Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:40:38 (1477189): wrapper (7.7.26015): starting
16:40:38 (1477189): wrapper: running run_atlas (--nthreads 12)
[2026-04-25 16:40:38] Arguments: --nthreads 12
[2026-04-25 16:40:38] Threads: 12
[2026-04-25 16:40:38] Checking for CVMFS
[2026-04-25 16:40:38] No cvmfs_config command found, will try listing directly
[2026-04-25 16:40:38] CVMFS is ok
[2026-04-25 16:40:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-25 16:40:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-25 16:40:38] Further information can be found at the LHC@home message board.
[2026-04-25 16:40:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-25 16:40:38] Checking for apptainer binary...
[2026-04-25 16:40:38] which: no apptainer in ((null))
[2026-04-25 16:40:38] apptainer is not installed, using version from CVMFS
[2026-04-25 16:40:38] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-25 16:40:38] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot72/slots/19/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut22.grid.cesnet.cz
[2026-04-25 16:40:38] apptainer works
[2026-04-25 16:40:38] Set ATHENA_PROC_NUMBER=12
[2026-04-25 16:40:38] Set ATHENA_CORE_NUMBER=12
[2026-04-25 16:40:38] Starting ATLAS job with PandaID=7114608717
[2026-04-25 16:40:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot72/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-25 17:00:52]  *** The last 200 lines of the pilot log: ***
[2026-04-25 17:00:52]  guid=abdc7aa9-55fb-4300-8264-8860962a6d89
[2026-04-25 17:00:52]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-04-25 17:00:52]  is_altstaged=None
[2026-04-25 17:00:52]  is_tar=False
[2026-04-25 17:00:52]  lfn=log.49545114._035188.job.log.tgz.1
[2026-04-25 17:00:52]  mtime=0
[2026-04-25 17:00:52]  protocol_id=None
[2026-04-25 17:00:52]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-25 17:00:52]  replicas=None
[2026-04-25 17:00:52]  scope=mc23_13p6TeV
[2026-04-25 17:00:52]  status=None
[2026-04-25 17:00:52]  status_code=0
[2026-04-25 17:00:52]  storage_token=
[2026-04-25 17:00:52]  surl=/var/lib/boinc/var/slot72/slots/19/PanDA_Pilot-7114608717/log.49545114._035188.job.log.tgz.1
[2026-04-25 17:00:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/57/89/log.49545114._035188.job.log.tgz.1
[2026-04-25 17:00:52]  workdir=None
[2026-04-25 17:00:52] ]
[2026-04-25 17:00:52] 2026-04-25 15:00:06,353 | INFO     | transferring file log.49545114._035188.job.log.tgz.1 from /var/lib/boinc/var/slot72/slots/19/PanDA_Pilot-7114608717/log.49545114._035188.job.log.tgz.1 to /var/lib/
[2026-04-25 17:00:52] 2026-04-25 15:00:06,353 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot72/slots/19/PanDA_Pilot-7114608717/log.49545114._035188.job.log.tgz.1 /var/lib/boinc/var/slot72/slots/19/
[2026-04-25 17:00:52] 2026-04-25 15:00:06,367 | INFO     | adding to output.list: log.49545114._035188.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/57/89/log.49545114._035188.job.log.tg
[2026-04-25 17:00:52] 2026-04-25 15:00:06,367 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-25 17:00:52] 2026-04-25 15:00:06,367 | INFO     | summary of transferred files:
[2026-04-25 17:00:52] 2026-04-25 15:00:06,367 | INFO     |  -- lfn=log.49545114._035188.job.log.tgz.1, status_code=0, status=transferred
[2026-04-25 17:00:52] 2026-04-25 15:00:06,367 | INFO     | stage-out finished correctly
[2026-04-25 17:00:52] 2026-04-25 15:00:06,391 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-25 17:00:52] 2026-04-25 15:00:06,418 | INFO     | job 7114608717 has state=finished
[2026-04-25 17:00:52] 2026-04-25 15:00:06,419 | INFO     | preparing for final server update for job 7114608717 in state='finished'
[2026-04-25 17:00:52] 2026-04-25 15:00:06,860 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-04-25 17:00:52] 2026-04-25 15:00:06,860 | INFO     | reading metadata from: /var/lib/boinc/var/slot72/slots/19/PanDA_Pilot-7114608717/jobReport.json
[2026-04-25 17:00:52] 2026-04-25 15:00:06,861 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot72/slots/19/workernode_map.json
[2026-04-25 17:00:52] 2026-04-25 15:00:06,861 | INFO     | this job has now completed (state=finished)
[2026-04-25 17:00:52] 2026-04-25 15:00:06,861 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-25 17:00:52] 2026-04-25 15:00:06,861 | INFO     | log transfer has been attempted: DONE
[2026-04-25 17:00:52] 2026-04-25 15:00:06,861 | INFO     | job 7114608717 has finished - writing final server update
[2026-04-25 17:00:52] 2026-04-25 15:00:06,861 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1213225/.job.ad'
[2026-04-25 17:00:52] 2026-04-25 15:00:06,861 | INFO     | total number of processed events: 400 (read)
[2026-04-25 17:00:52] 2026-04-25 15:00:06,870 | INFO     | using path: /var/lib/boinc/var/slot72/slots/19/PanDA_Pilot-7114608717/memory_monitor_summary.json (trf name=prmon)
[2026-04-25 17:00:52] 2026-04-25 15:00:06,870 | INFO     | extracted standard info from prmon json
[2026-04-25 17:00:52] 2026-04-25 15:00:06,870 | INFO     | extracted standard memory fields from prmon json
[2026-04-25 17:00:52] 2026-04-25 15:00:06,870 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-25 17:00:52] 2026-04-25 15:00:06,870 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-25 17:00:52] 2026-04-25 15:00:06,871 | INFO     | fitting pss+swap vs Time
[2026-04-25 17:00:52] 2026-04-25 15:00:06,871 | INFO     | sum of square deviations: 532103.0
[2026-04-25 17:00:52] 2026-04-25 15:00:06,871 | INFO     | sum of deviations: 82934562.99999999
[2026-04-25 17:00:52] 2026-04-25 15:00:06,871 | INFO     | mean x (centered): 0.0
[2026-04-25 17:00:52] 2026-04-25 15:00:06,871 | INFO     | mean y: 2981152.8333333335
[2026-04-25 17:00:52] 2026-04-25 15:00:06,871 | INFO     | intersect: 2981152.8333333335
[2026-04-25 17:00:52] 2026-04-25 15:00:06,871 | INFO     | chi2: 0.004690984586947916
[2026-04-25 17:00:52] 2026-04-25 15:00:06,871 | INFO     | current memory leak: 155.86 B/s (using 12 data points, chi2=0.00)
[2026-04-25 17:00:52] 2026-04-25 15:00:06,871 | INFO     | could have reported an average CPU frequency of 3612 MHz (4 samples)
[2026-04-25 17:00:52] 2026-04-25 15:00:06,871 | INFO     | ..............................
[2026-04-25 17:00:52] 2026-04-25 15:00:06,871 | INFO     | . Timing measurements:
[2026-04-25 17:00:52] 2026-04-25 15:00:06,871 | INFO     | . get job = 0 s
[2026-04-25 17:00:52] 2026-04-25 15:00:06,871 | INFO     | . initial setup = 3 s
[2026-04-25 17:00:52] 2026-04-25 15:00:06,871 | INFO     | . payload setup = 4 s
[2026-04-25 17:00:52] 2026-04-25 15:00:06,871 | INFO     | . stage-in = 0 s
[2026-04-25 17:00:52] 2026-04-25 15:00:06,871 | INFO     | . payload execution = 1141 s
[2026-04-25 17:00:52] 2026-04-25 15:00:06,871 | INFO     | . stage-out = 0 s
[2026-04-25 17:00:52] 2026-04-25 15:00:06,871 | INFO     | . log creation = 0 s
[2026-04-25 17:00:52] 2026-04-25 15:00:06,871 | INFO     | ..............................
[2026-04-25 17:00:52] 2026-04-25 15:00:06,897 | INFO     | 
[2026-04-25 17:00:52] 2026-04-25 15:00:06,897 | INFO     | job summary report
[2026-04-25 17:00:52] 2026-04-25 15:00:06,897 | INFO     | --------------------------------------------------
[2026-04-25 17:00:52] 2026-04-25 15:00:06,897 | INFO     | PanDA job id: 7114608717
[2026-04-25 17:00:52] 2026-04-25 15:00:06,897 | INFO     | task id: 49545114
[2026-04-25 17:00:52] 2026-04-25 15:00:06,897 | INFO     | errors: (none)
[2026-04-25 17:00:52] 2026-04-25 15:00:06,897 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-25 17:00:52] 2026-04-25 15:00:06,898 | INFO     | pilot state: finished 
[2026-04-25 17:00:52] 2026-04-25 15:00:06,898 | INFO     | transexitcode: 0
[2026-04-25 17:00:52] 2026-04-25 15:00:06,898 | INFO     | exeerrorcode: 0
[2026-04-25 17:00:52] 2026-04-25 15:00:06,898 | INFO     | exeerrordiag: 
[2026-04-25 17:00:52] 2026-04-25 15:00:06,898 | INFO     | exitcode: 0
[2026-04-25 17:00:52] 2026-04-25 15:00:06,898 | INFO     | exitmsg: OK
[2026-04-25 17:00:52] 2026-04-25 15:00:06,898 | INFO     | cpuconsumptiontime: 11907 s
[2026-04-25 17:00:52] 2026-04-25 15:00:06,898 | INFO     | nevents: 400
[2026-04-25 17:00:52] 2026-04-25 15:00:06,898 | INFO     | neventsw: 0
[2026-04-25 17:00:52] 2026-04-25 15:00:06,898 | INFO     | pid: 1487481
[2026-04-25 17:00:52] 2026-04-25 15:00:06,898 | INFO     | pgrp: 1487481
[2026-04-25 17:00:52] 2026-04-25 15:00:06,898 | INFO     | corecount: 12
[2026-04-25 17:00:52] 2026-04-25 15:00:06,898 | INFO     | event service: False
[2026-04-25 17:00:52] 2026-04-25 15:00:06,898 | INFO     | sizes: {0: 2276509, 11: 2276509, 1148: 2301121, 1149: 2310198, 1150: 2310336}
[2026-04-25 17:00:52] 2026-04-25 15:00:06,898 | INFO     | --------------------------------------------------
[2026-04-25 17:00:52] 2026-04-25 15:00:06,898 | INFO     | 
[2026-04-25 17:00:52] 2026-04-25 15:00:06,898 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot72/slots/19
[2026-04-25 17:00:52] 2026-04-25 15:00:06,915 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-25 17:00:52] 2026-04-25 15:00:06,917 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-25 17:00:52] 2026-04-25 15:00:06,917 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-25 17:00:52] 2026-04-25 15:00:06,917 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-25 17:00:52] 2026-04-25 15:00:06,917 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-25 17:00:52] 2026-04-25 15:00:06,917 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-25 17:00:52] 2026-04-25 15:00:06,917 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-25 17:00:52] 2026-04-25 15:00:06,917 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-25 17:00:52] 2026-04-25 15:00:06,917 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-25 17:00:52] 2026-04-25 15:00:06,917 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-25 17:00:52] 2026-04-25 15:00:06,917 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-25 17:00:52] 2026-04-25 15:00:06,917 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-25 17:00:52] 2026-04-25 15:00:06,917 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-25 17:00:52] 2026-04-25 15:00:06,917 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-25 17:00:52] 2026-04-25 15:00:06,917 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-25 17:00:52] 2026-04-25 15:00:06,917 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-25 17:00:52] 2026-04-25 15:00:06,917 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-25 17:00:52] 2026-04-25 15:00:06,917 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-25 17:00:52] 2026-04-25 15:00:06,917 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-25 17:00:52] 2026-04-25 15:00:06,917 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-25 17:00:52] 2026-04-25 15:00:06,917 | INFO     | job 7114608717 has completed (purged errors)
[2026-04-25 17:00:52] 2026-04-25 15:00:06,917 | INFO     | overall cleanup function is called
[2026-04-25 17:00:52] 2026-04-25 15:00:07,538 | WARNING  | process 1487481 can no longer be monitored (due to stat problems) - aborting
[2026-04-25 17:00:52] 2026-04-25 15:00:07,683 | INFO     | using path: /var/lib/boinc/var/slot72/slots/19/memory_monitor_summary.json (trf name=prmon)
[2026-04-25 17:00:52] 2026-04-25 15:00:07,921 | INFO     | --- collectZombieJob: --- 10, [1487481]
[2026-04-25 17:00:52] 2026-04-25 15:00:07,922 | INFO     | zombie collector waiting for pid 1487481
[2026-04-25 17:00:52] 2026-04-25 15:00:07,922 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-25 17:00:52] 2026-04-25 15:00:07,922 | INFO     | collected zombie processes
[2026-04-25 17:00:52] 2026-04-25 15:00:07,922 | INFO     | will attempt to kill all subprocesses of pid=1487481
[2026-04-25 17:00:52] 2026-04-25 15:00:08,884 | INFO     | number of running child processes to parent process 1487481: 1
[2026-04-25 17:00:52] 2026-04-25 15:00:08,884 | INFO     | maximum number of monitored processes: 6
[2026-04-25 17:00:52] 2026-04-25 15:00:08,884 | INFO     | aborting job monitoring since job object (job id=7114608717) has expired
[2026-04-25 17:00:52] 2026-04-25 15:00:09,200 | INFO     | PID=1481728 has CPU usage=13.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-25 17:00:52] 2026-04-25 15:00:09,200 | INFO     | .. there are 2 such processes running
[2026-04-25 17:00:52] 2026-04-25 15:00:09,203 | INFO     | process IDs to be killed: [1487481] (in reverse order)
[2026-04-25 17:00:52] 2026-04-25 15:00:09,294 | WARNING  | found no corresponding commands to process id(s)
[2026-04-25 17:00:52] 2026-04-25 15:00:09,294 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-25 17:00:52] 2026-04-25 15:00:09,310 | INFO     | did not find any defunct processes belonging to 1487481
[2026-04-25 17:00:52] 2026-04-25 15:00:09,320 | INFO     | did not find any defunct processes belonging to 1487481
[2026-04-25 17:00:52] 2026-04-25 15:00:09,320 | INFO     | Ready for new job
[2026-04-25 17:00:52] 2026-04-25 15:00:09,321 | INFO     | ***************************************
[2026-04-25 17:00:52] 2026-04-25 15:00:09,322 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-25 17:00:52] 2026-04-25 15:00:09,322 | INFO     | ***************************************
[2026-04-25 17:00:52] 2026-04-25 15:00:09,322 | INFO     | 
[2026-04-25 17:00:52] 2026-04-25 15:00:09,325 | INFO     | architecture information:
[2026-04-25 17:00:52] 2026-04-25 15:00:09,325 | INFO     | executing command: cat /etc/os-release
[2026-04-25 17:00:52] 2026-04-25 15:00:09,339 | INFO     | cat /etc/os-release:
[2026-04-25 17:00:52] NAME="CentOS Linux"
[2026-04-25 17:00:52] VERSION="7 (Core)"
[2026-04-25 17:00:52] ID="centos"
[2026-04-25 17:00:52] ID_LIKE="rhel fedora"
[2026-04-25 17:00:52] VERSION_ID="7"
[2026-04-25 17:00:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-25 17:00:52] ANSI_COLOR="0;31"
[2026-04-25 17:00:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-25 17:00:52] HOME_URL="https://www.centos.org/"
[2026-04-25 17:00:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-25 17:00:52] 
[2026-04-25 17:00:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-25 17:00:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-25 17:00:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-25 17:00:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-25 17:00:52] 
[2026-04-25 17:00:52] 2026-04-25 15:00:09,339 | INFO     | ***************************************
[2026-04-25 17:00:52] 2026-04-25 15:00:09,842 | INFO     | executing command: df -mP /var/lib/boinc/var/slot72/slots/19
[2026-04-25 17:00:52] 2026-04-25 15:00:09,857 | INFO     | sufficient remaining disk space (323452141568 B)
[2026-04-25 17:00:52] 2026-04-25 15:00:09,857 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-25 17:00:52] 2026-04-25 15:00:09,858 | INFO     | current server update state: UPDATING_FINAL
[2026-04-25 17:00:52] 2026-04-25 15:00:09,858 | INFO     | update_server=False
[2026-04-25 17:00:52] 2026-04-25 15:00:09,858 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-25 17:00:52] 2026-04-25 15:00:09,858 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-25 17:00:52] 2026-04-25 15:00:09,858 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-25 17:00:52] 2026-04-25 15:00:09,859 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-04-25 17:00:52] 2026-04-25 15:00:09,859 | INFO     | will abort loop
[2026-04-25 17:00:52] 2026-04-25 15:00:09,859 | INFO     | found 0 job(s) in 20 queues
[2026-04-25 17:00:52] 2026-04-25 15:00:09,860 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-25 17:00:52] 2026-04-25 15:00:09,860 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-25 17:00:52] 2026-04-25 15:00:09,934 | INFO     | all data control threads have been joined
[2026-04-25 17:00:52] 2026-04-25 15:00:10,103 | INFO     | all payload control threads have been joined
[2026-04-25 17:00:52] 2026-04-25 15:00:10,121 | INFO     | all job control threads have been joined
[2026-04-25 17:00:52] 2026-04-25 15:00:10,863 | INFO     | [job] retrieve thread has finished
[2026-04-25 17:00:52] 2026-04-25 15:00:10,865 | INFO     | [job] job monitor thread has finished
[2026-04-25 17:00:52] 2026-04-25 15:00:10,940 | INFO     | [data] control thread has finished
[2026-04-25 17:00:52] 2026-04-25 15:00:11,108 | INFO     | [payload] control thread has finished
[2026-04-25 17:00:52] 2026-04-25 15:00:11,126 | INFO     | [job] control thread has finished
[2026-04-25 17:00:52] 2026-04-25 15:00:11,273 | INFO     | [payload] execute_payloads thread has finished
[2026-04-25 17:00:52] 2026-04-25 15:00:11,310 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-25 17:00:52] 2026-04-25 15:00:11,614 | INFO     | [payload] validate_post thread has finished
[2026-04-25 17:00:52] 2026-04-25 15:00:11,864 | INFO     | [data] copytool_out thread has finished
[2026-04-25 17:00:52] 2026-04-25 15:00:11,906 | INFO     | [job] create_data_payload thread has finished
[2026-04-25 17:00:52] 2026-04-25 15:00:11,907 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-25 17:00:52] 2026-04-25 15:00:11,919 | INFO     | [job] validate thread has finished
[2026-04-25 17:00:52] 2026-04-25 15:00:12,018 | INFO     | [payload] validate_pre thread has finished
[2026-04-25 17:00:52] 2026-04-25 15:00:12,120 | INFO     | [data] copytool_in thread has finished
[2026-04-25 17:00:52] 2026-04-25 15:00:12,277 | INFO     | [payload] failed_post thread has finished
[2026-04-25 17:00:52] 2026-04-25 15:00:12,424 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-25 17:00:52] 2026-04-25 15:00:12,911 | INFO     | [job] queue monitor thread has finished
[2026-04-25 17:00:52] 2026-04-25 15:00:16,430 | INFO     | [data] queue_monitor thread has finished
[2026-04-25 17:00:52] 2026-04-25 15:00:47,254 | INFO     | [monitor] cgroup control has ended
[2026-04-25 17:00:52] 2026-04-25 15:00:47,514 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22404603774784)>', '<ExcThread(monitor, started 22404364769024)>']
[2026-04-25 17:00:52] 2026-04-25 15:00:48,049 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-25 17:00:52] 2026-04-25 15:00:48,050 | INFO     | [monitor] control thread has ended
[2026-04-25 17:00:52] 2026-04-25 15:00:52,539 | INFO     | all workflow threads have been joined
[2026-04-25 17:00:52] 2026-04-25 15:00:52,540 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-25 17:00:52] 2026-04-25 15:00:52,540 | INFO     | traces error code: 0
[2026-04-25 17:00:52] 2026-04-25 15:00:52,540 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-25 17:00:52] 2026-04-25 15:00:52,632 [wrapper] ==== pilot stdout END ====
[2026-04-25 17:00:52] 2026-04-25 15:00:52,634 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-25 17:00:52] 2026-04-25 15:00:52,638 [wrapper] pilotpid: 1481728
[2026-04-25 17:00:52] 2026-04-25 15:00:52,640 [wrapper] Pilot exit status: 0
[2026-04-25 17:00:52] 2026-04-25 15:00:52,647 [wrapper] pandaids: 7114608717
[2026-04-25 17:00:52] 2026-04-25 15:00:52,708 [wrapper] cleanup supervisor_pilot 1508994 1481729
[2026-04-25 17:00:52] 2026-04-25 15:00:52,712 [wrapper] Test setup, not cleaning
[2026-04-25 17:00:52] 2026-04-25 15:00:52,714 [wrapper] apfmon messages muted
[2026-04-25 17:00:52] 2026-04-25 15:00:52,715 [wrapper] ==== wrapper stdout END ====
[2026-04-25 17:00:52] 2026-04-25 15:00:52,717 [wrapper] ==== wrapper stderr END ====
[2026-04-25 17:00:52]  *** Error codes and diagnostics ***
[2026-04-25 17:00:52]     "exeErrorCode": 0,
[2026-04-25 17:00:52]     "pilotErrorCode": 0,
[2026-04-25 17:00:52]  *** Listing of results directory ***
[2026-04-25 17:00:52] total 460012
[2026-04-25 17:00:52] -rw-r--r--. 1 boinc boinc    683926 Apr 25 13:58 pilot3.tar.gz
[2026-04-25 17:00:52] -rwx------. 1 boinc boinc     36322 Apr 25 13:59 runpilot2-wrapper.sh
[2026-04-25 17:00:52] -rw-r--r--. 1 boinc boinc      5631 Apr 25 14:09 queuedata.json
[2026-04-25 17:00:52] -rw-r--r--. 1 boinc boinc       100 Apr 25 16:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-25 17:00:52] -rwxr-xr-x. 1 boinc boinc      7986 Apr 25 16:40 run_atlas
[2026-04-25 17:00:52] -rw-r--r--. 1 boinc boinc       105 Apr 25 16:40 job.xml
[2026-04-25 17:00:52] -rw-r--r--. 1 boinc boinc      6629 Apr 25 16:40 init_data.xml
[2026-04-25 17:00:52] -rw-r--r--. 2 boinc boinc 279008572 Apr 25 16:40 EVNT.49539591._000331.pool.root.1
[2026-04-25 17:00:52] -rw-r--r--. 2 boinc boinc     15667 Apr 25 16:40 start_atlas.sh
[2026-04-25 17:00:52] drwxrwx--x. 2 boinc boinc      4096 Apr 25 16:40 shared
[2026-04-25 17:00:52] -rw-r--r--. 2 boinc boinc    697428 Apr 25 16:40 input.tar.gz
[2026-04-25 17:00:52] -rw-r--r--. 1 boinc boinc         0 Apr 25 16:40 boinc_lockfile
[2026-04-25 17:00:52] -rw-r--r--. 1 boinc boinc      2603 Apr 25 16:40 pandaJob.out
[2026-04-25 17:00:52] -rw-------. 1 boinc boinc    997235 Apr 25 16:40 agis_schedconf.cvmfs.json
[2026-04-25 17:00:52] -rw-------. 1 boinc boinc   1509089 Apr 25 16:40 agis_ddmendpoints.agis.ALL.json
[2026-04-25 17:00:52] -rw-------. 1 boinc boinc       444 Apr 25 16:40 workernode_map.json
[2026-04-25 17:00:52] drwx------. 5 boinc boinc      4096 Apr 25 16:40 pilot3
[2026-04-25 17:00:52] -rw-------. 1 boinc boinc 186960570 Apr 25 16:59 HITS.49545114._035188.pool.root.1
[2026-04-25 17:00:52] -rw-r--r--. 1 boinc boinc       487 Apr 25 16:59 boinc_task_state.xml
[2026-04-25 17:00:52] -rw-------. 1 boinc boinc        95 Apr 25 17:00 pilot_heartbeat.json
[2026-04-25 17:00:52] -rw-------. 1 boinc boinc      1029 Apr 25 17:00 memory_monitor_summary.json
[2026-04-25 17:00:52] -rw-------. 1 boinc boinc    314971 Apr 25 17:00 log.49545114._035188.job.log.tgz.1
[2026-04-25 17:00:52] -rw-------. 1 boinc boinc      6374 Apr 25 17:00 heartbeat_new.json
[2026-04-25 17:00:52] -rw-------. 1 boinc boinc      6265 Apr 25 17:00 heartbeat.json
[2026-04-25 17:00:52] -rw-r--r--. 1 boinc boinc      8192 Apr 25 17:00 boinc_mmap_file
[2026-04-25 17:00:52] -rw-r--r--. 1 boinc boinc        27 Apr 25 17:00 wrapper_checkpoint.txt
[2026-04-25 17:00:52] -rw-------. 1 boinc boinc      4564 Apr 25 17:00 pilotlog.txt
[2026-04-25 17:00:52] -rw-------. 1 boinc boinc    160526 Apr 25 17:00 log.49545114._035188.job.log.1
[2026-04-25 17:00:52] -rw-------. 1 boinc boinc       357 Apr 25 17:00 output.list
[2026-04-25 17:00:52] -rw-r--r--. 1 boinc boinc       410 Apr 25 17:00 runtime_log
[2026-04-25 17:00:52] -rw-------. 1 boinc boinc    491520 Apr 25 17:00 result.tar.gz
[2026-04-25 17:00:52] -rw-r--r--. 1 boinc boinc      8846 Apr 25 17:00 runtime_log.err
[2026-04-25 17:00:52] -rw-------. 1 boinc boinc       656 Apr 25 17:00 aca6e5a77e29.diag
[2026-04-25 17:00:52] -rw-r--r--. 1 boinc boinc     21236 Apr 25 17:00 stderr.txt
[2026-04-25 17:00:52] HITS file was successfully produced:
[2026-04-25 17:00:52] -rw-------. 1 boinc boinc 186960570 Apr 25 16:59 shared/HITS.pool.root.1
[2026-04-25 17:00:52]  *** Contents of shared directory: ***
[2026-04-25 17:00:52] total 456240
[2026-04-25 17:00:52] -rw-r--r--. 2 boinc boinc 279008572 Apr 25 16:40 ATLAS.root_0
[2026-04-25 17:00:52] -rw-r--r--. 2 boinc boinc     15667 Apr 25 16:40 start_atlas.sh
[2026-04-25 17:00:52] -rw-r--r--. 2 boinc boinc    697428 Apr 25 16:40 input.tar.gz
[2026-04-25 17:00:52] -rw-------. 1 boinc boinc 186960570 Apr 25 16:59 HITS.pool.root.1
[2026-04-25 17:00:52] -rw-------. 1 boinc boinc    491520 Apr 25 17:00 result.tar.gz
17:00:54 (1477189): run_atlas exited; CPU time 11916.639889
17:00:54 (1477189): called boinc_finish(0)

</stderr_txt>
]]>

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