Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:30:48 (3145915): wrapper (7.7.26015): starting
07:30:48 (3145915): wrapper: running run_atlas (--nthreads 12)
[2026-04-25 07:30:48] Arguments: --nthreads 12
[2026-04-25 07:30:48] Threads: 12
[2026-04-25 07:30:48] Checking for CVMFS
[2026-04-25 07:30:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-25 07:30:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-25 07:30:49] Running cvmfs_config stat atlas.cern.ch
[2026-04-25 07:30:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-25 07:30:49] 2.13.3.0 9105 173958 625520 158846 1 691 27467129 39288833 19588 16776704 0 443635199 99.640 491530073 30665 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-04-25 07:30:49] CVMFS is ok
[2026-04-25 07:30:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-25 07:30:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-25 07:30:49] Further information can be found at the LHC@home message board.
[2026-04-25 07:30:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-25 07:30:49] Checking for apptainer binary...
[2026-04-25 07:30:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-25 07:30:49] Running /usr/bin/apptainer --version
[2026-04-25 07:30:49] apptainer version 1.4.5-2.el9
[2026-04-25 07:30:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-25 07:30:50] c-211-21.aglt2.org
[2026-04-25 07:30:50] apptainer works
[2026-04-25 07:30:50] Set ATHENA_PROC_NUMBER=12
[2026-04-25 07:30:50] Set ATHENA_CORE_NUMBER=12
[2026-04-25 07:30:50] Starting ATLAS job with PandaID=7105775756
[2026-04-25 07:30:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-25 17:25:45]  *** The last 200 lines of the pilot log: ***
[2026-04-25 17:25:45] 2026-04-25 21:25:01,587 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-25 17:25:45] 2026-04-25 21:25:01,587 | INFO     | log transfer has been attempted: DONE
[2026-04-25 17:25:45] 2026-04-25 21:25:01,587 | INFO     | job 7105775756 has finished - writing final server update
[2026-04-25 17:25:45] 2026-04-25 21:25:01,588 | INFO     | total number of processed events: 400 (read)
[2026-04-25 17:25:45] 2026-04-25 21:25:01,891 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7105775756/memory_monitor_summary.json (trf name=prmon)
[2026-04-25 17:25:45] 2026-04-25 21:25:01,917 | INFO     | extracted standard info from prmon json
[2026-04-25 17:25:45] 2026-04-25 21:25:01,917 | INFO     | extracted standard memory fields from prmon json
[2026-04-25 17:25:45] 2026-04-25 21:25:01,922 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-25 17:25:45] 2026-04-25 21:25:01,923 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-25 17:25:45] 2026-04-25 21:25:01,939 | INFO     | fitting pss+swap vs Time
[2026-04-25 17:25:45] 2026-04-25 21:25:01,940 | INFO     | sum of square deviations: 61126999710.91591
[2026-04-25 17:25:45] 2026-04-25 21:25:01,955 | INFO     | sum of deviations: 100293923401.90573
[2026-04-25 17:25:45] 2026-04-25 21:25:01,961 | INFO     | mean x (centered): 0.0
[2026-04-25 17:25:45] 2026-04-25 21:25:01,961 | INFO     | mean y: 2687788.823024055
[2026-04-25 17:25:45] 2026-04-25 21:25:01,962 | INFO     | intersect: 2687788.823024055
[2026-04-25 17:25:45] 2026-04-25 21:25:01,963 | INFO     | chi2: 4.711295469353374
[2026-04-25 17:25:45] 2026-04-25 21:25:01,964 | INFO     | sum of square deviations: 59565181599.78507
[2026-04-25 17:25:45] 2026-04-25 21:25:01,976 | INFO     | sum of deviations: 179934396716.7055
[2026-04-25 17:25:45] 2026-04-25 21:25:01,977 | INFO     | mean x (centered): 0.0
[2026-04-25 17:25:45] 2026-04-25 21:25:01,978 | INFO     | mean y: 2695524.095320624
[2026-04-25 17:25:45] 2026-04-25 21:25:01,978 | INFO     | intersect: 2695524.095320624
[2026-04-25 17:25:45] 2026-04-25 21:25:01,979 | INFO     | chi2: 3.3042398829570137
[2026-04-25 17:25:45] 2026-04-25 21:25:01,979 | INFO     | current chi2=3.3042398829570137 (change=29.865577218604777 %)
[2026-04-25 17:25:45] 2026-04-25 21:25:01,980 | INFO     | sum of square deviations: 58030025946.98437
[2026-04-25 17:25:45] 2026-04-25 21:25:01,996 | INFO     | sum of deviations: 178545076496.1238
[2026-04-25 17:25:45] 2026-04-25 21:25:01,996 | INFO     | mean x (centered): 0.0
[2026-04-25 17:25:45] 2026-04-25 21:25:01,996 | INFO     | mean y: 2695386.2465034965
[2026-04-25 17:25:45] 2026-04-25 21:25:01,996 | INFO     | intersect: 2695386.2465034965
[2026-04-25 17:25:45] 2026-04-25 21:25:01,998 | INFO     | chi2: 3.3047687802378336
[2026-04-25 17:25:45] 2026-04-25 21:25:02,001 | INFO     | current chi2=3.3047687802378336 (change=-0.01600662480796137 %)
[2026-04-25 17:25:45] 2026-04-25 21:25:02,001 | INFO     | right removable region: 571
[2026-04-25 17:25:45] 2026-04-25 21:25:02,002 | INFO     | sum of square deviations: 59564798396.40888
[2026-04-25 17:25:45] 2026-04-25 21:25:02,077 | INFO     | sum of deviations: -76869176395.99307
[2026-04-25 17:25:45] 2026-04-25 21:25:02,077 | INFO     | mean x (centered): 0.0
[2026-04-25 17:25:45] 2026-04-25 21:25:02,077 | INFO     | mean y: 2705059.3760831887
[2026-04-25 17:25:45] 2026-04-25 21:25:02,078 | INFO     | intersect: 2705059.3760831887
[2026-04-25 17:25:45] 2026-04-25 21:25:02,079 | INFO     | chi2: 1.6445868238184533
[2026-04-25 17:25:45] 2026-04-25 21:25:02,079 | INFO     | current chi2=1.6445868238184533 (change=65.09268343460162 %)
[2026-04-25 17:25:45] 2026-04-25 21:25:02,080 | INFO     | sum of square deviations: 58029434794.27985
[2026-04-25 17:25:45] 2026-04-25 21:25:02,100 | INFO     | sum of deviations: -118054164804.83917
[2026-04-25 17:25:45] 2026-04-25 21:25:02,100 | INFO     | mean x (centered): 0.0
[2026-04-25 17:25:45] 2026-04-25 21:25:02,100 | INFO     | mean y: 2709148.9020979023
[2026-04-25 17:25:45] 2026-04-25 21:25:02,100 | INFO     | intersect: 2709148.9020979023
[2026-04-25 17:25:45] 2026-04-25 21:25:02,101 | INFO     | chi2: 1.4770823686142704
[2026-04-25 17:25:45] 2026-04-25 21:25:02,102 | INFO     | current chi2=1.4770823686142704 (change=10.185199879886293 %)
[2026-04-25 17:25:45] 2026-04-25 21:25:02,102 | INFO     | left removable region: 10
[2026-04-25 17:25:45] 2026-04-25 21:25:02,103 | INFO     | sum of square deviations: 54745636237.180305
[2026-04-25 17:25:45] 2026-04-25 21:25:02,127 | INFO     | sum of deviations: -37235604676.06239
[2026-04-25 17:25:45] 2026-04-25 21:25:02,127 | INFO     | mean x (centered): 0.0
[2026-04-25 17:25:45] 2026-04-25 21:25:02,127 | INFO     | mean y: 2717278.907308378
[2026-04-25 17:25:45] 2026-04-25 21:25:02,127 | INFO     | intersect: 2717278.907308378
[2026-04-25 17:25:45] 2026-04-25 21:25:02,128 | INFO     | chi2: 0.04218948610388321
[2026-04-25 17:25:45] 2026-04-25 21:25:02,129 | INFO     | current memory leak: -0.68 B/s (using 561 data points, chi2=0.04)
[2026-04-25 17:25:45] 2026-04-25 21:25:02,129 | INFO     | could have reported an average CPU frequency of 2899 MHz (23 samples)
[2026-04-25 17:25:45] 2026-04-25 21:25:02,130 | INFO     | ..............................
[2026-04-25 17:25:45] 2026-04-25 21:25:02,130 | INFO     | . Timing measurements:
[2026-04-25 17:25:45] 2026-04-25 21:25:02,130 | INFO     | . get job = 0 s
[2026-04-25 17:25:45] 2026-04-25 21:25:02,130 | INFO     | . initial setup = 24 s
[2026-04-25 17:25:45] 2026-04-25 21:25:02,130 | INFO     | . payload setup = 58 s
[2026-04-25 17:25:45] 2026-04-25 21:25:02,131 | INFO     | . stage-in = 0 s
[2026-04-25 17:25:45] 2026-04-25 21:25:02,131 | INFO     | . payload execution = 35495 s
[2026-04-25 17:25:45] 2026-04-25 21:25:02,131 | INFO     | . stage-out = 9 s
[2026-04-25 17:25:45] 2026-04-25 21:25:02,131 | INFO     | . log creation = 1 s
[2026-04-25 17:25:45] 2026-04-25 21:25:02,131 | INFO     | ..............................
[2026-04-25 17:25:45] 2026-04-25 21:25:02,188 | INFO     | PID=3156293 has CPU usage=11.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-25 17:25:45] 2026-04-25 21:25:02,189 | INFO     | .. there are 35 such processes running
[2026-04-25 17:25:45] 2026-04-25 21:25:02,485 | INFO     | 
[2026-04-25 17:25:45] 2026-04-25 21:25:02,485 | INFO     | job summary report
[2026-04-25 17:25:45] 2026-04-25 21:25:02,485 | INFO     | --------------------------------------------------
[2026-04-25 17:25:45] 2026-04-25 21:25:02,485 | INFO     | PanDA job id: 7105775756
[2026-04-25 17:25:45] 2026-04-25 21:25:02,486 | INFO     | task id: 49263191
[2026-04-25 17:25:45] 2026-04-25 21:25:02,486 | INFO     | errors: (none)
[2026-04-25 17:25:45] 2026-04-25 21:25:02,486 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-25 17:25:45] 2026-04-25 21:25:02,486 | INFO     | pilot state: finished 
[2026-04-25 17:25:45] 2026-04-25 21:25:02,486 | INFO     | transexitcode: 0
[2026-04-25 17:25:45] 2026-04-25 21:25:02,486 | INFO     | exeerrorcode: 0
[2026-04-25 17:25:45] 2026-04-25 21:25:02,487 | INFO     | exeerrordiag: 
[2026-04-25 17:25:45] 2026-04-25 21:25:02,487 | INFO     | exitcode: 0
[2026-04-25 17:25:45] 2026-04-25 21:25:02,487 | INFO     | exitmsg: OK
[2026-04-25 17:25:45] 2026-04-25 21:25:02,508 | INFO     | cpuconsumptiontime: 79251 s
[2026-04-25 17:25:45] 2026-04-25 21:25:02,508 | INFO     | nevents: 400
[2026-04-25 17:25:45] 2026-04-25 21:25:02,509 | INFO     | neventsw: 0
[2026-04-25 17:25:45] 2026-04-25 21:25:02,509 | INFO     | pid: 3171014
[2026-04-25 17:25:45] 2026-04-25 21:25:02,509 | INFO     | pgrp: 3171014
[2026-04-25 17:25:45] 2026-04-25 21:25:02,518 | INFO     | corecount: 12
[2026-04-25 17:25:45] 2026-04-25 21:25:02,518 | INFO     | event service: False
[2026-04-25 17:25:45] 2026-04-25 21:25:02,519 | INFO     | sizes: {0: 2274004, 1: 2274605, 2: 2274717, 3: 2276546, 4: 2276546, 35557: 2316649, 35558: 2316776, 35571: 2325830, 35573: 2325886, 35576: 2326080}
[2026-04-25 17:25:45] 2026-04-25 21:25:02,519 | INFO     | --------------------------------------------------
[2026-04-25 17:25:45] 2026-04-25 21:25:02,519 | INFO     | 
[2026-04-25 17:25:45] 2026-04-25 21:25:02,519 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-04-25 17:25:45] 2026-04-25 21:25:02,943 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-25 17:25:45] 2026-04-25 21:25:02,944 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-25 17:25:45] 2026-04-25 21:25:02,944 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-25 17:25:45] 2026-04-25 21:25:02,944 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-25 17:25:45] 2026-04-25 21:25:02,944 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-25 17:25:45] 2026-04-25 21:25:02,945 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-25 17:25:45] 2026-04-25 21:25:02,945 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-25 17:25:45] 2026-04-25 21:25:02,945 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-25 17:25:45] 2026-04-25 21:25:02,945 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-25 17:25:45] 2026-04-25 21:25:02,945 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-25 17:25:45] 2026-04-25 21:25:02,945 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-25 17:25:45] 2026-04-25 21:25:02,946 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-25 17:25:45] 2026-04-25 21:25:02,946 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-25 17:25:45] 2026-04-25 21:25:02,946 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-25 17:25:45] 2026-04-25 21:25:02,946 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-25 17:25:45] 2026-04-25 21:25:02,946 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-25 17:25:45] 2026-04-25 21:25:02,946 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-25 17:25:45] 2026-04-25 21:25:02,947 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-25 17:25:45] 2026-04-25 21:25:02,947 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-25 17:25:45] 2026-04-25 21:25:02,947 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-25 17:25:45] 2026-04-25 21:25:02,987 | INFO     | job 7105775756 has completed (purged errors)
[2026-04-25 17:25:45] 2026-04-25 21:25:02,988 | INFO     | overall cleanup function is called
[2026-04-25 17:25:45] 2026-04-25 21:25:04,030 | INFO     | --- collectZombieJob: --- 10, [3171014]
[2026-04-25 17:25:45] 2026-04-25 21:25:04,030 | INFO     | zombie collector waiting for pid 3171014
[2026-04-25 17:25:45] 2026-04-25 21:25:04,031 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-25 17:25:45] 2026-04-25 21:25:04,031 | INFO     | collected zombie processes
[2026-04-25 17:25:45] 2026-04-25 21:25:04,031 | INFO     | will attempt to kill all subprocesses of pid=3171014
[2026-04-25 17:25:45] 2026-04-25 21:25:08,676 | INFO     | process IDs to be killed: [3171014] (in reverse order)
[2026-04-25 17:25:45] 2026-04-25 21:25:09,368 | WARNING  | found no corresponding commands to process id(s)
[2026-04-25 17:25:45] 2026-04-25 21:25:09,379 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-25 17:25:45] 2026-04-25 21:25:09,505 | INFO     | did not find any defunct processes belonging to 3171014
[2026-04-25 17:25:45] 2026-04-25 21:25:09,757 | INFO     | did not find any defunct processes belonging to 3171014
[2026-04-25 17:25:45] 2026-04-25 21:25:09,758 | INFO     | Ready for new job
[2026-04-25 17:25:45] 2026-04-25 21:25:09,761 | INFO     | ***************************************
[2026-04-25 17:25:45] 2026-04-25 21:25:09,761 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-25 17:25:45] 2026-04-25 21:25:09,817 | INFO     | ***************************************
[2026-04-25 17:25:45] 2026-04-25 21:25:09,818 | INFO     | 
[2026-04-25 17:25:45] 2026-04-25 21:25:09,820 | INFO     | architecture information:
[2026-04-25 17:25:45] 2026-04-25 21:25:09,863 | INFO     | executing command: cat /etc/os-release
[2026-04-25 17:25:45] 2026-04-25 21:25:10,010 | INFO     | cat /etc/os-release:
[2026-04-25 17:25:45] NAME="CentOS Linux"
[2026-04-25 17:25:45] VERSION="7 (Core)"
[2026-04-25 17:25:45] ID="centos"
[2026-04-25 17:25:45] ID_LIKE="rhel fedora"
[2026-04-25 17:25:45] VERSION_ID="7"
[2026-04-25 17:25:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-25 17:25:45] ANSI_COLOR="0;31"
[2026-04-25 17:25:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-25 17:25:45] HOME_URL="https://www.centos.org/"
[2026-04-25 17:25:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-25 17:25:45] 
[2026-04-25 17:25:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-25 17:25:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-25 17:25:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-25 17:25:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-25 17:25:45] 
[2026-04-25 17:25:45] 2026-04-25 21:25:10,010 | INFO     | ***************************************
[2026-04-25 17:25:45] 2026-04-25 21:25:10,513 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-04-25 17:25:45] 2026-04-25 21:25:10,755 | INFO     | sufficient remaining disk space (53304360960 B)
[2026-04-25 17:25:45] 2026-04-25 21:25:10,755 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-25 17:25:45] 2026-04-25 21:25:10,755 | INFO     | current server update state: UPDATING_FINAL
[2026-04-25 17:25:45] 2026-04-25 21:25:10,755 | INFO     | update_server=False
[2026-04-25 17:25:45] 2026-04-25 21:25:10,777 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-25 17:25:45] 2026-04-25 21:25:10,887 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-25 17:25:45] 2026-04-25 21:25:10,946 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-25 17:25:45] 2026-04-25 21:25:10,947 | INFO     | aborting loop
[2026-04-25 17:25:45] 2026-04-25 21:25:10,972 | INFO     | all data control threads have been joined
[2026-04-25 17:25:45] 2026-04-25 21:25:10,993 | INFO     | [monitor] cgroup control has ended
[2026-04-25 17:25:45] 2026-04-25 21:25:11,318 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-25 17:25:45] 2026-04-25 21:25:11,479 | INFO     | all job control threads have been joined
[2026-04-25 17:25:45] 2026-04-25 21:25:11,584 | INFO     | all payload control threads have been joined
[2026-04-25 17:25:45] 2026-04-25 21:25:11,813 | INFO     | [job] retrieve thread has finished
[2026-04-25 17:25:45] 2026-04-25 21:25:11,823 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-25 17:25:45] 2026-04-25 21:25:11,952 | INFO     | [job] job monitor thread has finished
[2026-04-25 17:25:45] 2026-04-25 21:25:11,989 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-25 17:25:45] 2026-04-25 21:25:12,003 | INFO     | [data] control thread has finished
[2026-04-25 17:25:45] 2026-04-25 21:25:12,343 | INFO     | [job] create_data_payload thread has finished
[2026-04-25 17:25:45] 2026-04-25 21:25:12,348 | INFO     | [data] copytool_in thread has finished
[2026-04-25 17:25:45] 2026-04-25 21:25:12,476 | INFO     | [payload] validate_pre thread has finished
[2026-04-25 17:25:45] 2026-04-25 21:25:12,485 | INFO     | [job] control thread has finished
[2026-04-25 17:25:45] 2026-04-25 21:25:12,590 | INFO     | [payload] control thread has finished
[2026-04-25 17:25:45] 2026-04-25 21:25:12,723 | INFO     | [payload] execute_payloads thread has finished
[2026-04-25 17:25:45] 2026-04-25 21:25:12,829 | INFO     | [job] queue monitor thread has finished
[2026-04-25 17:25:45] 2026-04-25 21:25:12,832 | INFO     | [job] validate thread has finished
[2026-04-25 17:25:45] 2026-04-25 21:25:13,325 | INFO     | [data] copytool_out thread has finished
[2026-04-25 17:25:45] 2026-04-25 21:25:13,404 | INFO     | [payload] failed_post thread has finished
[2026-04-25 17:25:45] 2026-04-25 21:25:13,426 | INFO     | [payload] validate_post thread has finished
[2026-04-25 17:25:45] 2026-04-25 21:25:14,935 | INFO     | [data] queue_monitor thread has finished
[2026-04-25 17:25:45] 2026-04-25 21:25:16,532 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140221765936960)>', '<ExcThread(monitor, started 140221396010752)>']
[2026-04-25 17:25:45] 2026-04-25 21:25:21,563 | INFO     | all workflow threads have been joined
[2026-04-25 17:25:45] 2026-04-25 21:25:21,567 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-25 17:25:45] 2026-04-25 21:25:21,568 | INFO     | traces error code: 0
[2026-04-25 17:25:45] 2026-04-25 21:25:21,568 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-25 17:25:45] 2026-04-25 21:25:43,507 | INFO     | PID=3156293 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-25 17:25:45] 2026-04-25 21:25:43,507 | INFO     | .. there are 35 such processes running
[2026-04-25 17:25:45] 2026-04-25 21:25:43,508 | INFO     | found 0 job(s) in 20 queues
[2026-04-25 17:25:45] 2026-04-25 21:25:43,508 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-25 17:25:45] 2026-04-25 21:25:43,508 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-25 17:25:45] 2026-04-25 21:25:43,508 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-25 17:25:45] 2026-04-25 21:25:43,508 | INFO     | [monitor] control thread has ended
[2026-04-25 17:25:45] 2026-04-25 21:25:44,061 [wrapper] ==== pilot stdout END ====
[2026-04-25 17:25:45] 2026-04-25 21:25:44,102 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-25 17:25:45] 2026-04-25 21:25:44,149 [wrapper] pilotpid: 3156293
[2026-04-25 17:25:45] 2026-04-25 21:25:44,200 [wrapper] Pilot exit status: 0
[2026-04-25 17:25:45] 2026-04-25 21:25:44,353 [wrapper] pandaids: 7105775756
[2026-04-25 17:25:45] 2026-04-25 21:25:45,417 [wrapper] cleanup supervisor_pilot  941985 3156295
[2026-04-25 17:25:45] 2026-04-25 21:25:45,423 [wrapper] Test setup, not cleaning
[2026-04-25 17:25:45] 2026-04-25 21:25:45,426 [wrapper] apfmon messages muted
[2026-04-25 17:25:45] 2026-04-25 21:25:45,429 [wrapper] ==== wrapper stdout END ====
[2026-04-25 17:25:45] 2026-04-25 21:25:45,432 [wrapper] ==== wrapper stderr END ====
[2026-04-25 17:25:45]  *** Error codes and diagnostics ***
[2026-04-25 17:25:45]     "exeErrorCode": 0,
[2026-04-25 17:25:45]     "pilotErrorCode": 0,
[2026-04-25 17:25:45]  *** Listing of results directory ***
[2026-04-25 17:25:45] total 420140
[2026-04-25 17:25:45] -rw-r--r--. 1 boincer umatlas    683926 Apr 25 06:46 pilot3.tar.gz
[2026-04-25 17:25:45] -rw-r--r--. 1 boincer umatlas      5631 Apr 25 07:27 queuedata.json
[2026-04-25 17:25:45] -rwx------. 1 boincer umatlas     36322 Apr 25 07:27 runpilot2-wrapper.sh
[2026-04-25 17:25:45] -rw-r--r--. 1 boincer umatlas       100 Apr 25 07:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-25 17:25:45] -rwxr-xr-x. 1 boincer umatlas      7986 Apr 25 07:30 run_atlas
[2026-04-25 17:25:45] -rw-r--r--. 1 boincer umatlas       105 Apr 25 07:30 job.xml
[2026-04-25 17:25:45] -rw-r--r--. 2 boincer umatlas 225619017 Apr 25 07:30 EVNT.49263189._000814.pool.root.1
[2026-04-25 17:25:45] -rw-r--r--. 2 boincer umatlas     15667 Apr 25 07:30 start_atlas.sh
[2026-04-25 17:25:45] drwxrwx--x. 2 boincer umatlas      4096 Apr 25 07:30 shared
[2026-04-25 17:25:45] -rw-r--r--. 2 boincer umatlas    697424 Apr 25 07:30 input.tar.gz
[2026-04-25 17:25:45] -rw-r--r--. 1 boincer umatlas         0 Apr 25 07:30 boinc_lockfile
[2026-04-25 17:25:45] -rw-r--r--. 1 boincer umatlas      2577 Apr 25 07:30 pandaJob.out
[2026-04-25 17:25:45] -rw-------. 1 boincer umatlas        57 Apr 25 07:30 setup.sh.local
[2026-04-25 17:25:45] -rw-------. 1 boincer umatlas    997219 Apr 25 07:31 agis_schedconf.cvmfs.json
[2026-04-25 17:25:45] -rw-------. 1 boincer umatlas       434 Apr 25 07:31 workernode_map.json
[2026-04-25 17:25:45] drwx------. 5 boincer umatlas      4096 Apr 25 07:32 pilot3
[2026-04-25 17:25:45] -rw-r--r--. 1 boincer umatlas      6439 Apr 25 17:19 init_data.xml
[2026-04-25 17:25:45] -rw-------. 1 boincer umatlas 194176788 Apr 25 17:22 HITS.49263191._075578.pool.root.1
[2026-04-25 17:25:45] -rw-r--r--. 1 boincer umatlas       488 Apr 25 17:22 boinc_task_state.xml
[2026-04-25 17:25:45] -rw-------. 1 boincer umatlas      1044 Apr 25 17:24 memory_monitor_summary.json
[2026-04-25 17:25:45] -rw-------. 1 boincer umatlas   1509089 Apr 25 17:24 agis_ddmendpoints.agis.ALL.json
[2026-04-25 17:25:45] -rw-------. 1 boincer umatlas    606611 Apr 25 17:24 log.49263191._075578.job.log.tgz.1
[2026-04-25 17:25:45] -rw-------. 1 boincer umatlas      6409 Apr 25 17:25 heartbeat_new.json
[2026-04-25 17:25:45] -rw-------. 1 boincer umatlas      6300 Apr 25 17:25 heartbeat.json
[2026-04-25 17:25:45] -rw-------. 1 boincer umatlas        95 Apr 25 17:25 pilot_heartbeat.json
[2026-04-25 17:25:45] -rw-r--r--. 1 boincer umatlas      8192 Apr 25 17:25 boinc_mmap_file
[2026-04-25 17:25:45] -rw-------. 1 boincer umatlas       823 Apr 25 17:25 pilotlog.txt
[2026-04-25 17:25:45] -rw-r--r--. 1 boincer umatlas        28 Apr 25 17:25 wrapper_checkpoint.txt
[2026-04-25 17:25:45] -rw-------. 1 boincer umatlas   2543221 Apr 25 17:25 log.49263191._075578.job.log.1
[2026-04-25 17:25:45] -rw-------. 1 boincer umatlas       357 Apr 25 17:25 output.list
[2026-04-25 17:25:45] -rw-r--r--. 1 boincer umatlas       410 Apr 25 17:25 runtime_log
[2026-04-25 17:25:45] -rw-------. 1 boincer umatlas   3164160 Apr 25 17:25 result.tar.gz
[2026-04-25 17:25:45] -rw-r--r--. 1 boincer umatlas      8967 Apr 25 17:25 runtime_log.err
[2026-04-25 17:25:45] -rw-------. 1 boincer umatlas       658 Apr 25 17:25 a523103f0b69.diag
[2026-04-25 17:25:45] -rw-r--r--. 1 boincer umatlas     20972 Apr 25 17:25 stderr.txt
[2026-04-25 17:25:45] HITS file was successfully produced:
[2026-04-25 17:25:45] -rw-------. 1 boincer umatlas 194176788 Apr 25 17:22 shared/HITS.pool.root.1
[2026-04-25 17:25:45]  *** Contents of shared directory: ***
[2026-04-25 17:25:46] total 413756
[2026-04-25 17:25:46] -rw-r--r--. 2 boincer umatlas 225619017 Apr 25 07:30 ATLAS.root_0
[2026-04-25 17:25:46] -rw-r--r--. 2 boincer umatlas     15667 Apr 25 07:30 start_atlas.sh
[2026-04-25 17:25:46] -rw-r--r--. 2 boincer umatlas    697424 Apr 25 07:30 input.tar.gz
[2026-04-25 17:25:46] -rw-------. 1 boincer umatlas 194176788 Apr 25 17:22 HITS.pool.root.1
[2026-04-25 17:25:46] -rw-------. 1 boincer umatlas   3164160 Apr 25 17:25 result.tar.gz
17:25:47 (3145915): run_atlas exited; CPU time 80693.050560
17:25:47 (3145915): called boinc_finish(0)

</stderr_txt>
]]>

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