Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:46:13 (351774): wrapper (7.7.26015): starting
04:46:13 (351774): wrapper: running run_atlas (--nthreads 4)
[2026-04-26 04:46:13] Arguments: --nthreads 4
[2026-04-26 04:46:13] Threads: 4
[2026-04-26 04:46:13] Checking for CVMFS
[2026-04-26 04:46:13] No cvmfs_config command found, will try listing directly
[2026-04-26 04:46:13] CVMFS is ok
[2026-04-26 04:46:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-26 04:46:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-26 04:46:13] Further information can be found at the LHC@home message board.
[2026-04-26 04:46:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-26 04:46:13] Checking for apptainer binary...
[2026-04-26 04:46:13] which: no apptainer in ((null))
[2026-04-26 04:46:13] apptainer is not installed, using version from CVMFS
[2026-04-26 04:46:13] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-26 04:46:13] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot52/slots/3/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2026-04-26 04:46:13] apptainer works
[2026-04-26 04:46:13] Set ATHENA_PROC_NUMBER=4
[2026-04-26 04:46:13] Set ATHENA_CORE_NUMBER=4
[2026-04-26 04:46:13] Starting ATLAS job with PandaID=7105836441
[2026-04-26 04:46:13] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot52/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-26 06:49:51]  *** The last 200 lines of the pilot log: ***
[2026-04-26 06:49:51] 2026-04-26 04:48:49,805 | INFO     | preparing for final server update for job 7105836441 in state='finished'
[2026-04-26 06:49:51] 2026-04-26 04:48:49,805 | INFO     | reading metadata from: /var/lib/boinc/var/slot52/slots/3/PanDA_Pilot-7105836441/jobReport.json
[2026-04-26 06:49:51] 2026-04-26 04:48:49,807 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot52/slots/3/workernode_map.json
[2026-04-26 06:49:51] 2026-04-26 04:48:49,808 | INFO     | this job has now completed (state=finished)
[2026-04-26 06:49:51] 2026-04-26 04:48:49,808 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-26 06:49:51] 2026-04-26 04:48:49,808 | INFO     | log transfer has been attempted: DONE
[2026-04-26 06:49:51] 2026-04-26 04:48:49,808 | INFO     | job 7105836441 has finished - writing final server update
[2026-04-26 06:49:51] 2026-04-26 04:48:49,808 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3162254/.job.ad'
[2026-04-26 06:49:51] 2026-04-26 04:48:49,809 | INFO     | total number of processed events: 400 (read)
[2026-04-26 06:49:51] 2026-04-26 04:48:49,832 | INFO     | using path: /var/lib/boinc/var/slot52/slots/3/PanDA_Pilot-7105836441/memory_monitor_summary.json (trf name=prmon)
[2026-04-26 06:49:51] 2026-04-26 04:48:49,832 | INFO     | extracted standard info from prmon json
[2026-04-26 06:49:51] 2026-04-26 04:48:49,832 | INFO     | extracted standard memory fields from prmon json
[2026-04-26 06:49:51] 2026-04-26 04:48:49,833 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-26 06:49:51] 2026-04-26 04:48:49,833 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-26 06:49:51] 2026-04-26 04:48:49,835 | INFO     | fitting pss+swap vs Time
[2026-04-26 06:49:51] 2026-04-26 04:48:49,835 | INFO     | sum of square deviations: 535786790.0
[2026-04-26 06:49:51] 2026-04-26 04:48:49,836 | INFO     | sum of deviations: 10495124114.999998
[2026-04-26 06:49:51] 2026-04-26 04:48:49,836 | INFO     | mean x (centered): 0.0
[2026-04-26 06:49:51] 2026-04-26 04:48:49,836 | INFO     | mean y: 2309343.85
[2026-04-26 06:49:51] 2026-04-26 04:48:49,836 | INFO     | intersect: 2309343.85
[2026-04-26 06:49:51] 2026-04-26 04:48:49,836 | INFO     | chi2: 1.2573116071609072
[2026-04-26 06:49:51] 2026-04-26 04:48:49,837 | INFO     | sum of square deviations: 471562330.0
[2026-04-26 06:49:51] 2026-04-26 04:48:49,837 | INFO     | sum of deviations: 10092207464.0
[2026-04-26 06:49:51] 2026-04-26 04:48:49,837 | INFO     | mean x (centered): 0.0
[2026-04-26 06:49:51] 2026-04-26 04:48:49,837 | INFO     | mean y: 2308386.6347826086
[2026-04-26 06:49:51] 2026-04-26 04:48:49,837 | INFO     | intersect: 2308386.6347826086
[2026-04-26 06:49:51] 2026-04-26 04:48:49,838 | INFO     | chi2: 1.259260355325436
[2026-04-26 06:49:51] 2026-04-26 04:48:49,838 | INFO     | current chi2=1.259260355325436 (change=-0.15499325333751093 %)
[2026-04-26 06:49:51] 2026-04-26 04:48:49,840 | INFO     | right removable region: 114
[2026-04-26 06:49:51] 2026-04-26 04:48:49,840 | INFO     | sum of square deviations: 471562330.0
[2026-04-26 06:49:51] 2026-04-26 04:48:49,840 | INFO     | sum of deviations: -3216795960.000001
[2026-04-26 06:49:51] 2026-04-26 04:48:49,841 | INFO     | mean x (centered): 0.0
[2026-04-26 06:49:51] 2026-04-26 04:48:49,841 | INFO     | mean y: 2341119.7130434783
[2026-04-26 06:49:51] 2026-04-26 04:48:49,841 | INFO     | intersect: 2341119.7130434783
[2026-04-26 06:49:51] 2026-04-26 04:48:49,841 | INFO     | chi2: 0.006037601690268085
[2026-04-26 06:49:51] 2026-04-26 04:48:49,841 | INFO     | current chi2=0.006037601690268085 (change=99.51980068776255 %)
[2026-04-26 06:49:51] 2026-04-26 04:48:49,841 | INFO     | sum of square deviations: 412686807.5
[2026-04-26 06:49:51] 2026-04-26 04:48:49,842 | INFO     | sum of deviations: -2687991565.4999995
[2026-04-26 06:49:51] 2026-04-26 04:48:49,842 | INFO     | mean x (centered): 0.0
[2026-04-26 06:49:51] 2026-04-26 04:48:49,842 | INFO     | mean y: 2339741.609090909
[2026-04-26 06:49:51] 2026-04-26 04:48:49,842 | INFO     | intersect: 2339741.609090909
[2026-04-26 06:49:51] 2026-04-26 04:48:49,842 | INFO     | chi2: 0.0059283524140352544
[2026-04-26 06:49:51] 2026-04-26 04:48:49,842 | INFO     | current chi2=0.0059283524140352544 (change=1.8094813443710223 %)
[2026-04-26 06:49:51] 2026-04-26 04:48:49,843 | INFO     | left removable region: 10
[2026-04-26 06:49:51] 2026-04-26 04:48:49,843 | INFO     | sum of square deviations: 348769330.0
[2026-04-26 06:49:51] 2026-04-26 04:48:49,843 | INFO     | sum of deviations: -2519223902.5
[2026-04-26 06:49:51] 2026-04-26 04:48:49,843 | INFO     | mean x (centered): 0.0
[2026-04-26 06:49:51] 2026-04-26 04:48:49,843 | INFO     | mean y: 2340225.375
[2026-04-26 06:49:51] 2026-04-26 04:48:49,844 | INFO     | intersect: 2340225.375
[2026-04-26 06:49:51] 2026-04-26 04:48:49,844 | INFO     | chi2: 0.005721330982526876
[2026-04-26 06:49:51] 2026-04-26 04:48:49,844 | INFO     | current memory leak: -7.22 B/s (using 104 data points, chi2=0.01)
[2026-04-26 06:49:51] 2026-04-26 04:48:49,844 | INFO     | could have reported an average CPU frequency of 2739 MHz (8 samples)
[2026-04-26 06:49:51] 2026-04-26 04:48:49,844 | INFO     | ..............................
[2026-04-26 06:49:51] 2026-04-26 04:48:49,844 | INFO     | . Timing measurements:
[2026-04-26 06:49:51] 2026-04-26 04:48:49,844 | INFO     | . get job = 0 s
[2026-04-26 06:49:51] 2026-04-26 04:48:49,845 | INFO     | . initial setup = 7 s
[2026-04-26 06:49:51] 2026-04-26 04:48:49,845 | INFO     | . payload setup = 13 s
[2026-04-26 06:49:51] 2026-04-26 04:48:49,845 | INFO     | . stage-in = 0 s
[2026-04-26 06:49:51] 2026-04-26 04:48:49,845 | INFO     | . payload execution = 7301 s
[2026-04-26 06:49:51] 2026-04-26 04:48:49,845 | INFO     | . stage-out = 1 s
[2026-04-26 06:49:51] 2026-04-26 04:48:49,845 | INFO     | . log creation = 0 s
[2026-04-26 06:49:51] 2026-04-26 04:48:49,845 | INFO     | ..............................
[2026-04-26 06:49:51] 2026-04-26 04:48:49,931 | INFO     | 
[2026-04-26 06:49:51] 2026-04-26 04:48:49,932 | INFO     | job summary report
[2026-04-26 06:49:51] 2026-04-26 04:48:49,932 | INFO     | --------------------------------------------------
[2026-04-26 06:49:51] 2026-04-26 04:48:49,932 | INFO     | PanDA job id: 7105836441
[2026-04-26 06:49:51] 2026-04-26 04:48:49,932 | INFO     | task id: 49263200
[2026-04-26 06:49:51] 2026-04-26 04:48:49,932 | INFO     | errors: (none)
[2026-04-26 06:49:51] 2026-04-26 04:48:49,932 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-26 06:49:51] 2026-04-26 04:48:49,932 | INFO     | pilot state: finished 
[2026-04-26 06:49:51] 2026-04-26 04:48:49,933 | INFO     | transexitcode: 0
[2026-04-26 06:49:51] 2026-04-26 04:48:49,933 | INFO     | exeerrorcode: 0
[2026-04-26 06:49:51] 2026-04-26 04:48:49,933 | INFO     | exeerrordiag: 
[2026-04-26 06:49:51] 2026-04-26 04:48:49,933 | INFO     | exitcode: 0
[2026-04-26 06:49:51] 2026-04-26 04:48:49,933 | INFO     | exitmsg: OK
[2026-04-26 06:49:51] 2026-04-26 04:48:49,933 | INFO     | cpuconsumptiontime: 27940 s
[2026-04-26 06:49:51] 2026-04-26 04:48:49,933 | INFO     | nevents: 400
[2026-04-26 06:49:51] 2026-04-26 04:48:49,933 | INFO     | neventsw: 0
[2026-04-26 06:49:51] 2026-04-26 04:48:49,933 | INFO     | pid: 361169
[2026-04-26 06:49:51] 2026-04-26 04:48:49,933 | INFO     | pgrp: 361169
[2026-04-26 06:49:51] 2026-04-26 04:48:49,933 | INFO     | corecount: 4
[2026-04-26 06:49:51] 2026-04-26 04:48:49,933 | INFO     | event service: False
[2026-04-26 06:49:51] 2026-04-26 04:48:49,934 | INFO     | sizes: {0: 2274567, 1: 2276452, 12: 2276452, 7318: 2303847, 7319: 2312867, 7322: 2312923, 7325: 2313245}
[2026-04-26 06:49:51] 2026-04-26 04:48:49,934 | INFO     | --------------------------------------------------
[2026-04-26 06:49:51] 2026-04-26 04:48:49,934 | INFO     | 
[2026-04-26 06:49:51] 2026-04-26 04:48:49,934 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot52/slots/3
[2026-04-26 06:49:51] 2026-04-26 04:48:49,966 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-26 06:49:51] 2026-04-26 04:48:49,966 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-26 06:49:51] 2026-04-26 04:48:49,967 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-26 06:49:51] 2026-04-26 04:48:49,967 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-26 06:49:51] 2026-04-26 04:48:49,967 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-26 06:49:51] 2026-04-26 04:48:49,967 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-26 06:49:51] 2026-04-26 04:48:49,967 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-26 06:49:51] 2026-04-26 04:48:49,967 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-26 06:49:51] 2026-04-26 04:48:49,967 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-26 06:49:51] 2026-04-26 04:48:49,967 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-26 06:49:51] 2026-04-26 04:48:49,967 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-26 06:49:51] 2026-04-26 04:48:49,967 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-26 06:49:51] 2026-04-26 04:48:49,967 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-26 06:49:51] 2026-04-26 04:48:49,968 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-26 06:49:51] 2026-04-26 04:48:49,968 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-26 06:49:51] 2026-04-26 04:48:49,968 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-26 06:49:51] 2026-04-26 04:48:49,968 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-26 06:49:51] 2026-04-26 04:48:49,968 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-26 06:49:51] 2026-04-26 04:48:49,968 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-26 06:49:51] 2026-04-26 04:48:49,968 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-26 06:49:51] 2026-04-26 04:48:49,968 | INFO     | job 7105836441 has completed (purged errors)
[2026-04-26 06:49:51] 2026-04-26 04:48:49,968 | INFO     | overall cleanup function is called
[2026-04-26 06:49:51] 2026-04-26 04:48:50,977 | INFO     | --- collectZombieJob: --- 10, [361169]
[2026-04-26 06:49:51] 2026-04-26 04:48:50,977 | INFO     | zombie collector waiting for pid 361169
[2026-04-26 06:49:51] 2026-04-26 04:48:50,978 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-26 06:49:51] 2026-04-26 04:48:50,978 | INFO     | collected zombie processes
[2026-04-26 06:49:51] 2026-04-26 04:48:50,978 | INFO     | will attempt to kill all subprocesses of pid=361169
[2026-04-26 06:49:51] 2026-04-26 04:48:50,980 | INFO     | PID=355852 has CPU usage=20.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-26 06:49:51] 2026-04-26 04:48:50,981 | INFO     | .. there are 14 such processes running
[2026-04-26 06:49:51] 2026-04-26 04:48:51,505 | INFO     | process IDs to be killed: [361169] (in reverse order)
[2026-04-26 06:49:51] 2026-04-26 04:48:51,770 | WARNING  | found no corresponding commands to process id(s)
[2026-04-26 06:49:51] 2026-04-26 04:48:51,770 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-26 06:49:51] 2026-04-26 04:48:51,797 | INFO     | did not find any defunct processes belonging to 361169
[2026-04-26 06:49:51] 2026-04-26 04:48:51,819 | INFO     | did not find any defunct processes belonging to 361169
[2026-04-26 06:49:51] 2026-04-26 04:48:51,819 | INFO     | Ready for new job
[2026-04-26 06:49:51] 2026-04-26 04:48:51,821 | INFO     | ***************************************
[2026-04-26 06:49:51] 2026-04-26 04:48:51,821 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-26 06:49:51] 2026-04-26 04:48:51,821 | INFO     | ***************************************
[2026-04-26 06:49:51] 2026-04-26 04:48:51,821 | INFO     | 
[2026-04-26 06:49:51] 2026-04-26 04:48:51,829 | INFO     | architecture information:
[2026-04-26 06:49:51] 2026-04-26 04:48:51,830 | INFO     | executing command: cat /etc/os-release
[2026-04-26 06:49:51] 2026-04-26 04:48:51,855 | INFO     | cat /etc/os-release:
[2026-04-26 06:49:51] NAME="CentOS Linux"
[2026-04-26 06:49:51] VERSION="7 (Core)"
[2026-04-26 06:49:51] ID="centos"
[2026-04-26 06:49:51] ID_LIKE="rhel fedora"
[2026-04-26 06:49:51] VERSION_ID="7"
[2026-04-26 06:49:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-26 06:49:51] ANSI_COLOR="0;31"
[2026-04-26 06:49:51] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-26 06:49:51] HOME_URL="https://www.centos.org/"
[2026-04-26 06:49:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-26 06:49:51] 
[2026-04-26 06:49:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-26 06:49:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-26 06:49:51] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-26 06:49:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-26 06:49:51] 
[2026-04-26 06:49:51] 2026-04-26 04:48:51,856 | INFO     | ***************************************
[2026-04-26 06:49:51] 2026-04-26 04:48:52,359 | INFO     | executing command: df -mP /var/lib/boinc/var/slot52/slots/3
[2026-04-26 06:49:51] 2026-04-26 04:48:52,382 | INFO     | sufficient remaining disk space (251921432576 B)
[2026-04-26 06:49:51] 2026-04-26 04:48:52,382 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-26 06:49:51] 2026-04-26 04:48:52,382 | INFO     | current server update state: UPDATING_FINAL
[2026-04-26 06:49:51] 2026-04-26 04:48:52,382 | INFO     | update_server=False
[2026-04-26 06:49:51] 2026-04-26 04:48:52,382 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-26 06:49:51] 2026-04-26 04:48:52,388 | INFO     | all payload control threads have been joined
[2026-04-26 06:49:51] 2026-04-26 04:48:52,434 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-26 06:49:51] 2026-04-26 04:48:52,659 | INFO     | all job control threads have been joined
[2026-04-26 06:49:51] 2026-04-26 04:48:52,722 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-26 06:49:51] 2026-04-26 04:48:52,722 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-26 06:49:51] 2026-04-26 04:48:52,723 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-26 06:49:51] 2026-04-26 04:48:52,723 | INFO     | will abort loop
[2026-04-26 06:49:51] 2026-04-26 04:48:52,839 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-26 06:49:51] 2026-04-26 04:48:52,990 | INFO     | all data control threads have been joined
[2026-04-26 06:49:51] 2026-04-26 04:48:53,388 | INFO     | [job] retrieve thread has finished
[2026-04-26 06:49:51] 2026-04-26 04:48:53,394 | INFO     | [payload] control thread has finished
[2026-04-26 06:49:51] 2026-04-26 04:48:53,539 | INFO     | [job] create_data_payload thread has finished
[2026-04-26 06:49:51] 2026-04-26 04:48:53,665 | INFO     | [job] control thread has finished
[2026-04-26 06:49:51] 2026-04-26 04:48:53,683 | INFO     | [payload] validate_pre thread has finished
[2026-04-26 06:49:51] 2026-04-26 04:48:53,728 | INFO     | [job] job monitor thread has finished
[2026-04-26 06:49:51] 2026-04-26 04:48:53,823 | INFO     | [data] copytool_in thread has finished
[2026-04-26 06:49:51] 2026-04-26 04:48:53,915 | INFO     | [payload] validate_post thread has finished
[2026-04-26 06:49:51] 2026-04-26 04:48:53,992 | INFO     | [data] control thread has finished
[2026-04-26 06:49:51] 2026-04-26 04:48:54,237 | INFO     | [payload] execute_payloads thread has finished
[2026-04-26 06:49:51] 2026-04-26 04:48:54,437 | INFO     | [data] copytool_out thread has finished
[2026-04-26 06:49:51] 2026-04-26 04:48:54,788 | INFO     | [payload] failed_post thread has finished
[2026-04-26 06:49:51] 2026-04-26 04:48:54,800 | INFO     | [job] validate thread has finished
[2026-04-26 06:49:51] 2026-04-26 04:48:54,863 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-26 06:49:51] 2026-04-26 04:48:54,942 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-26 06:49:51] 2026-04-26 04:48:55,948 | INFO     | [job] queue monitor thread has finished
[2026-04-26 06:49:51] 2026-04-26 04:48:56,845 | INFO     | [data] queue_monitor thread has finished
[2026-04-26 06:49:51] 2026-04-26 04:49:23,834 | INFO     | PID=355852 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-26 06:49:51] 2026-04-26 04:49:23,834 | INFO     | .. there are 14 such processes running
[2026-04-26 06:49:51] 2026-04-26 04:49:23,836 | INFO     | found 0 job(s) in 20 queues
[2026-04-26 06:49:51] 2026-04-26 04:49:23,836 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-26 06:49:51] 2026-04-26 04:49:23,836 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-26 06:49:51] 2026-04-26 04:49:44,172 | INFO     | [monitor] cgroup control has ended
[2026-04-26 06:49:51] 2026-04-26 04:49:46,161 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23137893267264)>', '<ExcThread(monitor, started 23137590699776)>']
[2026-04-26 06:49:51] 2026-04-26 04:49:46,944 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-26 06:49:51] 2026-04-26 04:49:46,944 | INFO     | [monitor] control thread has ended
[2026-04-26 06:49:51] 2026-04-26 04:49:51,187 | INFO     | all workflow threads have been joined
[2026-04-26 06:49:51] 2026-04-26 04:49:51,187 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-26 06:49:51] 2026-04-26 04:49:51,188 | INFO     | traces error code: 0
[2026-04-26 06:49:51] 2026-04-26 04:49:51,188 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-26 06:49:51] 2026-04-26 04:49:51,376 [wrapper] ==== pilot stdout END ====
[2026-04-26 06:49:51] 2026-04-26 04:49:51,381 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-26 06:49:51] 2026-04-26 04:49:51,384 [wrapper] pilotpid: 355852
[2026-04-26 06:49:51] 2026-04-26 04:49:51,388 [wrapper] Pilot exit status: 0
[2026-04-26 06:49:51] 2026-04-26 04:49:51,403 [wrapper] pandaids: 7105836441
[2026-04-26 06:49:51] 2026-04-26 04:49:51,578 [wrapper] cleanup supervisor_pilot  642305 355853
[2026-04-26 06:49:51] 2026-04-26 04:49:51,582 [wrapper] Test setup, not cleaning
[2026-04-26 06:49:51] 2026-04-26 04:49:51,586 [wrapper] apfmon messages muted
[2026-04-26 06:49:51] 2026-04-26 04:49:51,590 [wrapper] ==== wrapper stdout END ====
[2026-04-26 06:49:51] 2026-04-26 04:49:51,594 [wrapper] ==== wrapper stderr END ====
[2026-04-26 06:49:51]  *** Error codes and diagnostics ***
[2026-04-26 06:49:51]     "exeErrorCode": 0,
[2026-04-26 06:49:51]     "pilotErrorCode": 0,
[2026-04-26 06:49:51]  *** Listing of results directory ***
[2026-04-26 06:49:51] total 415288
[2026-04-26 06:49:51] -rw-r--r--. 1 boinc boinc    683926 Apr 25 12:46 pilot3.tar.gz
[2026-04-26 06:49:51] -rw-r--r--. 1 boinc boinc      5631 Apr 25 13:40 queuedata.json
[2026-04-26 06:49:51] -rwx------. 1 boinc boinc     36322 Apr 25 13:40 runpilot2-wrapper.sh
[2026-04-26 06:49:51] -rw-r--r--. 1 boinc boinc       100 Apr 26 04:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-26 06:49:51] -rwxr-xr-x. 1 boinc boinc      7986 Apr 26 04:46 run_atlas
[2026-04-26 06:49:51] -rw-r--r--. 1 boinc boinc       105 Apr 26 04:46 job.xml
[2026-04-26 06:49:51] -rw-r--r--. 2 boinc boinc 224650636 Apr 26 04:46 EVNT.49263198._001671.pool.root.1
[2026-04-26 06:49:51] -rw-r--r--. 1 boinc boinc      6541 Apr 26 04:46 init_data.xml
[2026-04-26 06:49:51] -rw-r--r--. 2 boinc boinc     15667 Apr 26 04:46 start_atlas.sh
[2026-04-26 06:49:51] drwxrwx--x. 2 boinc boinc      4096 Apr 26 04:46 shared
[2026-04-26 06:49:51] -rw-r--r--. 2 boinc boinc    697431 Apr 26 04:46 input.tar.gz
[2026-04-26 06:49:51] -rw-r--r--. 1 boinc boinc         0 Apr 26 04:46 boinc_lockfile
[2026-04-26 06:49:51] -rw-r--r--. 1 boinc boinc      2577 Apr 26 04:46 pandaJob.out
[2026-04-26 06:49:51] -rw-------. 1 boinc boinc    997541 Apr 26 04:46 agis_schedconf.cvmfs.json
[2026-04-26 06:49:51] -rw-------. 1 boinc boinc   1509089 Apr 26 04:46 agis_ddmendpoints.agis.ALL.json
[2026-04-26 06:49:51] -rw-------. 1 boinc boinc       443 Apr 26 04:46 workernode_map.json
[2026-04-26 06:49:51] drwx------. 5 boinc boinc      4096 Apr 26 04:46 pilot3
[2026-04-26 06:49:51] -rw-------. 1 boinc boinc 194541253 Apr 26 06:48 HITS.49263200._076900.pool.root.1
[2026-04-26 06:49:51] -rw-r--r--. 1 boinc boinc       488 Apr 26 06:48 boinc_task_state.xml
[2026-04-26 06:49:51] -rw-------. 1 boinc boinc      1031 Apr 26 06:48 memory_monitor_summary.json
[2026-04-26 06:49:51] -rw-------. 1 boinc boinc    267263 Apr 26 06:48 log.49263200._076900.job.log.tgz.1
[2026-04-26 06:49:51] -rw-------. 1 boinc boinc      6377 Apr 26 06:48 heartbeat_new.json
[2026-04-26 06:49:51] -rw-------. 1 boinc boinc      6268 Apr 26 06:48 heartbeat.json
[2026-04-26 06:49:51] -rw-------. 1 boinc boinc        95 Apr 26 06:49 pilot_heartbeat.json
[2026-04-26 06:49:51] -rw-r--r--. 1 boinc boinc      8192 Apr 26 06:49 boinc_mmap_file
[2026-04-26 06:49:51] -rw-r--r--. 1 boinc boinc        27 Apr 26 06:49 wrapper_checkpoint.txt
[2026-04-26 06:49:51] -rw-------. 1 boinc boinc      5018 Apr 26 06:49 pilotlog.txt
[2026-04-26 06:49:51] -rw-------. 1 boinc boinc    693255 Apr 26 06:49 log.49263200._076900.job.log.1
[2026-04-26 06:49:51] -rw-------. 1 boinc boinc       357 Apr 26 06:49 output.list
[2026-04-26 06:49:51] -rw-r--r--. 1 boinc boinc       410 Apr 26 06:49 runtime_log
[2026-04-26 06:49:51] -rw-------. 1 boinc boinc    983040 Apr 26 06:49 result.tar.gz
[2026-04-26 06:49:51] -rw-r--r--. 1 boinc boinc      8827 Apr 26 06:49 runtime_log.err
[2026-04-26 06:49:51] -rw-------. 1 boinc boinc       662 Apr 26 06:49 a84a0a4f3b45.diag
[2026-04-26 06:49:51] -rw-r--r--. 1 boinc boinc     21129 Apr 26 06:49 stderr.txt
[2026-04-26 06:49:51] HITS file was successfully produced:
[2026-04-26 06:49:51] -rw-------. 1 boinc boinc 194541253 Apr 26 06:48 shared/HITS.pool.root.1
[2026-04-26 06:49:51]  *** Contents of shared directory: ***
[2026-04-26 06:49:51] total 411040
[2026-04-26 06:49:51] -rw-r--r--. 2 boinc boinc 224650636 Apr 26 04:46 ATLAS.root_0
[2026-04-26 06:49:51] -rw-r--r--. 2 boinc boinc     15667 Apr 26 04:46 start_atlas.sh
[2026-04-26 06:49:51] -rw-r--r--. 2 boinc boinc    697431 Apr 26 04:46 input.tar.gz
[2026-04-26 06:49:51] -rw-------. 1 boinc boinc 194541253 Apr 26 06:48 HITS.pool.root.1
[2026-04-26 06:49:51] -rw-------. 1 boinc boinc    983040 Apr 26 06:49 result.tar.gz
06:49:53 (351774): run_atlas exited; CPU time 28282.227821
06:49:53 (351774): called boinc_finish(0)

</stderr_txt>
]]>

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