Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:23:31 (915657): wrapper (7.7.26015): starting
15:23:31 (915657): wrapper: running run_atlas (--nthreads 4)
[2026-04-25 15:23:31] Arguments: --nthreads 4
[2026-04-25 15:23:31] Threads: 4
[2026-04-25 15:23:31] Checking for CVMFS
[2026-04-25 15:23:31] No cvmfs_config command found, will try listing directly
[2026-04-25 15:23:31] CVMFS is ok
[2026-04-25 15:23:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-25 15:23:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-25 15:23:31] Further information can be found at the LHC@home message board.
[2026-04-25 15:23:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-25 15:23:31] Checking for apptainer binary...
[2026-04-25 15:23:31] which: no apptainer in ((null))
[2026-04-25 15:23:31] apptainer is not installed, using version from CVMFS
[2026-04-25 15:23:31] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-25 15:23:31] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut07.grid.cesnet.cz
[2026-04-25 15:23:31] apptainer works
[2026-04-25 15:23:31] Set ATHENA_PROC_NUMBER=4
[2026-04-25 15:23:31] Set ATHENA_CORE_NUMBER=4
[2026-04-25 15:23:31] Starting ATLAS job with PandaID=7105796263
[2026-04-25 15:23:31] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-25 17:37:32]  *** The last 200 lines of the pilot log: ***
[2026-04-25 17:37:32] 2026-04-25 15:36:00,182 | INFO     | maximum number of monitored processes: 6
[2026-04-25 17:37:32] 2026-04-25 15:36:00,644 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-25 17:37:32] 2026-04-25 15:36:00,771 | INFO     | job 7105796263 has state=finished
[2026-04-25 17:37:32] 2026-04-25 15:36:00,772 | INFO     | preparing for final server update for job 7105796263 in state='finished'
[2026-04-25 17:37:32] 2026-04-25 15:36:00,772 | INFO     | reading metadata from: /var/lib/boinc/var/slot40/slots/0/PanDA_Pilot-7105796263/jobReport.json
[2026-04-25 17:37:32] 2026-04-25 15:36:00,775 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot40/slots/0/workernode_map.json
[2026-04-25 17:37:32] 2026-04-25 15:36:00,776 | INFO     | this job has now completed (state=finished)
[2026-04-25 17:37:32] 2026-04-25 15:36:00,776 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-25 17:37:32] 2026-04-25 15:36:00,776 | INFO     | log transfer has been attempted: DONE
[2026-04-25 17:37:32] 2026-04-25 15:36:00,776 | INFO     | job 7105796263 has finished - writing final server update
[2026-04-25 17:37:32] 2026-04-25 15:36:00,776 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3887370/.job.ad'
[2026-04-25 17:37:32] 2026-04-25 15:36:00,777 | INFO     | total number of processed events: 400 (read)
[2026-04-25 17:37:32] 2026-04-25 15:36:00,790 | INFO     | using path: /var/lib/boinc/var/slot40/slots/0/PanDA_Pilot-7105796263/memory_monitor_summary.json (trf name=prmon)
[2026-04-25 17:37:32] 2026-04-25 15:36:00,791 | INFO     | extracted standard info from prmon json
[2026-04-25 17:37:32] 2026-04-25 15:36:00,791 | INFO     | extracted standard memory fields from prmon json
[2026-04-25 17:37:32] 2026-04-25 15:36:00,791 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-25 17:37:32] 2026-04-25 15:36:00,791 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-25 17:37:32] 2026-04-25 15:36:00,794 | INFO     | fitting pss+swap vs Time
[2026-04-25 17:37:32] 2026-04-25 15:36:00,795 | INFO     | sum of square deviations: 681212772.5
[2026-04-25 17:37:32] 2026-04-25 15:36:00,795 | INFO     | sum of deviations: 1494934045.5000002
[2026-04-25 17:37:32] 2026-04-25 15:36:00,795 | INFO     | mean x (centered): 0.0
[2026-04-25 17:37:32] 2026-04-25 15:36:00,795 | INFO     | mean y: 2352065.5153846154
[2026-04-25 17:37:32] 2026-04-25 15:36:00,796 | INFO     | intersect: 2352065.5153846154
[2026-04-25 17:37:32] 2026-04-25 15:36:00,796 | INFO     | chi2: 1.1288516656288996
[2026-04-25 17:37:32] 2026-04-25 15:36:00,796 | INFO     | sum of square deviations: 605592750.0
[2026-04-25 17:37:32] 2026-04-25 15:36:00,797 | INFO     | sum of deviations: 1692526861.9999993
[2026-04-25 17:37:32] 2026-04-25 15:36:00,797 | INFO     | mean x (centered): 0.0
[2026-04-25 17:37:32] 2026-04-25 15:36:00,797 | INFO     | mean y: 2352464.16
[2026-04-25 17:37:32] 2026-04-25 15:36:00,797 | INFO     | intersect: 2352464.16
[2026-04-25 17:37:32] 2026-04-25 15:36:00,797 | INFO     | chi2: 1.1298956362440846
[2026-04-25 17:37:32] 2026-04-25 15:36:00,798 | INFO     | current chi2=1.1298956362440846 (change=-0.09248076137650982 %)
[2026-04-25 17:37:32] 2026-04-25 15:36:00,798 | INFO     | right removable region: 124
[2026-04-25 17:37:32] 2026-04-25 15:36:00,798 | INFO     | sum of square deviations: 605592750.0
[2026-04-25 17:37:32] 2026-04-25 15:36:00,799 | INFO     | sum of deviations: -10716151759.0
[2026-04-25 17:37:32] 2026-04-25 15:36:00,799 | INFO     | mean x (centered): 0.0
[2026-04-25 17:37:32] 2026-04-25 15:36:00,799 | INFO     | mean y: 2376063.712
[2026-04-25 17:37:32] 2026-04-25 15:36:00,799 | INFO     | intersect: 2376063.712
[2026-04-25 17:37:32] 2026-04-25 15:36:00,799 | INFO     | chi2: 0.02993016978370898
[2026-04-25 17:37:32] 2026-04-25 15:36:00,800 | INFO     | current chi2=0.02993016978370898 (change=97.34861800757194 %)
[2026-04-25 17:37:32] 2026-04-25 15:36:00,800 | INFO     | sum of square deviations: 535786790.0
[2026-04-25 17:37:32] 2026-04-25 15:36:00,800 | INFO     | sum of deviations: -9683960968.499998
[2026-04-25 17:37:32] 2026-04-25 15:36:00,801 | INFO     | mean x (centered): 0.0
[2026-04-25 17:37:32] 2026-04-25 15:36:00,801 | INFO     | mean y: 2373799.6083333334
[2026-04-25 17:37:32] 2026-04-25 15:36:00,801 | INFO     | intersect: 2373799.6083333334
[2026-04-25 17:37:32] 2026-04-25 15:36:00,801 | INFO     | chi2: 0.02973702237727615
[2026-04-25 17:37:32] 2026-04-25 15:36:00,801 | INFO     | current chi2=0.02973702237727615 (change=0.64532679843988 %)
[2026-04-25 17:37:32] 2026-04-25 15:36:00,801 | INFO     | left removable region: 10
[2026-04-25 17:37:32] 2026-04-25 15:36:00,801 | INFO     | sum of square deviations: 459366752.5
[2026-04-25 17:37:32] 2026-04-25 15:36:00,802 | INFO     | sum of deviations: -8989730521.5
[2026-04-25 17:37:32] 2026-04-25 15:36:00,802 | INFO     | mean x (centered): 0.0
[2026-04-25 17:37:32] 2026-04-25 15:36:00,802 | INFO     | mean y: 2375463.236842105
[2026-04-25 17:37:32] 2026-04-25 15:36:00,802 | INFO     | intersect: 2375463.236842105
[2026-04-25 17:37:32] 2026-04-25 15:36:00,802 | INFO     | chi2: 0.028482954320734014
[2026-04-25 17:37:32] 2026-04-25 15:36:00,803 | INFO     | current memory leak: -19.57 B/s (using 114 data points, chi2=0.03)
[2026-04-25 17:37:32] 2026-04-25 15:36:00,803 | INFO     | could have reported an average CPU frequency of 3000 MHz (8 samples)
[2026-04-25 17:37:32] 2026-04-25 15:36:00,803 | INFO     | ..............................
[2026-04-25 17:37:32] 2026-04-25 15:36:00,804 | INFO     | . Timing measurements:
[2026-04-25 17:37:32] 2026-04-25 15:36:00,804 | INFO     | . get job = 0 s
[2026-04-25 17:37:32] 2026-04-25 15:36:00,804 | INFO     | . initial setup = 4 s
[2026-04-25 17:37:32] 2026-04-25 15:36:00,804 | INFO     | . payload setup = 8 s
[2026-04-25 17:37:32] 2026-04-25 15:36:00,804 | INFO     | . stage-in = 0 s
[2026-04-25 17:37:32] 2026-04-25 15:36:00,804 | INFO     | . payload execution = 7911 s
[2026-04-25 17:37:32] 2026-04-25 15:36:00,804 | INFO     | . stage-out = 0 s
[2026-04-25 17:37:32] 2026-04-25 15:36:00,804 | INFO     | . log creation = 0 s
[2026-04-25 17:37:32] 2026-04-25 15:36:00,804 | INFO     | ..............................
[2026-04-25 17:37:32] 2026-04-25 15:36:01,025 | INFO     | 
[2026-04-25 17:37:32] 2026-04-25 15:36:01,026 | INFO     | job summary report
[2026-04-25 17:37:32] 2026-04-25 15:36:01,026 | INFO     | --------------------------------------------------
[2026-04-25 17:37:32] 2026-04-25 15:36:01,026 | INFO     | PanDA job id: 7105796263
[2026-04-25 17:37:32] 2026-04-25 15:36:01,026 | INFO     | task id: 49263191
[2026-04-25 17:37:32] 2026-04-25 15:36:01,026 | INFO     | errors: (none)
[2026-04-25 17:37:32] 2026-04-25 15:36:01,026 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-25 17:37:32] 2026-04-25 15:36:01,026 | INFO     | pilot state: finished 
[2026-04-25 17:37:32] 2026-04-25 15:36:01,026 | INFO     | transexitcode: 0
[2026-04-25 17:37:32] 2026-04-25 15:36:01,026 | INFO     | exeerrorcode: 0
[2026-04-25 17:37:32] 2026-04-25 15:36:01,027 | INFO     | exeerrordiag: 
[2026-04-25 17:37:32] 2026-04-25 15:36:01,027 | INFO     | exitcode: 0
[2026-04-25 17:37:32] 2026-04-25 15:36:01,027 | INFO     | exitmsg: OK
[2026-04-25 17:37:32] 2026-04-25 15:36:01,027 | INFO     | cpuconsumptiontime: 30581 s
[2026-04-25 17:37:32] 2026-04-25 15:36:01,027 | INFO     | nevents: 400
[2026-04-25 17:37:32] 2026-04-25 15:36:01,027 | INFO     | neventsw: 0
[2026-04-25 17:37:32] 2026-04-25 15:36:01,027 | INFO     | pid: 924457
[2026-04-25 17:37:32] 2026-04-25 15:36:01,027 | INFO     | pgrp: 924457
[2026-04-25 17:37:32] 2026-04-25 15:36:01,027 | INFO     | corecount: 4
[2026-04-25 17:37:32] 2026-04-25 15:36:01,027 | INFO     | event service: False
[2026-04-25 17:37:32] 2026-04-25 15:36:01,027 | INFO     | sizes: {0: 2274618, 1: 2276447, 11: 2276447, 7924: 2304286, 7925: 2313306, 7926: 2313684}
[2026-04-25 17:37:32] 2026-04-25 15:36:01,027 | INFO     | --------------------------------------------------
[2026-04-25 17:37:32] 2026-04-25 15:36:01,027 | INFO     | 
[2026-04-25 17:37:32] 2026-04-25 15:36:01,028 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot40/slots/0
[2026-04-25 17:37:32] 2026-04-25 15:36:01,050 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-25 17:37:32] 2026-04-25 15:36:01,050 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-25 17:37:32] 2026-04-25 15:36:01,050 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-25 17:37:32] 2026-04-25 15:36:01,050 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-25 17:37:32] 2026-04-25 15:36:01,050 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-25 17:37:32] 2026-04-25 15:36:01,050 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-25 17:37:32] 2026-04-25 15:36:01,050 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-25 17:37:32] 2026-04-25 15:36:01,051 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-25 17:37:32] 2026-04-25 15:36:01,051 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-25 17:37:32] 2026-04-25 15:36:01,051 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-25 17:37:32] 2026-04-25 15:36:01,051 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-25 17:37:32] 2026-04-25 15:36:01,051 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-25 17:37:32] 2026-04-25 15:36:01,051 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-25 17:37:32] 2026-04-25 15:36:01,051 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-25 17:37:32] 2026-04-25 15:36:01,051 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-25 17:37:32] 2026-04-25 15:36:01,051 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-25 17:37:32] 2026-04-25 15:36:01,052 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-25 17:37:32] 2026-04-25 15:36:01,052 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-25 17:37:32] 2026-04-25 15:36:01,052 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-25 17:37:32] 2026-04-25 15:36:01,052 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-25 17:37:32] 2026-04-25 15:36:01,052 | INFO     | job 7105796263 has completed (purged errors)
[2026-04-25 17:37:32] 2026-04-25 15:36:01,052 | INFO     | overall cleanup function is called
[2026-04-25 17:37:32] 2026-04-25 15:36:02,060 | INFO     | --- collectZombieJob: --- 10, [924457]
[2026-04-25 17:37:32] 2026-04-25 15:36:02,060 | INFO     | zombie collector waiting for pid 924457
[2026-04-25 17:37:32] 2026-04-25 15:36:02,060 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-25 17:37:32] 2026-04-25 15:36:02,060 | INFO     | collected zombie processes
[2026-04-25 17:37:32] 2026-04-25 15:36:02,060 | INFO     | will attempt to kill all subprocesses of pid=924457
[2026-04-25 17:37:32] 2026-04-25 15:36:02,345 | INFO     | process IDs to be killed: [924457] (in reverse order)
[2026-04-25 17:37:32] 2026-04-25 15:36:02,457 | WARNING  | found no corresponding commands to process id(s)
[2026-04-25 17:37:32] 2026-04-25 15:36:02,457 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-25 17:37:32] 2026-04-25 15:36:02,469 | INFO     | did not find any defunct processes belonging to 924457
[2026-04-25 17:37:32] 2026-04-25 15:36:02,480 | INFO     | did not find any defunct processes belonging to 924457
[2026-04-25 17:37:32] 2026-04-25 15:36:02,480 | INFO     | Ready for new job
[2026-04-25 17:37:32] 2026-04-25 15:36:02,482 | INFO     | ***************************************
[2026-04-25 17:37:32] 2026-04-25 15:36:02,482 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-25 17:37:32] 2026-04-25 15:36:02,482 | INFO     | ***************************************
[2026-04-25 17:37:32] 2026-04-25 15:36:02,482 | INFO     | 
[2026-04-25 17:37:32] 2026-04-25 15:36:02,486 | INFO     | architecture information:
[2026-04-25 17:37:32] 2026-04-25 15:36:02,487 | INFO     | executing command: cat /etc/os-release
[2026-04-25 17:37:32] 2026-04-25 15:36:02,503 | INFO     | cat /etc/os-release:
[2026-04-25 17:37:32] NAME="CentOS Linux"
[2026-04-25 17:37:32] VERSION="7 (Core)"
[2026-04-25 17:37:32] ID="centos"
[2026-04-25 17:37:32] ID_LIKE="rhel fedora"
[2026-04-25 17:37:32] VERSION_ID="7"
[2026-04-25 17:37:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-25 17:37:32] ANSI_COLOR="0;31"
[2026-04-25 17:37:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-25 17:37:32] HOME_URL="https://www.centos.org/"
[2026-04-25 17:37:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-25 17:37:32] 
[2026-04-25 17:37:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-25 17:37:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-25 17:37:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-25 17:37:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-25 17:37:32] 
[2026-04-25 17:37:32] 2026-04-25 15:36:02,503 | INFO     | ***************************************
[2026-04-25 17:37:32] 2026-04-25 15:36:03,006 | INFO     | executing command: df -mP /var/lib/boinc/var/slot40/slots/0
[2026-04-25 17:37:32] 2026-04-25 15:36:03,023 | INFO     | sufficient remaining disk space (34761342976 B)
[2026-04-25 17:37:32] 2026-04-25 15:36:03,024 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-25 17:37:32] 2026-04-25 15:36:03,024 | INFO     | current server update state: UPDATING_FINAL
[2026-04-25 17:37:32] 2026-04-25 15:36:03,024 | INFO     | update_server=False
[2026-04-25 17:37:32] 2026-04-25 15:36:03,024 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-25 17:37:32] 2026-04-25 15:36:03,024 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-25 17:37:32] 2026-04-25 15:36:03,025 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-25 17:37:32] 2026-04-25 15:36:03,569 | INFO     | all data control threads have been joined
[2026-04-25 17:37:32] 2026-04-25 15:36:03,690 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-25 17:37:32] 2026-04-25 15:36:03,690 | INFO     | aborting loop
[2026-04-25 17:37:32] 2026-04-25 15:36:03,898 | INFO     | all payload control threads have been joined
[2026-04-25 17:37:32] 2026-04-25 15:36:03,994 | INFO     | job.realtimelogging is not enabled
[2026-04-25 17:37:32] 2026-04-25 15:36:04,030 | INFO     | [job] retrieve thread has finished
[2026-04-25 17:37:32] 2026-04-25 15:36:04,229 | INFO     | [payload] execute_payloads thread has finished
[2026-04-25 17:37:32] 2026-04-25 15:36:04,553 | INFO     | all job control threads have been joined
[2026-04-25 17:37:32] 2026-04-25 15:36:04,575 | INFO     | [data] control thread has finished
[2026-04-25 17:37:32] 2026-04-25 15:36:04,614 | INFO     | [payload] validate_post thread has finished
[2026-04-25 17:37:32] 2026-04-25 15:36:04,695 | INFO     | [job] job monitor thread has finished
[2026-04-25 17:37:32] 2026-04-25 15:36:04,760 | INFO     | [payload] failed_post thread has finished
[2026-04-25 17:37:32] 2026-04-25 15:36:04,904 | INFO     | [payload] control thread has finished
[2026-04-25 17:37:32] 2026-04-25 15:36:05,001 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-25 17:37:32] 2026-04-25 15:36:05,031 | INFO     | [data] copytool_out thread has finished
[2026-04-25 17:37:32] 2026-04-25 15:36:05,109 | INFO     | [job] validate thread has finished
[2026-04-25 17:37:32] 2026-04-25 15:36:05,251 | INFO     | [job] create_data_payload thread has finished
[2026-04-25 17:37:32] 2026-04-25 15:36:05,347 | INFO     | [payload] validate_pre thread has finished
[2026-04-25 17:37:32] 2026-04-25 15:36:05,521 | INFO     | [data] copytool_in thread has finished
[2026-04-25 17:37:32] 2026-04-25 15:36:05,556 | INFO     | [job] control thread has finished
[2026-04-25 17:37:32] 2026-04-25 15:36:05,916 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-25 17:37:32] 2026-04-25 15:36:06,921 | INFO     | [job] queue monitor thread has finished
[2026-04-25 17:37:32] 2026-04-25 15:36:07,031 | INFO     | [data] queue_monitor thread has finished
[2026-04-25 17:37:32] 2026-04-25 15:36:32,853 | INFO     | PID=919530 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-25 17:37:32] 2026-04-25 15:36:32,854 | INFO     | .. there are 6 such processes running
[2026-04-25 17:37:32] 2026-04-25 15:36:32,854 | INFO     | found 0 job(s) in 20 queues
[2026-04-25 17:37:32] 2026-04-25 15:36:32,854 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-25 17:37:32] 2026-04-25 15:36:32,854 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-25 17:37:32] 2026-04-25 15:36:54,344 | INFO     | [monitor] cgroup control has ended
[2026-04-25 17:37:32] 2026-04-25 15:36:55,940 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23100150052672)>', '<ExcThread(monitor, started 23099916699392)>']
[2026-04-25 17:37:32] 2026-04-25 15:36:55,969 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-25 17:37:32] 2026-04-25 15:36:55,969 | INFO     | [monitor] control thread has ended
[2026-04-25 17:37:32] 2026-04-25 15:37:00,958 | INFO     | all workflow threads have been joined
[2026-04-25 17:37:32] 2026-04-25 15:37:00,958 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-25 17:37:32] 2026-04-25 15:37:00,959 | INFO     | traces error code: 0
[2026-04-25 17:37:32] 2026-04-25 15:37:00,959 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-25 17:37:32] 2026-04-25 15:37:01,116 [wrapper] ==== pilot stdout END ====
[2026-04-25 17:37:32] 2026-04-25 15:37:01,119 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-25 17:37:32] 2026-04-25 15:37:01,122 [wrapper] pilotpid: 919530
[2026-04-25 17:37:32] 2026-04-25 15:37:01,125 [wrapper] Pilot exit status: 0
[2026-04-25 17:37:32] 2026-04-25 15:37:01,137 [wrapper] pandaids: 7105796263
[2026-04-25 17:37:32] 2026-04-25 15:37:01,211 [wrapper] cleanup supervisor_pilot 1034858 919531
[2026-04-25 17:37:32] 2026-04-25 15:37:01,215 [wrapper] Test setup, not cleaning
[2026-04-25 17:37:32] 2026-04-25 15:37:01,218 [wrapper] apfmon messages muted
[2026-04-25 17:37:32] 2026-04-25 15:37:01,221 [wrapper] ==== wrapper stdout END ====
[2026-04-25 17:37:32] 2026-04-25 15:37:01,224 [wrapper] ==== wrapper stderr END ====
[2026-04-25 17:37:32]  *** Error codes and diagnostics ***
[2026-04-25 17:37:32]     "exeErrorCode": 0,
[2026-04-25 17:37:32]     "pilotErrorCode": 0,
[2026-04-25 17:37:32]  *** Listing of results directory ***
[2026-04-25 17:37:32] total 413424
[2026-04-25 17:37:32] -rw-r--r--. 1 boinc boinc    683926 Apr 25 12:46 pilot3.tar.gz
[2026-04-25 17:37:32] -rwx------. 1 boinc boinc     36322 Apr 25 13:28 runpilot2-wrapper.sh
[2026-04-25 17:37:32] -rw-r--r--. 1 boinc boinc      5631 Apr 25 13:29 queuedata.json
[2026-04-25 17:37:32] -rw-r--r--. 1 boinc boinc       100 Apr 25 15:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-25 17:37:32] -rwxr-xr-x. 1 boinc boinc      7986 Apr 25 15:23 run_atlas
[2026-04-25 17:37:32] -rw-r--r--. 1 boinc boinc       105 Apr 25 15:23 job.xml
[2026-04-25 17:37:32] -rw-r--r--. 1 boinc boinc      6482 Apr 25 15:23 init_data.xml
[2026-04-25 17:37:32] -rw-r--r--. 2 boinc boinc 221593579 Apr 25 15:23 EVNT.49263189._001231.pool.root.1
[2026-04-25 17:37:32] -rw-r--r--. 2 boinc boinc     15667 Apr 25 15:23 start_atlas.sh
[2026-04-25 17:37:32] drwxrwx--x. 2 boinc boinc      4096 Apr 25 15:23 shared
[2026-04-25 17:37:32] -rw-r--r--. 2 boinc boinc    697427 Apr 25 15:23 input.tar.gz
[2026-04-25 17:37:32] -rw-r--r--. 1 boinc boinc         0 Apr 25 15:23 boinc_lockfile
[2026-04-25 17:37:32] -rw-r--r--. 1 boinc boinc      2575 Apr 25 15:23 pandaJob.out
[2026-04-25 17:37:32] -rw-------. 1 boinc boinc    997243 Apr 25 15:23 agis_schedconf.cvmfs.json
[2026-04-25 17:37:32] -rw-------. 1 boinc boinc   1509089 Apr 25 15:23 agis_ddmendpoints.agis.ALL.json
[2026-04-25 17:37:32] -rw-------. 1 boinc boinc       447 Apr 25 15:23 workernode_map.json
[2026-04-25 17:37:32] drwx------. 5 boinc boinc      4096 Apr 25 15:23 pilot3
[2026-04-25 17:37:32] -rw-------. 1 boinc boinc 195566089 Apr 25 17:35 HITS.49263191._075750.pool.root.1
[2026-04-25 17:37:32] -rw-r--r--. 1 boinc boinc       487 Apr 25 17:35 boinc_task_state.xml
[2026-04-25 17:37:32] -rw-------. 1 boinc boinc        95 Apr 25 17:35 pilot_heartbeat.json
[2026-04-25 17:37:32] -rw-------. 1 boinc boinc      1033 Apr 25 17:35 memory_monitor_summary.json
[2026-04-25 17:37:32] -rw-------. 1 boinc boinc    263123 Apr 25 17:35 log.49263191._075750.job.log.tgz.1
[2026-04-25 17:37:32] -rw-------. 1 boinc boinc      6419 Apr 25 17:36 heartbeat_new.json
[2026-04-25 17:37:32] -rw-------. 1 boinc boinc      6310 Apr 25 17:36 heartbeat.json
[2026-04-25 17:37:32] -rw-------. 1 boinc boinc      4902 Apr 25 17:37 pilotlog.txt
[2026-04-25 17:37:32] -rw-------. 1 boinc boinc    764911 Apr 25 17:37 log.49263191._075750.job.log.1
[2026-04-25 17:37:32] -rw-------. 1 boinc boinc       357 Apr 25 17:37 output.list
[2026-04-25 17:37:32] -rw-r--r--. 1 boinc boinc       410 Apr 25 17:37 runtime_log
[2026-04-25 17:37:32] -rw-------. 1 boinc boinc   1044480 Apr 25 17:37 result.tar.gz
[2026-04-25 17:37:32] -rw-r--r--. 1 boinc boinc      8827 Apr 25 17:37 runtime_log.err
[2026-04-25 17:37:32] -rw-------. 1 boinc boinc       661 Apr 25 17:37 a55d4c7fe597.diag
[2026-04-25 17:37:32] -rw-r--r--. 1 boinc boinc        26 Apr 25 17:37 wrapper_checkpoint.txt
[2026-04-25 17:37:32] -rw-r--r--. 1 boinc boinc      8192 Apr 25 17:37 boinc_mmap_file
[2026-04-25 17:37:32] -rw-r--r--. 1 boinc boinc     20976 Apr 25 17:37 stderr.txt
[2026-04-25 17:37:32] HITS file was successfully produced:
[2026-04-25 17:37:32] -rw-------. 1 boinc boinc 195566089 Apr 25 17:35 shared/HITS.pool.root.1
[2026-04-25 17:37:32]  *** Contents of shared directory: ***
[2026-04-25 17:37:32] total 409112
[2026-04-25 17:37:32] -rw-r--r--. 2 boinc boinc 221593579 Apr 25 15:23 ATLAS.root_0
[2026-04-25 17:37:32] -rw-r--r--. 2 boinc boinc     15667 Apr 25 15:23 start_atlas.sh
[2026-04-25 17:37:32] -rw-r--r--. 2 boinc boinc    697427 Apr 25 15:23 input.tar.gz
[2026-04-25 17:37:32] -rw-------. 1 boinc boinc 195566089 Apr 25 17:35 HITS.pool.root.1
[2026-04-25 17:37:32] -rw-------. 1 boinc boinc   1044480 Apr 25 17:37 result.tar.gz
17:37:34 (915657): run_atlas exited; CPU time 30884.018466
17:37:34 (915657): called boinc_finish(0)

</stderr_txt>
]]>

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