Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:51:47 (806829): wrapper (7.7.26015): starting
16:51:47 (806829): wrapper: running run_atlas (--nthreads 4)
[2026-04-22 16:51:47] Arguments: --nthreads 4
[2026-04-22 16:51:47] Threads: 4
[2026-04-22 16:51:47] Checking for CVMFS
[2026-04-22 16:51:47] No cvmfs_config command found, will try listing directly
[2026-04-22 16:51:47] CVMFS is ok
[2026-04-22 16:51:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-22 16:51:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-22 16:51:47] Further information can be found at the LHC@home message board.
[2026-04-22 16:51:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-22 16:51:47] Checking for apptainer binary...
[2026-04-22 16:51:47] which: no apptainer in ((null))
[2026-04-22 16:51:47] apptainer is not installed, using version from CVMFS
[2026-04-22 16:51:47] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-22 16:51:47] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot128/slots/4/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2026-04-22 16:51:47] apptainer works
[2026-04-22 16:51:47] Set ATHENA_PROC_NUMBER=4
[2026-04-22 16:51:47] Set ATHENA_CORE_NUMBER=4
[2026-04-22 16:51:47] Starting ATLAS job with PandaID=7105442434
[2026-04-22 16:51:47] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot128/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:12:53 (1018681): wrapper (7.7.26015): starting
18:12:53 (1018681): wrapper: running run_atlas (--nthreads 4)
[2026-04-22 18:12:53] Arguments: --nthreads 4
[2026-04-22 18:12:53] Threads: 4
[2026-04-22 18:12:53] This job has been restarted, cleaning up previous attempt
[2026-04-22 18:12:53] Checking for CVMFS
[2026-04-22 18:12:53] No cvmfs_config command found, will try listing directly
[2026-04-22 18:12:53] CVMFS is ok
[2026-04-22 18:12:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-22 18:12:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-22 18:12:54] Further information can be found at the LHC@home message board.
[2026-04-22 18:12:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-22 18:12:54] Checking for apptainer binary...
[2026-04-22 18:12:54] which: no apptainer in ((null))
[2026-04-22 18:12:54] apptainer is not installed, using version from CVMFS
[2026-04-22 18:12:54] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-22 18:12:54] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot128/slots/4/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2026-04-22 18:12:54] apptainer works
[2026-04-22 18:12:54] Set ATHENA_PROC_NUMBER=4
[2026-04-22 18:12:54] Set ATHENA_CORE_NUMBER=4
[2026-04-22 18:12:54] Starting ATLAS job with PandaID=7105442434
[2026-04-22 18:12:54] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot128/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-22 22:38:32]  *** The last 200 lines of the pilot log: ***
[2026-04-22 22:38:32] 2026-04-22 20:37:44,601 | INFO     | extracted standard memory fields from prmon json
[2026-04-22 22:38:32] 2026-04-22 20:37:44,602 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-22 22:38:32] 2026-04-22 20:37:44,602 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-22 22:38:32] 2026-04-22 20:37:44,609 | INFO     | fitting pss+swap vs Time
[2026-04-22 22:38:32] 2026-04-22 20:37:44,609 | INFO     | sum of square deviations: 5449944045.0
[2026-04-22 22:38:32] 2026-04-22 20:37:44,612 | INFO     | sum of deviations: 31966447259.0
[2026-04-22 22:38:32] 2026-04-22 20:37:44,612 | INFO     | mean x (centered): 0.0
[2026-04-22 22:38:32] 2026-04-22 20:37:44,612 | INFO     | mean y: 2363210.923076923
[2026-04-22 22:38:32] 2026-04-22 20:37:44,613 | INFO     | intersect: 2363210.923076923
[2026-04-22 22:38:32] 2026-04-22 20:37:44,613 | INFO     | chi2: 1.1127586599958819
[2026-04-22 22:38:32] 2026-04-22 20:37:44,614 | INFO     | sum of square deviations: 5141528960.0
[2026-04-22 22:38:32] 2026-04-22 20:37:44,616 | INFO     | sum of deviations: 31296683302.0
[2026-04-22 22:38:32] 2026-04-22 20:37:44,616 | INFO     | mean x (centered): 0.0
[2026-04-22 22:38:32] 2026-04-22 20:37:44,616 | INFO     | mean y: 2362879.7529411763
[2026-04-22 22:38:32] 2026-04-22 20:37:44,617 | INFO     | intersect: 2362879.7529411763
[2026-04-22 22:38:32] 2026-04-22 20:37:44,617 | INFO     | chi2: 1.113002070838862
[2026-04-22 22:38:32] 2026-04-22 20:37:44,617 | INFO     | current chi2=1.113002070838862 (change=-0.021874540430983924 %)
[2026-04-22 22:38:32] 2026-04-22 20:37:44,617 | INFO     | right removable region: 254
[2026-04-22 22:38:32] 2026-04-22 20:37:44,618 | INFO     | sum of square deviations: 5141528960.0
[2026-04-22 22:38:32] 2026-04-22 20:37:44,620 | INFO     | sum of deviations: 3778452911.0000005
[2026-04-22 22:38:32] 2026-04-22 20:37:44,621 | INFO     | mean x (centered): 0.0
[2026-04-22 22:38:32] 2026-04-22 20:37:44,621 | INFO     | mean y: 2376998.9843137255
[2026-04-22 22:38:32] 2026-04-22 20:37:44,621 | INFO     | intersect: 2376998.9843137255
[2026-04-22 22:38:32] 2026-04-22 20:37:44,621 | INFO     | chi2: 0.0038688413978913887
[2026-04-22 22:38:32] 2026-04-22 20:37:44,622 | INFO     | current chi2=0.0038688413978913887 (change=99.65231981228474 %)
[2026-04-22 22:38:32] 2026-04-22 20:37:44,622 | INFO     | sum of square deviations: 4844974562.5
[2026-04-22 22:38:32] 2026-04-22 20:37:44,625 | INFO     | sum of deviations: 1766857344.5000005
[2026-04-22 22:38:32] 2026-04-22 20:37:44,625 | INFO     | mean x (centered): 0.0
[2026-04-22 22:38:32] 2026-04-22 20:37:44,625 | INFO     | mean y: 2378031.332
[2026-04-22 22:38:32] 2026-04-22 20:37:44,625 | INFO     | intersect: 2378031.332
[2026-04-22 22:38:32] 2026-04-22 20:37:44,626 | INFO     | chi2: 0.001735981152265517
[2026-04-22 22:38:32] 2026-04-22 20:37:44,626 | INFO     | current chi2=0.001735981152265517 (change=55.12917243876504 %)
[2026-04-22 22:38:32] 2026-04-22 20:37:44,626 | INFO     | sum of square deviations: 4560048290.0
[2026-04-22 22:38:32] 2026-04-22 20:37:44,629 | INFO     | sum of deviations: 668491375.0000001
[2026-04-22 22:38:32] 2026-04-22 20:37:44,629 | INFO     | mean x (centered): 0.0
[2026-04-22 22:38:32] 2026-04-22 20:37:44,629 | INFO     | mean y: 2378617.47755102
[2026-04-22 22:38:32] 2026-04-22 20:37:44,629 | INFO     | intersect: 2378617.47755102
[2026-04-22 22:38:32] 2026-04-22 20:37:44,630 | INFO     | chi2: 0.0010252006303852687
[2026-04-22 22:38:32] 2026-04-22 20:37:44,630 | INFO     | current chi2=0.0010252006303852687 (change=40.94402297816739 %)
[2026-04-22 22:38:32] 2026-04-22 20:37:44,630 | INFO     | sum of square deviations: 4286517580.0
[2026-04-22 22:38:32] 2026-04-22 20:37:44,633 | INFO     | sum of deviations: 30648870.499999948
[2026-04-22 22:38:32] 2026-04-22 20:37:44,633 | INFO     | mean x (centered): 0.0
[2026-04-22 22:38:32] 2026-04-22 20:37:44,633 | INFO     | mean y: 2378972.870833333
[2026-04-22 22:38:32] 2026-04-22 20:37:44,633 | INFO     | intersect: 2378972.870833333
[2026-04-22 22:38:32] 2026-04-22 20:37:44,634 | INFO     | chi2: 0.0007776048972568847
[2026-04-22 22:38:32] 2026-04-22 20:37:44,634 | INFO     | current chi2=0.0007776048972568847 (change=24.15095404646191 %)
[2026-04-22 22:38:32] 2026-04-22 20:37:44,634 | INFO     | left removable region: 20
[2026-04-22 22:38:32] 2026-04-22 20:37:44,634 | INFO     | sum of square deviations: 3972995422.5
[2026-04-22 22:38:32] 2026-04-22 20:37:44,637 | INFO     | sum of deviations: -15990448.500000233
[2026-04-22 22:38:32] 2026-04-22 20:37:44,637 | INFO     | mean x (centered): 0.0
[2026-04-22 22:38:32] 2026-04-22 20:37:44,637 | INFO     | mean y: 2378945.730769231
[2026-04-22 22:38:32] 2026-04-22 20:37:44,637 | INFO     | intersect: 2378945.730769231
[2026-04-22 22:38:32] 2026-04-22 20:37:44,638 | INFO     | chi2: 0.0007763309667866316
[2026-04-22 22:38:32] 2026-04-22 20:37:44,638 | INFO     | current memory leak: -0.00 B/s (using 234 data points, chi2=0.00)
[2026-04-22 22:38:32] 2026-04-22 20:37:44,639 | INFO     | could have reported an average CPU frequency of 2841 MHz (12 samples)
[2026-04-22 22:38:32] 2026-04-22 20:37:44,639 | INFO     | ..............................
[2026-04-22 22:38:32] 2026-04-22 20:37:44,639 | INFO     | . Timing measurements:
[2026-04-22 22:38:32] 2026-04-22 20:37:44,639 | INFO     | . get job = 0 s
[2026-04-22 22:38:32] 2026-04-22 20:37:44,639 | INFO     | . initial setup = 0 s
[2026-04-22 22:38:32] 2026-04-22 20:37:44,639 | INFO     | . payload setup = 9 s
[2026-04-22 22:38:32] 2026-04-22 20:37:44,639 | INFO     | . stage-in = 0 s
[2026-04-22 22:38:32] 2026-04-22 20:37:44,640 | INFO     | . payload execution = 15856 s
[2026-04-22 22:38:32] 2026-04-22 20:37:44,640 | INFO     | . stage-out = 1 s
[2026-04-22 22:38:32] 2026-04-22 20:37:44,640 | INFO     | . log creation = 0 s
[2026-04-22 22:38:32] 2026-04-22 20:37:44,640 | INFO     | ..............................
[2026-04-22 22:38:32] 2026-04-22 20:37:45,218 | INFO     | 
[2026-04-22 22:38:32] 2026-04-22 20:37:45,218 | INFO     | job summary report
[2026-04-22 22:38:32] 2026-04-22 20:37:45,218 | INFO     | --------------------------------------------------
[2026-04-22 22:38:32] 2026-04-22 20:37:45,219 | INFO     | PanDA job id: 7105442434
[2026-04-22 22:38:32] 2026-04-22 20:37:45,219 | INFO     | task id: 49820375
[2026-04-22 22:38:32] 2026-04-22 20:37:45,219 | INFO     | errors: (none)
[2026-04-22 22:38:32] 2026-04-22 20:37:45,219 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-22 22:38:32] 2026-04-22 20:37:45,219 | INFO     | pilot state: finished 
[2026-04-22 22:38:32] 2026-04-22 20:37:45,219 | INFO     | transexitcode: 0
[2026-04-22 22:38:32] 2026-04-22 20:37:45,219 | INFO     | exeerrorcode: 0
[2026-04-22 22:38:32] 2026-04-22 20:37:45,219 | INFO     | exeerrordiag: 
[2026-04-22 22:38:32] 2026-04-22 20:37:45,219 | INFO     | exitcode: 0
[2026-04-22 22:38:32] 2026-04-22 20:37:45,219 | INFO     | exitmsg: OK
[2026-04-22 22:38:32] 2026-04-22 20:37:45,219 | INFO     | cpuconsumptiontime: 61622 s
[2026-04-22 22:38:32] 2026-04-22 20:37:45,219 | INFO     | nevents: 400
[2026-04-22 22:38:32] 2026-04-22 20:37:45,219 | INFO     | neventsw: 0
[2026-04-22 22:38:32] 2026-04-22 20:37:45,220 | INFO     | pid: 1038238
[2026-04-22 22:38:32] 2026-04-22 20:37:45,220 | INFO     | pgrp: 1038238
[2026-04-22 22:38:32] 2026-04-22 20:37:45,220 | INFO     | corecount: 4
[2026-04-22 22:38:32] 2026-04-22 20:37:45,220 | INFO     | event service: False
[2026-04-22 22:38:32] 2026-04-22 20:37:45,220 | INFO     | sizes: {0: 2276426, 11: 2276426, 15866: 2308524, 15869: 2317546, 15870: 2317796}
[2026-04-22 22:38:32] 2026-04-22 20:37:45,220 | INFO     | --------------------------------------------------
[2026-04-22 22:38:32] 2026-04-22 20:37:45,220 | INFO     | 
[2026-04-22 22:38:32] 2026-04-22 20:37:45,220 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot128/slots/4
[2026-04-22 22:38:32] 2026-04-22 20:37:45,245 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-22 22:38:32] 2026-04-22 20:37:45,246 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-22 22:38:32] 2026-04-22 20:37:45,246 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-22 22:38:32] 2026-04-22 20:37:45,246 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-22 22:38:32] 2026-04-22 20:37:45,248 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-22 22:38:32] 2026-04-22 20:37:45,248 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-22 22:38:32] 2026-04-22 20:37:45,248 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-22 22:38:32] 2026-04-22 20:37:45,248 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-22 22:38:32] 2026-04-22 20:37:45,248 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-22 22:38:32] 2026-04-22 20:37:45,248 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-22 22:38:32] 2026-04-22 20:37:45,248 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-22 22:38:32] 2026-04-22 20:37:45,248 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-22 22:38:32] 2026-04-22 20:37:45,249 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-22 22:38:32] 2026-04-22 20:37:45,249 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-22 22:38:32] 2026-04-22 20:37:45,249 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-22 22:38:32] 2026-04-22 20:37:45,249 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-22 22:38:32] 2026-04-22 20:37:45,249 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-22 22:38:32] 2026-04-22 20:37:45,249 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-22 22:38:32] 2026-04-22 20:37:45,249 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-22 22:38:32] 2026-04-22 20:37:45,249 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-22 22:38:32] 2026-04-22 20:37:45,249 | INFO     | job 7105442434 has completed (purged errors)
[2026-04-22 22:38:32] 2026-04-22 20:37:45,250 | INFO     | overall cleanup function is called
[2026-04-22 22:38:32] 2026-04-22 20:37:46,261 | INFO     | --- collectZombieJob: --- 10, [1038238]
[2026-04-22 22:38:32] 2026-04-22 20:37:46,262 | INFO     | zombie collector waiting for pid 1038238
[2026-04-22 22:38:32] 2026-04-22 20:37:46,262 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-22 22:38:32] 2026-04-22 20:37:46,262 | INFO     | collected zombie processes
[2026-04-22 22:38:32] 2026-04-22 20:37:46,262 | INFO     | will attempt to kill all subprocesses of pid=1038238
[2026-04-22 22:38:32] 2026-04-22 20:37:46,924 | INFO     | process IDs to be killed: [1038238] (in reverse order)
[2026-04-22 22:38:32] 2026-04-22 20:37:47,150 | WARNING  | found no corresponding commands to process id(s)
[2026-04-22 22:38:32] 2026-04-22 20:37:47,150 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-22 22:38:32] 2026-04-22 20:37:47,181 | INFO     | did not find any defunct processes belonging to 1038238
[2026-04-22 22:38:32] 2026-04-22 20:37:47,214 | INFO     | did not find any defunct processes belonging to 1038238
[2026-04-22 22:38:32] 2026-04-22 20:37:47,214 | INFO     | Ready for new job
[2026-04-22 22:38:32] 2026-04-22 20:37:47,217 | INFO     | **************************************
[2026-04-22 22:38:32] 2026-04-22 20:37:47,218 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-22 22:38:32] 2026-04-22 20:37:47,218 | INFO     | **************************************
[2026-04-22 22:38:32] 2026-04-22 20:37:47,218 | INFO     | 
[2026-04-22 22:38:32] 2026-04-22 20:37:47,228 | INFO     | architecture information:
[2026-04-22 22:38:32] 2026-04-22 20:37:47,229 | INFO     | executing command: cat /etc/os-release
[2026-04-22 22:38:32] 2026-04-22 20:37:47,251 | INFO     | cat /etc/os-release:
[2026-04-22 22:38:32] NAME="CentOS Linux"
[2026-04-22 22:38:32] VERSION="7 (Core)"
[2026-04-22 22:38:32] ID="centos"
[2026-04-22 22:38:32] ID_LIKE="rhel fedora"
[2026-04-22 22:38:32] VERSION_ID="7"
[2026-04-22 22:38:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-22 22:38:32] ANSI_COLOR="0;31"
[2026-04-22 22:38:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-22 22:38:32] HOME_URL="https://www.centos.org/"
[2026-04-22 22:38:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-22 22:38:32] 
[2026-04-22 22:38:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-22 22:38:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-22 22:38:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-22 22:38:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-22 22:38:32] 
[2026-04-22 22:38:32] 2026-04-22 20:37:47,252 | INFO     | **************************************
[2026-04-22 22:38:32] 2026-04-22 20:37:47,753 | INFO     | executing command: df -mP /var/lib/boinc/var/slot128/slots/4
[2026-04-22 22:38:32] 2026-04-22 20:37:47,773 | INFO     | sufficient remaining disk space (221369073664 B)
[2026-04-22 22:38:32] 2026-04-22 20:37:47,773 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-22 22:38:32] 2026-04-22 20:37:47,774 | INFO     | current server update state: UPDATING_FINAL
[2026-04-22 22:38:32] 2026-04-22 20:37:47,774 | INFO     | update_server=False
[2026-04-22 22:38:32] 2026-04-22 20:37:47,774 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-22 22:38:32] 2026-04-22 20:37:47,774 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-22 22:38:32] 2026-04-22 20:37:48,207 | INFO     | all data control threads have been joined
[2026-04-22 22:38:32] 2026-04-22 20:37:48,208 | INFO     | all job control threads have been joined
[2026-04-22 22:38:32] 2026-04-22 20:37:48,487 | INFO     | all payload control threads have been joined
[2026-04-22 22:38:32] 2026-04-22 20:37:48,693 | INFO     | job.realtimelogging is not enabled
[2026-04-22 22:38:32] 2026-04-22 20:37:48,753 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-22 22:38:32] 2026-04-22 20:37:48,753 | INFO     | aborting loop
[2026-04-22 22:38:32] 2026-04-22 20:37:48,779 | INFO     | [job] retrieve thread has finished
[2026-04-22 22:38:32] 2026-04-22 20:37:48,838 | INFO     | [payload] failed_post thread has finished
[2026-04-22 22:38:32] 2026-04-22 20:37:48,850 | INFO     | [payload] validate_post thread has finished
[2026-04-22 22:38:32] 2026-04-22 20:37:49,046 | INFO     | [job] validate thread has finished
[2026-04-22 22:38:32] 2026-04-22 20:37:49,213 | INFO     | [data] control thread has finished
[2026-04-22 22:38:32] 2026-04-22 20:37:49,214 | INFO     | [job] control thread has finished
[2026-04-22 22:38:32] 2026-04-22 20:37:49,493 | INFO     | [payload] control thread has finished
[2026-04-22 22:38:32] 2026-04-22 20:37:49,563 | INFO     | [payload] validate_pre thread has finished
[2026-04-22 22:38:32] 2026-04-22 20:37:49,572 | INFO     | [job] create_data_payload thread has finished
[2026-04-22 22:38:32] 2026-04-22 20:37:49,699 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-22 22:38:32] 2026-04-22 20:37:49,759 | INFO     | [job] job monitor thread has finished
[2026-04-22 22:38:32] 2026-04-22 20:37:49,780 | INFO     | [data] copytool_out thread has finished
[2026-04-22 22:38:32] 2026-04-22 20:37:49,783 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-22 22:38:32] 2026-04-22 20:37:49,809 | INFO     | [data] copytool_in thread has finished
[2026-04-22 22:38:32] 2026-04-22 20:37:49,823 | INFO     | [payload] execute_payloads thread has finished
[2026-04-22 22:38:32] 2026-04-22 20:37:50,567 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-22 22:38:32] 2026-04-22 20:37:50,788 | INFO     | [job] queue monitor thread has finished
[2026-04-22 22:38:32] 2026-04-22 20:37:54,572 | INFO     | [data] queue_monitor thread has finished
[2026-04-22 22:38:32] 2026-04-22 20:38:18,588 | INFO     | PID=1027733 has CPU usage=11.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-22 22:38:32] 2026-04-22 20:38:18,589 | INFO     | .. there are 9 such processes running
[2026-04-22 22:38:32] 2026-04-22 20:38:18,589 | INFO     | found 0 job(s) in 20 queues
[2026-04-22 22:38:32] 2026-04-22 20:38:18,589 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-22 22:38:32] 2026-04-22 20:38:18,589 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-22 22:38:32] 2026-04-22 20:38:25,701 | INFO     | [monitor] cgroup control has ended
[2026-04-22 22:38:32] 2026-04-22 20:38:26,705 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22570000267072)>', '<ExcThread(monitor, started 22569765054208)>']
[2026-04-22 22:38:32] 2026-04-22 20:38:27,634 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-22 22:38:32] 2026-04-22 20:38:27,634 | INFO     | [monitor] control thread has ended
[2026-04-22 22:38:32] 2026-04-22 20:38:31,714 | INFO     | all workflow threads have been joined
[2026-04-22 22:38:32] 2026-04-22 20:38:31,714 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-22 22:38:32] 2026-04-22 20:38:31,715 | INFO     | traces error code: 0
[2026-04-22 22:38:32] 2026-04-22 20:38:31,715 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-22 22:38:32] 2026-04-22 20:38:31,885 [wrapper] ==== pilot stdout END ====
[2026-04-22 22:38:32] 2026-04-22 20:38:31,889 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-22 22:38:32] 2026-04-22 20:38:31,893 [wrapper] pilotpid: 1027733
[2026-04-22 22:38:32] 2026-04-22 20:38:31,897 [wrapper] Pilot exit status: 0
[2026-04-22 22:38:32] 2026-04-22 20:38:31,911 [wrapper] pandaids: 7105442434 7105442434
[2026-04-22 22:38:32] 2026-04-22 20:38:32,072 [wrapper] cleanup supervisor_pilot 1313402 1027734
[2026-04-22 22:38:32] 2026-04-22 20:38:32,077 [wrapper] Test setup, not cleaning
[2026-04-22 22:38:32] 2026-04-22 20:38:32,081 [wrapper] apfmon messages muted
[2026-04-22 22:38:32] 2026-04-22 20:38:32,085 [wrapper] ==== wrapper stdout END ====
[2026-04-22 22:38:32] 2026-04-22 20:38:32,088 [wrapper] ==== wrapper stderr END ====
[2026-04-22 22:38:32]  *** Error codes and diagnostics ***
[2026-04-22 22:38:32]     "exeErrorCode": 0,
[2026-04-22 22:38:32]     "pilotErrorCode": 0,
[2026-04-22 22:38:32]  *** Listing of results directory ***
[2026-04-22 22:38:32] total 4658704
[2026-04-22 22:38:32] drwx------. 5 boinc boinc       4096 Apr  1 14:07 pilot3
[2026-04-22 22:38:32] -rwx------. 1 boinc boinc      36322 Apr 21 13:14 runpilot2-wrapper.sh
[2026-04-22 22:38:32] -rw-r--r--. 1 boinc boinc     644190 Apr 21 19:04 pilot3.tar.gz
[2026-04-22 22:38:32] -rw-r--r--. 1 boinc boinc       5094 Apr 21 19:27 queuedata.json
[2026-04-22 22:38:32] -rw-r--r--. 1 boinc boinc        100 Apr 22 16:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-22 22:38:32] -rwxr-xr-x. 1 boinc boinc       7986 Apr 22 16:51 run_atlas
[2026-04-22 22:38:32] -rw-r--r--. 1 boinc boinc        105 Apr 22 16:51 job.xml
[2026-04-22 22:38:32] -rw-r--r--. 3 boinc boinc 2241776246 Apr 22 16:51 EVNT.49820373._000035.pool.root.1
[2026-04-22 22:38:32] -rw-r--r--. 3 boinc boinc 2241776246 Apr 22 16:51 ATLAS.root_0
[2026-04-22 22:38:32] drwxrwx--x. 2 boinc boinc       4096 Apr 22 16:51 shared
[2026-04-22 22:38:32] -rw-r--r--. 2 boinc boinc     656939 Apr 22 16:51 input.tar.gz
[2026-04-22 22:38:32] -rw-r--r--. 2 boinc boinc      15665 Apr 22 16:51 start_atlas.sh
[2026-04-22 22:38:32] -rw-r--r--. 1 boinc boinc          0 Apr 22 16:51 boinc_lockfile
[2026-04-22 22:38:32] -rw-r--r--. 1 boinc boinc       2586 Apr 22 18:12 pandaJob.out
[2026-04-22 22:38:32] -rw-------. 1 boinc boinc     997117 Apr 22 18:13 agis_schedconf.cvmfs.json
[2026-04-22 22:38:32] -rw-------. 1 boinc boinc        440 Apr 22 18:13 workernode_map.json
[2026-04-22 22:38:32] -rw-r--r--. 1 boinc boinc       6620 Apr 22 18:13 init_data.xml
[2026-04-22 22:38:32] -rw-------. 1 boinc boinc  279085959 Apr 22 22:36 HITS.49820375._011259.pool.root.1
[2026-04-22 22:38:32] -rw-r--r--. 1 boinc boinc        489 Apr 22 22:36 boinc_task_state.xml
[2026-04-22 22:38:32] -rw-------. 1 boinc boinc         96 Apr 22 22:37 pilot_heartbeat.json
[2026-04-22 22:38:32] -rw-------. 1 boinc boinc       1026 Apr 22 22:37 memory_monitor_summary.json
[2026-04-22 22:38:32] -rw-------. 1 boinc boinc    1509089 Apr 22 22:37 agis_ddmendpoints.agis.ALL.json
[2026-04-22 22:38:32] -rw-------. 1 boinc boinc     468261 Apr 22 22:37 log.49820375._011259.job.log.tgz.1
[2026-04-22 22:38:32] -rw-------. 1 boinc boinc       6372 Apr 22 22:37 heartbeat_new.json
[2026-04-22 22:38:32] -rw-------. 1 boinc boinc       6263 Apr 22 22:37 heartbeat.json
[2026-04-22 22:38:32] -rw-r--r--. 1 boinc boinc       8192 Apr 22 22:38 boinc_mmap_file
[2026-04-22 22:38:32] -rw-r--r--. 1 boinc boinc         28 Apr 22 22:38 wrapper_checkpoint.txt
[2026-04-22 22:38:32] -rw-------. 1 boinc boinc       4902 Apr 22 22:38 pilotlog.txt
[2026-04-22 22:38:32] -rw-------. 1 boinc boinc    1434679 Apr 22 22:38 log.49820375._011259.job.log.1
[2026-04-22 22:38:32] -rw-------. 1 boinc boinc        357 Apr 22 22:38 output.list
[2026-04-22 22:38:32] -rw-r--r--. 1 boinc boinc        410 Apr 22 22:38 runtime_log
[2026-04-22 22:38:32] -rw-------. 1 boinc boinc    1925120 Apr 22 22:38 result.tar.gz
[2026-04-22 22:38:32] -rw-r--r--. 1 boinc boinc       8921 Apr 22 22:38 runtime_log.err
[2026-04-22 22:38:32] -rw-------. 1 boinc boinc        790 Apr 22 22:38 5bcd3b3f836f.diag
[2026-04-22 22:38:32] -rw-r--r--. 1 boinc boinc      22471 Apr 22 22:38 stderr.txt
[2026-04-22 22:38:32] HITS file was successfully produced:
[2026-04-22 22:38:32] -rw-------. 1 boinc boinc 279085959 Apr 22 22:36 shared/HITS.pool.root.1
[2026-04-22 22:38:32]  *** Contents of shared directory: ***
[2026-04-22 22:38:32] total 2464332
[2026-04-22 22:38:32] -rw-r--r--. 3 boinc boinc 2241776246 Apr 22 16:51 ATLAS.root_0
[2026-04-22 22:38:32] -rw-r--r--. 2 boinc boinc     656939 Apr 22 16:51 input.tar.gz
[2026-04-22 22:38:32] -rw-r--r--. 2 boinc boinc      15665 Apr 22 16:51 start_atlas.sh
[2026-04-22 22:38:32] -rw-------. 1 boinc boinc  279085959 Apr 22 22:36 HITS.pool.root.1
[2026-04-22 22:38:32] -rw-------. 1 boinc boinc    1925120 Apr 22 22:38 result.tar.gz
22:38:33 (1018681): run_atlas exited; CPU time 62941.340122
22:38:33 (1018681): called boinc_finish(0)

</stderr_txt>
]]>

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