted standard info from prmon json
[2026-04-25 19:25:12] 2026-04-25 17:23:56,498 | INFO     | extracted standard memory fields from prmon json
[2026-04-25 19:25:12] 2026-04-25 17:23:56,498 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-25 19:25:12] 2026-04-25 17:23:56,498 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-25 19:25:12] 2026-04-25 17:23:56,504 | INFO     | fitting pss+swap vs Time
[2026-04-25 19:25:12] 2026-04-25 17:23:56,504 | INFO     | sum of square deviations: 4340323240.0
[2026-04-25 19:25:12] 2026-04-25 17:23:56,506 | INFO     | sum of deviations: 88533976564.99997
[2026-04-25 19:25:12] 2026-04-25 17:23:56,507 | INFO     | mean x (centered): 0.0
[2026-04-25 19:25:12] 2026-04-25 17:23:56,507 | INFO     | mean y: 2467237.1037344397
[2026-04-25 19:25:12] 2026-04-25 17:23:56,507 | INFO     | intersect: 2467237.1037344397
[2026-04-25 19:25:12] 2026-04-25 17:23:56,507 | INFO     | chi2: 8.48722899572509
[2026-04-25 19:25:12] 2026-04-25 17:23:56,508 | INFO     | sum of square deviations: 4075741535.0
[2026-04-25 19:25:12] 2026-04-25 17:23:56,510 | INFO     | sum of deviations: 102843261374.49994
[2026-04-25 19:25:12] 2026-04-25 17:23:56,510 | INFO     | mean x (centered): 0.0
[2026-04-25 19:25:12] 2026-04-25 17:23:56,510 | INFO     | mean y: 2475328.063559322
[2026-04-25 19:25:12] 2026-04-25 17:23:56,510 | INFO     | intersect: 2475328.063559322
[2026-04-25 19:25:12] 2026-04-25 17:23:56,511 | INFO     | chi2: 7.7954388701321555
[2026-04-25 19:25:12] 2026-04-25 17:23:56,511 | INFO     | current chi2=7.7954388701321555 (change=8.150953932565981 %)
[2026-04-25 19:25:12] 2026-04-25 17:23:56,511 | INFO     | right removable region: 235
[2026-04-25 19:25:12] 2026-04-25 17:23:56,512 | INFO     | sum of square deviations: 4075741535.0
[2026-04-25 19:25:12] 2026-04-25 17:23:56,514 | INFO     | sum of deviations: 1782801494.0000057
[2026-04-25 19:25:12] 2026-04-25 17:23:56,514 | INFO     | mean x (centered): 0.0
[2026-04-25 19:25:12] 2026-04-25 17:23:56,514 | INFO     | mean y: 2517216.13559322
[2026-04-25 19:25:12] 2026-04-25 17:23:56,514 | INFO     | intersect: 2517216.13559322
[2026-04-25 19:25:12] 2026-04-25 17:23:56,515 | INFO     | chi2: 3.2345714403041477
[2026-04-25 19:25:12] 2026-04-25 17:23:56,515 | INFO     | current chi2=3.2345714403041477 (change=61.888957609917675 %)
[2026-04-25 19:25:12] 2026-04-25 17:23:56,515 | INFO     | sum of square deviations: 3822136780.0
[2026-04-25 19:25:12] 2026-04-25 17:23:56,517 | INFO     | sum of deviations: -52891294643.999985
[2026-04-25 19:25:12] 2026-04-25 17:23:56,518 | INFO     | mean x (centered): 0.0
[2026-04-25 19:25:12] 2026-04-25 17:23:56,518 | INFO     | mean y: 2549969.1558441557
[2026-04-25 19:25:12] 2026-04-25 17:23:56,521 | INFO     | intersect: 2549969.1558441557
[2026-04-25 19:25:12] 2026-04-25 17:23:56,521 | INFO     | chi2: 1.0627388930550745
[2026-04-25 19:25:12] 2026-04-25 17:23:56,522 | INFO     | current chi2=1.0627388930550745 (change=67.14436788092257 %)
[2026-04-25 19:25:12] 2026-04-25 17:23:56,522 | INFO     | sum of square deviations: 3579276412.5
[2026-04-25 19:25:12] 2026-04-25 17:23:56,524 | INFO     | sum of deviations: -60530553638.0
[2026-04-25 19:25:12] 2026-04-25 17:23:56,524 | INFO     | mean x (centered): 0.0
[2026-04-25 19:25:12] 2026-04-25 17:23:56,524 | INFO     | mean y: 2554739.03539823
[2026-04-25 19:25:12] 2026-04-25 17:23:56,524 | INFO     | intersect: 2554739.03539823
[2026-04-25 19:25:12] 2026-04-25 17:23:56,525 | INFO     | chi2: 0.984692399064869
[2026-04-25 19:25:12] 2026-04-25 17:23:56,525 | INFO     | current chi2=0.984692399064869 (change=7.343901168973295 %)
[2026-04-25 19:25:12] 2026-04-25 17:23:56,525 | INFO     | left removable region: 15
[2026-04-25 19:25:12] 2026-04-25 17:23:56,526 | INFO     | sum of square deviations: 3301699115.0
[2026-04-25 19:25:12] 2026-04-25 17:23:56,527 | INFO     | sum of deviations: -43867377679.00001
[2026-04-25 19:25:12] 2026-04-25 17:23:56,528 | INFO     | mean x (centered): 0.0
[2026-04-25 19:25:12] 2026-04-25 17:23:56,528 | INFO     | mean y: 2565501.609090909
[2026-04-25 19:25:12] 2026-04-25 17:23:56,528 | INFO     | intersect: 2565501.609090909
[2026-04-25 19:25:12] 2026-04-25 17:23:56,528 | INFO     | chi2: 0.19091618692261028
[2026-04-25 19:25:12] 2026-04-25 17:23:56,528 | INFO     | current memory leak: -13.29 B/s (using 220 data points, chi2=0.19)
[2026-04-25 19:25:12] 2026-04-25 17:23:56,529 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2026-04-25 19:25:12] 2026-04-25 17:23:56,529 | INFO     | ..............................
[2026-04-25 19:25:12] 2026-04-25 17:23:56,529 | INFO     | . Timing measurements:
[2026-04-25 19:25:12] 2026-04-25 17:23:56,529 | INFO     | . get job = 0 s
[2026-04-25 19:25:12] 2026-04-25 17:23:56,529 | INFO     | . initial setup = 117 s
[2026-04-25 19:25:12] 2026-04-25 17:23:56,530 | INFO     | . payload setup = 191 s
[2026-04-25 19:25:12] 2026-04-25 17:23:56,530 | INFO     | . stage-in = 0 s
[2026-04-25 19:25:12] 2026-04-25 17:23:56,530 | INFO     | . payload execution = 14803 s
[2026-04-25 19:25:12] 2026-04-25 17:23:56,530 | INFO     | . stage-out = 3 s
[2026-04-25 19:25:12] 2026-04-25 17:23:56,530 | INFO     | . log creation = 1 s
[2026-04-25 19:25:12] 2026-04-25 17:23:56,530 | INFO     | ..............................
[2026-04-25 19:25:12] 2026-04-25 17:23:56,673 | INFO     | 
[2026-04-25 19:25:12] 2026-04-25 17:23:56,673 | INFO     | job summary report
[2026-04-25 19:25:12] 2026-04-25 17:23:56,673 | INFO     | --------------------------------------------------
[2026-04-25 19:25:12] 2026-04-25 17:23:56,673 | INFO     | PanDA job id: 7114609894
[2026-04-25 19:25:12] 2026-04-25 17:23:56,674 | INFO     | task id: 49545114
[2026-04-25 19:25:12] 2026-04-25 17:23:56,674 | INFO     | errors: (none)
[2026-04-25 19:25:12] 2026-04-25 17:23:56,674 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-25 19:25:12] 2026-04-25 17:23:56,674 | INFO     | pilot state: finished 
[2026-04-25 19:25:12] 2026-04-25 17:23:56,674 | INFO     | transexitcode: 0
[2026-04-25 19:25:12] 2026-04-25 17:23:56,674 | INFO     | exeerrorcode: 0
[2026-04-25 19:25:12] 2026-04-25 17:23:56,674 | INFO     | exeerrordiag: 
[2026-04-25 19:25:12] 2026-04-25 17:23:56,674 | INFO     | exitcode: 0
[2026-04-25 19:25:12] 2026-04-25 17:23:56,674 | INFO     | exitmsg: OK
[2026-04-25 19:25:12] 2026-04-25 17:23:56,674 | INFO     | cpuconsumptiontime: 55446 s
[2026-04-25 19:25:12] 2026-04-25 17:23:56,674 | INFO     | nevents: 400
[2026-04-25 19:25:12] 2026-04-25 17:23:56,675 | INFO     | neventsw: 0
[2026-04-25 19:25:12] 2026-04-25 17:23:56,675 | INFO     | pid: 11154
[2026-04-25 19:25:12] 2026-04-25 17:23:56,675 | INFO     | pgrp: 11154
[2026-04-25 19:25:12] 2026-04-25 17:23:56,675 | INFO     | corecount: 8
[2026-04-25 19:25:12] 2026-04-25 17:23:56,675 | INFO     | event service: False
[2026-04-25 19:25:12] 2026-04-25 17:23:56,675 | INFO     | sizes: {0: 2274046, 1: 2274731, 2: 2276560, 13: 2276560, 14998: 2307650, 15002: 2316648, 15006: 2316832, 15008: 2317026}
[2026-04-25 19:25:12] 2026-04-25 17:23:56,675 | INFO     | --------------------------------------------------
[2026-04-25 19:25:12] 2026-04-25 17:23:56,675 | INFO     | 
[2026-04-25 19:25:12] 2026-04-25 17:23:56,675 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-04-25 19:25:12] 2026-04-25 17:23:57,295 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-25 19:25:12] 2026-04-25 17:23:57,295 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-25 19:25:12] 2026-04-25 17:23:57,295 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-25 19:25:12] 2026-04-25 17:23:57,295 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-25 19:25:12] 2026-04-25 17:23:57,295 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-25 19:25:12] 2026-04-25 17:23:57,296 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-25 19:25:12] 2026-04-25 17:23:57,296 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-25 19:25:12] 2026-04-25 17:23:57,296 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-25 19:25:12] 2026-04-25 17:23:57,296 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-25 19:25:12] 2026-04-25 17:23:57,296 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-25 19:25:12] 2026-04-25 17:23:57,296 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-25 19:25:12] 2026-04-25 17:23:57,296 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-25 19:25:12] 2026-04-25 17:23:57,296 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-25 19:25:12] 2026-04-25 17:23:57,296 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-25 19:25:12] 2026-04-25 17:23:57,297 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-25 19:25:12] 2026-04-25 17:23:57,297 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-25 19:25:12] 2026-04-25 17:23:57,297 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-25 19:25:12] 2026-04-25 17:23:57,297 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-25 19:25:12] 2026-04-25 17:23:57,297 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-25 19:25:12] 2026-04-25 17:23:57,297 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-25 19:25:12] 2026-04-25 17:23:57,297 | INFO     | job 7114609894 has completed (purged errors)
[2026-04-25 19:25:12] 2026-04-25 17:23:57,298 | INFO     | overall cleanup function is called
[2026-04-25 19:25:12] 2026-04-25 17:23:58,306 | INFO     | --- collectZombieJob: --- 10, [11154]
[2026-04-25 19:25:12] 2026-04-25 17:23:58,306 | INFO     | zombie collector waiting for pid 11154
[2026-04-25 19:25:12] 2026-04-25 17:23:58,306 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-25 19:25:12] 2026-04-25 17:23:58,306 | INFO     | collected zombie processes
[2026-04-25 19:25:12] 2026-04-25 17:23:58,306 | INFO     | will attempt to kill all subprocesses of pid=11154
[2026-04-25 19:25:12] 2026-04-25 17:23:58,362 | INFO     | process IDs to be killed: [11154] (in reverse order)
[2026-04-25 19:25:12] 2026-04-25 17:23:59,179 | WARNING  | found no corresponding commands to process id(s)
[2026-04-25 19:25:12] 2026-04-25 17:23:59,180 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-25 19:25:12] 2026-04-25 17:23:59,182 | INFO     | did not find any defunct processes belonging to 11154
[2026-04-25 19:25:12] 2026-04-25 17:23:59,184 | INFO     | did not find any defunct processes belonging to 11154
[2026-04-25 19:25:12] 2026-04-25 17:23:59,184 | INFO     | Ready for new job
[2026-04-25 19:25:12] 2026-04-25 17:23:59,186 | INFO     | ***************************************
[2026-04-25 19:25:12] 2026-04-25 17:23:59,186 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-25 19:25:12] 2026-04-25 17:23:59,186 | INFO     | ***************************************
[2026-04-25 19:25:12] 2026-04-25 17:23:59,186 | INFO     | 
[2026-04-25 19:25:12] 2026-04-25 17:23:59,187 | INFO     | pilot is running in a VM
[2026-04-25 19:25:12] 2026-04-25 17:23:59,187 | INFO     | architecture information:
[2026-04-25 19:25:12] 2026-04-25 17:23:59,194 | INFO     | executing command: cat /etc/os-release
[2026-04-25 19:25:12] 2026-04-25 17:23:59,469 | INFO     | cat /etc/os-release:
[2026-04-25 19:25:12] NAME="CentOS Linux"
[2026-04-25 19:25:12] VERSION="7 (Core)"
[2026-04-25 19:25:12] ID="centos"
[2026-04-25 19:25:12] ID_LIKE="rhel fedora"
[2026-04-25 19:25:12] VERSION_ID="7"
[2026-04-25 19:25:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-25 19:25:12] ANSI_COLOR="0;31"
[2026-04-25 19:25:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-25 19:25:12] HOME_URL="https://www.centos.org/"
[2026-04-25 19:25:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-25 19:25:12] 
[2026-04-25 19:25:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-25 19:25:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-25 19:25:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-25 19:25:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-25 19:25:12] 
[2026-04-25 19:25:12] 2026-04-25 17:23:59,470 | INFO     | ***************************************
[2026-04-25 19:25:12] 2026-04-25 17:23:59,973 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-04-25 19:25:12] 2026-04-25 17:24:00,242 | INFO     | sufficient remaining disk space (494925774848 B)
[2026-04-25 19:25:12] 2026-04-25 17:24:00,243 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-25 19:25:12] 2026-04-25 17:24:00,243 | INFO     | current server update state: UPDATING_FINAL
[2026-04-25 19:25:12] 2026-04-25 17:24:00,243 | INFO     | update_server=False
[2026-04-25 19:25:12] 2026-04-25 17:24:00,243 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-25 19:25:12] 2026-04-25 17:24:00,246 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-25 19:25:12] 2026-04-25 17:24:00,248 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-25 19:25:12] 2026-04-25 17:24:00,248 | INFO     | aborting loop
[2026-04-25 19:25:12] 2026-04-25 17:24:00,271 | INFO     | all data control threads have been joined
[2026-04-25 19:25:12] 2026-04-25 17:24:00,495 | INFO     | all payload control threads have been joined
[2026-04-25 19:25:12] 2026-04-25 17:24:01,226 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-25 19:25:12] 2026-04-25 17:24:01,249 | INFO     | [job] retrieve thread has finished
[2026-04-25 19:25:12] 2026-04-25 17:24:01,254 | INFO     | [job] job monitor thread has finished
[2026-04-25 19:25:12] 2026-04-25 17:24:01,277 | INFO     | [data] control thread has finished
[2026-04-25 19:25:12] 2026-04-25 17:24:01,329 | INFO     | [job] validate thread has finished
[2026-04-25 19:25:12] 2026-04-25 17:24:01,341 | INFO     | [payload] validate_pre thread has finished
[2026-04-25 19:25:12] 2026-04-25 17:24:01,343 | INFO     | [payload] execute_payloads thread has finished
[2026-04-25 19:25:12] 2026-04-25 17:24:01,441 | INFO     | [data] copytool_in thread has finished
[2026-04-25 19:25:12] 2026-04-25 17:24:01,462 | INFO     | all job control threads have been joined
[2026-04-25 19:25:12] 2026-04-25 17:24:01,501 | INFO     | [payload] control thread has finished
[2026-04-25 19:25:12] 2026-04-25 17:24:01,639 | INFO     | [job] create_data_payload thread has finished
[2026-04-25 19:25:12] 2026-04-25 17:24:01,659 | INFO     | [payload] failed_post thread has finished
[2026-04-25 19:25:12] 2026-04-25 17:24:01,687 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-25 19:25:12] 2026-04-25 17:24:02,437 | INFO     | [payload] validate_post thread has finished
[2026-04-25 19:25:12] 2026-04-25 17:24:02,468 | INFO     | [job] control thread has finished
[2026-04-25 19:25:12] 2026-04-25 17:24:02,693 | INFO     | [job] queue monitor thread has finished
[2026-04-25 19:25:12] 2026-04-25 17:24:03,233 | INFO     | [data] copytool_out thread has finished
[2026-04-25 19:25:12] 2026-04-25 17:24:04,255 | INFO     | [data] queue_monitor thread has finished
[2026-04-25 19:25:12] 2026-04-25 17:24:11,041 | INFO     | job.realtimelogging is not enabled
[2026-04-25 19:25:12] 2026-04-25 17:24:12,047 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-25 19:25:12] 2026-04-25 17:24:29,287 | INFO     | PID=6691 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-04-25 19:25:12] 2026-04-25 17:24:29,288 | INFO     | .. there are 2 such processes running
[2026-04-25 19:25:12] 2026-04-25 17:24:29,288 | INFO     | found 0 job(s) in 20 queues
[2026-04-25 19:25:12] 2026-04-25 17:24:29,288 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-25 19:25:12] 2026-04-25 17:24:29,288 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-25 19:25:12] 2026-04-25 17:25:00,204 | INFO     | [monitor] cgroup control has ended
[2026-04-25 19:25:12] 2026-04-25 17:25:01,344 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139656492635968)>', '<ExcThread(monitor, started 139656179980032)>']
[2026-04-25 19:25:12] 2026-04-25 17:25:01,481 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-25 19:25:12] 2026-04-25 17:25:01,481 | INFO     | [monitor] control thread has ended
[2026-04-25 19:25:12] 2026-04-25 17:25:06,370 | INFO     | all workflow threads have been joined
[2026-04-25 19:25:12] 2026-04-25 17:25:06,370 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-25 19:25:12] 2026-04-25 17:25:06,370 | INFO     | traces error code: 0
[2026-04-25 19:25:12] 2026-04-25 17:25:06,371 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-25 19:25:12] 2026-04-25 17:25:06,831 [wrapper] ==== pilot stdout END ====
[2026-04-25 19:25:12] 2026-04-25 17:25:06,923 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-25 19:25:12] 2026-04-25 17:25:07,026 [wrapper] pilotpid: 6691
[2026-04-25 19:25:12] 2026-04-25 17:25:07,113 [wrapper] Pilot exit status: 0
[2026-04-25 19:25:12] 2026-04-25 17:25:07,584 [wrapper] pandaids: 7114609894
[2026-04-25 19:25:12] 2026-04-25 17:25:08,551 [wrapper] cleanup supervisor_pilot 18173 6692
[2026-04-25 19:25:12] 2026-04-25 17:25:08,614 [wrapper] Test setup, not cleaning
[2026-04-25 19:25:12] 2026-04-25 17:25:08,671 [wrapper] apfmon messages muted
[2026-04-25 19:25:12] 2026-04-25 17:25:08,771 [wrapper] ==== wrapper stdout END ====
[2026-04-25 19:25:12] 2026-04-25 17:25:08,855 [wrapper] ==== wrapper stderr END ====
[2026-04-25 19:25:12]  *** Error codes and diagnostics ***
[2026-04-25 19:25:12]     "exeErrorCode": 0,
[2026-04-25 19:25:12]     "pilotErrorCode": 0,
[2026-04-25 19:25:12]  *** Listing of results directory ***
[2026-04-25 19:25:12] total 456292
[2026-04-25 19:25:12] -rw-r--r--. 1 boinc boinc    683926 Apr 25 13:58 pilot3.tar.gz
[2026-04-25 19:25:12] -rwx------. 1 boinc boinc     36322 Apr 25 14:14 runpilot2-wrapper.sh
[2026-04-25 19:25:12] -rw-r--r--. 1 boinc boinc      5631 Apr 25 14:18 queuedata.json
[2026-04-25 19:25:12] -rw-r--r--. 1 boinc boinc       100 Apr 25 15:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-25 19:25:12] -rwxr-xr-x. 1 boinc boinc      7986 Apr 25 15:04 run_atlas
[2026-04-25 19:25:12] -rw-r--r--. 1 boinc boinc       105 Apr 25 15:04 job.xml
[2026-04-25 19:25:12] -rw-r--r--. 1 boinc boinc      6305 Apr 25 15:04 init_data.xml
[2026-04-25 19:25:12] -rw-r--r--. 2 boinc boinc 276325038 Apr 25 15:04 EVNT.49539591._000531.pool.root.1
[2026-04-25 19:25:12] -rw-r--r--. 2 boinc boinc     15667 Apr 25 15:04 start_atlas.sh
[2026-04-25 19:25:12] drwxrwx--x. 2 boinc boinc        68 Apr 25 15:04 shared
[2026-04-25 19:25:12] -rw-r--r--. 2 boinc boinc    697436 Apr 25 15:04 input.tar.gz
[2026-04-25 19:25:12] -rw-r--r--. 1 boinc boinc         0 Apr 25 15:04 boinc_lockfile
[2026-04-25 19:25:12] -rw-r--r--. 1 boinc boinc      2607 Apr 25 15:04 pandaJob.out
[2026-04-25 19:25:12] -rw-------. 1 boinc boinc       415 Apr 25 15:13 workernode_map.json
[2026-04-25 19:25:12] -rw-------. 1 boinc boinc    997243 Apr 25 15:13 agis_schedconf.cvmfs.json
[2026-04-25 19:25:12] drwx------. 5 boinc boinc      4096 Apr 25 15:13 pilot3
[2026-04-25 19:25:12] -rw-------. 1 boinc boinc 183206125 Apr 25 19:22 HITS.49545114._035409.pool.root.1
[2026-04-25 19:25:12] -rw-r--r--. 1 boinc boinc       488 Apr 25 19:22 boinc_task_state.xml
[2026-04-25 19:25:12] -rw-------. 1 boinc boinc        95 Apr 25 19:23 pilot_heartbeat.json
[2026-04-25 19:25:12] -rw-------. 1 boinc boinc      1011 Apr 25 19:23 memory_monitor_summary.json
[2026-04-25 19:25:12] -rw-------. 1 boinc boinc   1509089 Apr 25 19:23 agis_ddmendpoints.agis.ALL.json
[2026-04-25 19:25:12] -rw-------. 1 boinc boinc    396418 Apr 25 19:23 log.49545114._035409.job.log.tgz.1
[2026-04-25 19:25:12] -rw-------. 1 boinc boinc      6334 Apr 25 19:23 heartbeat_new.json
[2026-04-25 19:25:12] -rw-------. 1 boinc boinc      6225 Apr 25 19:23 heartbeat.json
[2026-04-25 19:25:12] -rw-r--r--. 1 boinc boinc      8192 Apr 25 19:25 boinc_mmap_file
[2026-04-25 19:25:12] -rw-r--r--. 1 boinc boinc        28 Apr 25 19:25 wrapper_checkpoint.txt
[2026-04-25 19:25:12] -rw-------. 1 boinc boinc      4954 Apr 25 19:25 pilotlog.txt
[2026-04-25 19:25:12] -rw-------. 1 boinc boinc   1395597 Apr 25 19:25 log.49545114._035409.job.log.1
[2026-04-25 19:25:12] -rw-------. 1 boinc boinc       357 Apr 25 19:25 output.list
[2026-04-25 19:25:12] -rw-r--r--. 1 boinc boinc       410 Apr 25 19:25 runtime_log
[2026-04-25 19:25:12] -rw-------. 1 boinc boinc   1812480 Apr 25 19:25 result.tar.gz
[2026-04-25 19:25:12] -rw-r--r--. 1 boinc boinc      8439 Apr 25 19:25 runtime_log.err
[2026-04-25 19:25:12] -rw-------. 1 boinc boinc       656 Apr 25 19:25 b009715108fc.diag
[2026-04-25 19:25:12] -rw-r--r--. 1 boinc boinc     20627 Apr 25 19:25 stderr.txt
[2026-04-25 19:25:12] HITS file was successfully produced:
[2026-04-25 19:25:12] -rw-------. 1 boinc boinc 183206125 Apr 25 19:22 shared/HITS.pool.root.1
[2026-04-25 19:25:12]  *** Contents of shared directory: ***
[2026-04-25 19:25:12] total 451240
[2026-04-25 19:25:12] -rw-r--r--. 2 boinc boinc 276325038 Apr 25 15:04 ATLAS.root_0
[2026-04-25 19:25:12] -rw-r--r--. 2 boinc boinc     15667 Apr 25 15:04 start_atlas.sh
[2026-04-25 19:25:12] -rw-r--r--. 2 boinc boinc    697436 Apr 25 15:04 input.tar.gz
[2026-04-25 19:25:12] -rw-------. 1 boinc boinc 183206125 Apr 25 19:22 HITS.pool.root.1
[2026-04-25 19:25:12] -rw-------. 1 boinc boinc   1812480 Apr 25 19:25 result.tar.gz
19:25:13 (2639): run_atlas exited; CPU time 55590.725421
19:25:13 (2639): called boinc_finish(0)

</stderr_txt>
]]>

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