Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:55:13 (3982388): wrapper (7.7.26015): starting
22:55:13 (3982388): wrapper: running run_atlas (--nthreads 4)
[2026-04-21 22:55:13] Arguments: --nthreads 4
[2026-04-21 22:55:13] Threads: 4
[2026-04-21 22:55:13] Checking for CVMFS
[2026-04-21 22:55:13] No cvmfs_config command found, will try listing directly
[2026-04-21 22:55:13] CVMFS is ok
[2026-04-21 22:55:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-21 22:55:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-21 22:55:13] Further information can be found at the LHC@home message board.
[2026-04-21 22:55:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-21 22:55:13] Checking for apptainer binary...
[2026-04-21 22:55:13] which: no apptainer in ((null))
[2026-04-21 22:55:13] apptainer is not installed, using version from CVMFS
[2026-04-21 22:55:13] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-21 22:55:14] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot48/slots/3/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2026-04-21 22:55:14] apptainer works
[2026-04-21 22:55:14] Set ATHENA_PROC_NUMBER=4
[2026-04-21 22:55:14] Set ATHENA_CORE_NUMBER=4
[2026-04-21 22:55:14] Starting ATLAS job with PandaID=7105632859
[2026-04-21 22:55:14] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot48/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-22 02:41:59]  *** The last 200 lines of the pilot log: ***
[2026-04-22 02:41:59] 2026-04-22 00:37:13,334 | INFO     | extracted standard info from prmon json
[2026-04-22 02:41:59] 2026-04-22 00:37:13,334 | INFO     | extracted standard memory fields from prmon json
[2026-04-22 02:41:59] 2026-04-22 00:37:13,335 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-22 02:41:59] 2026-04-22 00:37:13,335 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-22 02:41:59] 2026-04-22 00:37:13,339 | INFO     | fitting pss+swap vs Time
[2026-04-22 02:41:59] 2026-04-22 00:37:13,339 | INFO     | sum of square deviations: 3212467674.5
[2026-04-22 02:41:59] 2026-04-22 00:37:13,340 | INFO     | sum of deviations: 11395824007.000004
[2026-04-22 02:41:59] 2026-04-22 00:37:13,341 | INFO     | mean x (centered): 0.0
[2026-04-22 02:41:59] 2026-04-22 00:37:13,341 | INFO     | mean y: 2345671.2752293576
[2026-04-22 02:41:59] 2026-04-22 00:37:13,341 | INFO     | intersect: 2345671.2752293576
[2026-04-22 02:41:59] 2026-04-22 00:37:13,341 | INFO     | chi2: 1.9163578220239483
[2026-04-22 02:41:59] 2026-04-22 00:37:13,342 | INFO     | sum of square deviations: 2996454322.0
[2026-04-22 02:41:59] 2026-04-22 00:37:13,343 | INFO     | sum of deviations: 24802527532.0
[2026-04-22 02:41:59] 2026-04-22 00:37:13,343 | INFO     | mean x (centered): 0.0
[2026-04-22 02:41:59] 2026-04-22 00:37:13,343 | INFO     | mean y: 2354955.1690140846
[2026-04-22 02:41:59] 2026-04-22 00:37:13,343 | INFO     | intersect: 2354955.1690140846
[2026-04-22 02:41:59] 2026-04-22 00:37:13,343 | INFO     | chi2: 1.1234803619764042
[2026-04-22 02:41:59] 2026-04-22 00:37:13,344 | INFO     | current chi2=1.1234803619764042 (change=41.37418653945076 %)
[2026-04-22 02:41:59] 2026-04-22 00:37:13,344 | INFO     | sum of square deviations: 2790348132.0
[2026-04-22 02:41:59] 2026-04-22 00:37:13,345 | INFO     | sum of deviations: 24186634962.5
[2026-04-22 02:41:59] 2026-04-22 00:37:13,345 | INFO     | mean x (centered): 0.0
[2026-04-22 02:41:59] 2026-04-22 00:37:13,345 | INFO     | mean y: 2354499.3798076925
[2026-04-22 02:41:59] 2026-04-22 00:37:13,345 | INFO     | intersect: 2354499.3798076925
[2026-04-22 02:41:59] 2026-04-22 00:37:13,346 | INFO     | chi2: 1.1238853520626186
[2026-04-22 02:41:59] 2026-04-22 00:37:13,346 | INFO     | current chi2=1.1238853520626186 (change=-0.03604781177500673 %)
[2026-04-22 02:41:59] 2026-04-22 00:37:13,346 | INFO     | right removable region: 207
[2026-04-22 02:41:59] 2026-04-22 00:37:13,346 | INFO     | sum of square deviations: 2996454322.0
[2026-04-22 02:41:59] 2026-04-22 00:37:13,347 | INFO     | sum of deviations: -11955936255.0
[2026-04-22 02:41:59] 2026-04-22 00:37:13,348 | INFO     | mean x (centered): 0.0
[2026-04-22 02:41:59] 2026-04-22 00:37:13,348 | INFO     | mean y: 2361938.427230047
[2026-04-22 02:41:59] 2026-04-22 00:37:13,348 | INFO     | intersect: 2361938.427230047
[2026-04-22 02:41:59] 2026-04-22 00:37:13,348 | INFO     | chi2: 0.8112280526019059
[2026-04-22 02:41:59] 2026-04-22 00:37:13,348 | INFO     | current chi2=0.8112280526019059 (change=57.66823693995033 %)
[2026-04-22 02:41:59] 2026-04-22 00:37:13,349 | INFO     | sum of square deviations: 2790348132.0
[2026-04-22 02:41:59] 2026-04-22 00:37:13,350 | INFO     | sum of deviations: -11804815373.5
[2026-04-22 02:41:59] 2026-04-22 00:37:13,350 | INFO     | mean x (centered): 0.0
[2026-04-22 02:41:59] 2026-04-22 00:37:13,350 | INFO     | mean y: 2361821.2548076925
[2026-04-22 02:41:59] 2026-04-22 00:37:13,350 | INFO     | intersect: 2361821.2548076925
[2026-04-22 02:41:59] 2026-04-22 00:37:13,350 | INFO     | chi2: 0.8112389783609789
[2026-04-22 02:41:59] 2026-04-22 00:37:13,351 | INFO     | current chi2=0.8112389783609789 (change=-0.0013468172159454678 %)
[2026-04-22 02:41:59] 2026-04-22 00:37:13,351 | INFO     | left removable region: 10
[2026-04-22 02:41:59] 2026-04-22 00:37:13,351 | INFO     | sum of square deviations: 2370641658.0
[2026-04-22 02:41:59] 2026-04-22 00:37:13,352 | INFO     | sum of deviations: 1440657069.0
[2026-04-22 02:41:59] 2026-04-22 00:37:13,352 | INFO     | mean x (centered): 0.0
[2026-04-22 02:41:59] 2026-04-22 00:37:13,353 | INFO     | mean y: 2371902.609137056
[2026-04-22 02:41:59] 2026-04-22 00:37:13,353 | INFO     | intersect: 2371902.609137056
[2026-04-22 02:41:59] 2026-04-22 00:37:13,353 | INFO     | chi2: 0.002875910515703395
[2026-04-22 02:41:59] 2026-04-22 00:37:13,353 | INFO     | current memory leak: 0.61 B/s (using 197 data points, chi2=0.00)
[2026-04-22 02:41:59] 2026-04-22 00:37:13,353 | INFO     | could have reported an average CPU frequency of 2830 MHz (11 samples)
[2026-04-22 02:41:59] 2026-04-22 00:37:13,354 | INFO     | ..............................
[2026-04-22 02:41:59] 2026-04-22 00:37:13,354 | INFO     | . Timing measurements:
[2026-04-22 02:41:59] 2026-04-22 00:37:13,354 | INFO     | . get job = 0 s
[2026-04-22 02:41:59] 2026-04-22 00:37:13,354 | INFO     | . initial setup = 7 s
[2026-04-22 02:41:59] 2026-04-22 00:37:13,354 | INFO     | . payload setup = 12 s
[2026-04-22 02:41:59] 2026-04-22 00:37:13,354 | INFO     | . stage-in = 0 s
[2026-04-22 02:41:59] 2026-04-22 00:37:13,354 | INFO     | . payload execution = 13271 s
[2026-04-22 02:41:59] 2026-04-22 00:37:13,354 | INFO     | . stage-out = 1 s
[2026-04-22 02:41:59] 2026-04-22 00:37:13,354 | INFO     | . log creation = 0 s
[2026-04-22 02:41:59] 2026-04-22 00:37:13,354 | INFO     | ..............................
[2026-04-22 02:41:59] 2026-04-22 00:37:13,444 | INFO     | 
[2026-04-22 02:41:59] 2026-04-22 00:37:13,445 | INFO     | job summary report
[2026-04-22 02:41:59] 2026-04-22 00:37:13,445 | INFO     | --------------------------------------------------
[2026-04-22 02:41:59] 2026-04-22 00:37:13,445 | INFO     | PanDA job id: 7105632859
[2026-04-22 02:41:59] 2026-04-22 00:37:13,445 | INFO     | task id: 49820244
[2026-04-22 02:41:59] 2026-04-22 00:37:13,445 | INFO     | errors: (none)
[2026-04-22 02:41:59] 2026-04-22 00:37:13,445 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-22 02:41:59] 2026-04-22 00:37:13,445 | INFO     | pilot state: finished 
[2026-04-22 02:41:59] 2026-04-22 00:37:13,445 | INFO     | transexitcode: 0
[2026-04-22 02:41:59] 2026-04-22 00:37:13,445 | INFO     | exeerrorcode: 0
[2026-04-22 02:41:59] 2026-04-22 00:37:13,445 | INFO     | exeerrordiag: 
[2026-04-22 02:41:59] 2026-04-22 00:37:13,446 | INFO     | exitcode: 0
[2026-04-22 02:41:59] 2026-04-22 00:37:13,446 | INFO     | exitmsg: OK
[2026-04-22 02:41:59] 2026-04-22 00:37:13,446 | INFO     | cpuconsumptiontime: 51450 s
[2026-04-22 02:41:59] 2026-04-22 00:37:13,446 | INFO     | nevents: 400
[2026-04-22 02:41:59] 2026-04-22 00:37:13,446 | INFO     | neventsw: 0
[2026-04-22 02:41:59] 2026-04-22 00:37:13,446 | INFO     | pid: 4025625
[2026-04-22 02:41:59] 2026-04-22 00:37:13,446 | INFO     | pgrp: 4025625
[2026-04-22 02:41:59] 2026-04-22 00:37:13,446 | INFO     | corecount: 4
[2026-04-22 02:41:59] 2026-04-22 00:37:13,446 | INFO     | event service: False
[2026-04-22 02:41:59] 2026-04-22 00:37:13,446 | INFO     | sizes: {0: 2273919, 1: 2276416, 12: 2276416, 13286: 2307336, 13289: 2316550}
[2026-04-22 02:41:59] 2026-04-22 00:37:13,447 | INFO     | --------------------------------------------------
[2026-04-22 02:41:59] 2026-04-22 00:37:13,447 | INFO     | 
[2026-04-22 02:41:59] 2026-04-22 00:37:13,447 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot48/slots/3
[2026-04-22 02:41:59] 2026-04-22 00:37:13,479 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-22 02:41:59] 2026-04-22 00:37:13,480 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-22 02:41:59] 2026-04-22 00:37:13,480 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-22 02:41:59] 2026-04-22 00:37:13,480 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-22 02:41:59] 2026-04-22 00:37:13,480 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-22 02:41:59] 2026-04-22 00:37:13,480 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-22 02:41:59] 2026-04-22 00:37:13,480 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-22 02:41:59] 2026-04-22 00:37:13,480 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-22 02:41:59] 2026-04-22 00:37:13,481 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-22 02:41:59] 2026-04-22 00:37:13,481 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-22 02:41:59] 2026-04-22 00:37:13,481 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-22 02:41:59] 2026-04-22 00:37:13,481 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-22 02:41:59] 2026-04-22 00:37:13,481 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-22 02:41:59] 2026-04-22 00:37:13,481 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-22 02:41:59] 2026-04-22 00:37:13,481 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-22 02:41:59] 2026-04-22 00:37:13,482 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-22 02:41:59] 2026-04-22 00:37:13,482 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-22 02:41:59] 2026-04-22 00:37:13,482 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-22 02:41:59] 2026-04-22 00:37:13,482 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-22 02:41:59] 2026-04-22 00:37:13,482 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-22 02:41:59] 2026-04-22 00:37:13,482 | INFO     | job 7105632859 has completed (purged errors)
[2026-04-22 02:41:59] 2026-04-22 00:37:13,483 | INFO     | overall cleanup function is called
[2026-04-22 02:41:59] 2026-04-22 00:37:14,085 | INFO     | PID=3994940 has CPU usage=15.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-22 02:41:59] 2026-04-22 00:37:14,085 | INFO     | .. there are 11 such processes running
[2026-04-22 02:41:59] 2026-04-22 00:37:14,493 | INFO     | --- collectZombieJob: --- 10, [4025625]
[2026-04-22 02:41:59] 2026-04-22 00:37:14,493 | INFO     | zombie collector waiting for pid 4025625
[2026-04-22 02:41:59] 2026-04-22 00:37:14,493 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-22 02:41:59] 2026-04-22 00:37:14,494 | INFO     | collected zombie processes
[2026-04-22 02:41:59] 2026-04-22 00:37:14,496 | INFO     | will attempt to kill all subprocesses of pid=4025625
[2026-04-22 02:41:59] 2026-04-22 00:37:15,221 | INFO     | process IDs to be killed: [4025625] (in reverse order)
[2026-04-22 02:41:59] 2026-04-22 00:37:15,487 | WARNING  | found no corresponding commands to process id(s)
[2026-04-22 02:41:59] 2026-04-22 00:37:15,487 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-22 02:41:59] 2026-04-22 00:37:15,563 | INFO     | did not find any defunct processes belonging to 4025625
[2026-04-22 02:41:59] 2026-04-22 00:37:15,632 | INFO     | did not find any defunct processes belonging to 4025625
[2026-04-22 02:41:59] 2026-04-22 00:37:15,633 | INFO     | Ready for new job
[2026-04-22 02:41:59] 2026-04-22 00:37:15,635 | INFO     | **************************************
[2026-04-22 02:41:59] 2026-04-22 00:37:15,636 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-22 02:41:59] 2026-04-22 00:37:15,636 | INFO     | **************************************
[2026-04-22 02:41:59] 2026-04-22 00:37:15,636 | INFO     | 
[2026-04-22 02:41:59] 2026-04-22 00:37:15,648 | INFO     | architecture information:
[2026-04-22 02:41:59] 2026-04-22 00:37:15,649 | INFO     | executing command: cat /etc/os-release
[2026-04-22 02:41:59] 2026-04-22 00:37:15,674 | INFO     | cat /etc/os-release:
[2026-04-22 02:41:59] NAME="CentOS Linux"
[2026-04-22 02:41:59] VERSION="7 (Core)"
[2026-04-22 02:41:59] ID="centos"
[2026-04-22 02:41:59] ID_LIKE="rhel fedora"
[2026-04-22 02:41:59] VERSION_ID="7"
[2026-04-22 02:41:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-22 02:41:59] ANSI_COLOR="0;31"
[2026-04-22 02:41:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-22 02:41:59] HOME_URL="https://www.centos.org/"
[2026-04-22 02:41:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-22 02:41:59] 
[2026-04-22 02:41:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-22 02:41:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-22 02:41:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-22 02:41:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-22 02:41:59] 
[2026-04-22 02:41:59] 2026-04-22 00:37:15,674 | INFO     | **************************************
[2026-04-22 02:41:59] 2026-04-22 00:37:15,955 | WARNING  | process 4025625 can no longer be monitored (due to stat problems) - aborting
[2026-04-22 02:41:59] 2026-04-22 00:37:16,178 | INFO     | executing command: df -mP /var/lib/boinc/var/slot48/slots/3
[2026-04-22 02:41:59] 2026-04-22 00:37:16,202 | INFO     | sufficient remaining disk space (163953246208 B)
[2026-04-22 02:41:59] 2026-04-22 00:37:16,202 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-22 02:41:59] 2026-04-22 00:37:16,203 | INFO     | current server update state: UPDATING_FINAL
[2026-04-22 02:41:59] 2026-04-22 00:37:16,203 | INFO     | update_server=False
[2026-04-22 02:41:59] 2026-04-22 00:37:16,203 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-22 02:41:59] 2026-04-22 00:37:16,203 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-22 02:41:59] 2026-04-22 00:37:16,469 | INFO     | all data control threads have been joined
[2026-04-22 02:41:59] 2026-04-22 00:37:16,513 | INFO     | using path: /var/lib/boinc/var/slot48/slots/3/memory_monitor_summary.json (trf name=prmon)
[2026-04-22 02:41:59] 2026-04-22 00:37:17,209 | INFO     | [job] retrieve thread has finished
[2026-04-22 02:41:59] 2026-04-22 00:37:17,218 | INFO     | number of running child processes to parent process 4025625: 1
[2026-04-22 02:41:59] 2026-04-22 00:37:17,218 | INFO     | maximum number of monitored processes: 6
[2026-04-22 02:41:59] 2026-04-22 00:37:17,218 | INFO     | aborting job monitoring since job object (job id=7105632859) has expired
[2026-04-22 02:41:59] 2026-04-22 00:37:17,218 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-22 02:41:59] 2026-04-22 00:37:17,218 | INFO     | will abort loop
[2026-04-22 02:41:59] 2026-04-22 00:37:17,256 | INFO     | [payload] execute_payloads thread has finished
[2026-04-22 02:41:59] 2026-04-22 00:37:17,270 | INFO     | all job control threads have been joined
[2026-04-22 02:41:59] 2026-04-22 00:37:17,288 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-22 02:41:59] 2026-04-22 00:37:17,476 | INFO     | [data] control thread has finished
[2026-04-22 02:41:59] 2026-04-22 00:37:17,692 | INFO     | all payload control threads have been joined
[2026-04-22 02:41:59] 2026-04-22 00:37:17,770 | INFO     | [payload] validate_post thread has finished
[2026-04-22 02:41:59] 2026-04-22 00:37:18,028 | INFO     | [payload] failed_post thread has finished
[2026-04-22 02:41:59] 2026-04-22 00:37:18,099 | INFO     | [job] validate thread has finished
[2026-04-22 02:41:59] 2026-04-22 00:37:18,210 | INFO     | [data] copytool_out thread has finished
[2026-04-22 02:41:59] 2026-04-22 00:37:18,224 | INFO     | [job] job monitor thread has finished
[2026-04-22 02:41:59] 2026-04-22 00:37:18,267 | INFO     | [job] create_data_payload thread has finished
[2026-04-22 02:41:59] 2026-04-22 00:37:18,276 | INFO     | [job] control thread has finished
[2026-04-22 02:41:59] 2026-04-22 00:37:18,337 | INFO     | [payload] validate_pre thread has finished
[2026-04-22 02:41:59] 2026-04-22 00:37:18,455 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-22 02:41:59] 2026-04-22 00:37:18,692 | INFO     | [data] copytool_in thread has finished
[2026-04-22 02:41:59] 2026-04-22 00:37:18,697 | INFO     | [payload] control thread has finished
[2026-04-22 02:41:59] 2026-04-22 00:37:19,216 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-22 02:41:59] 2026-04-22 00:37:19,461 | INFO     | [job] queue monitor thread has finished
[2026-04-22 02:41:59] 2026-04-22 00:37:23,223 | INFO     | [data] queue_monitor thread has finished
[2026-04-22 02:41:59] 2026-04-22 00:37:46,957 | INFO     | PID=3994940 has CPU usage=11.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-22 02:41:59] 2026-04-22 00:37:46,958 | INFO     | .. there are 11 such processes running
[2026-04-22 02:41:59] 2026-04-22 00:37:46,958 | INFO     | found 0 job(s) in 20 queues
[2026-04-22 02:41:59] 2026-04-22 00:37:46,958 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-22 02:41:59] 2026-04-22 00:37:46,959 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-22 02:41:59] 2026-04-22 00:37:51,515 | INFO     | [monitor] cgroup control has ended
[2026-04-22 02:41:59] 2026-04-22 00:37:52,909 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23233170454336)>', '<ExcThread(monitor, started 23232930653952)>']
[2026-04-22 02:41:59] 2026-04-22 00:37:52,989 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-22 02:41:59] 2026-04-22 00:37:52,989 | INFO     | [monitor] control thread has ended
[2026-04-22 02:41:59] 2026-04-22 00:37:57,913 | INFO     | all workflow threads have been joined
[2026-04-22 02:41:59] 2026-04-22 00:37:57,913 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-22 02:41:59] 2026-04-22 00:37:57,913 | INFO     | traces error code: 0
[2026-04-22 02:41:59] 2026-04-22 00:37:57,914 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-22 02:41:59] 2026-04-22 00:37:58,090 [wrapper] ==== pilot stdout END ====
[2026-04-22 02:41:59] 2026-04-22 00:37:58,094 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-22 02:41:59] 2026-04-22 00:37:58,097 [wrapper] pilotpid: 3994940
[2026-04-22 02:41:59] 2026-04-22 00:37:58,101 [wrapper] Pilot exit status: 0
[2026-04-22 02:41:59] 2026-04-22 00:37:58,113 [wrapper] pandaids: 7105632859
[2026-04-22 02:41:59] 2026-04-22 00:37:58,246 [wrapper] cleanup supervisor_pilot  151290 3994941
[2026-04-22 02:41:59] 2026-04-22 00:37:58,251 [wrapper] Test setup, not cleaning
[2026-04-22 02:41:59] 2026-04-22 00:37:58,255 [wrapper] apfmon messages muted
[2026-04-22 02:41:59] 2026-04-22 00:37:58,259 [wrapper] ==== wrapper stdout END ====
[2026-04-22 02:41:59] 2026-04-22 00:37:58,262 [wrapper] ==== wrapper stderr END ====
[2026-04-22 02:41:59]  *** Error codes and diagnostics ***
[2026-04-22 02:41:59]     "exeErrorCode": 0,
[2026-04-22 02:41:59]     "pilotErrorCode": 0,
[2026-04-22 02:41:59]  *** Listing of results directory ***
[2026-04-22 02:41:59] total 2454364
[2026-04-22 02:41:59] -rwx------. 1 boinc boinc      36322 Apr 21 13:09 runpilot2-wrapper.sh
[2026-04-22 02:41:59] -rw-r--r--. 1 boinc boinc     644190 Apr 21 19:04 pilot3.tar.gz
[2026-04-22 02:41:59] -rw-r--r--. 1 boinc boinc       5094 Apr 21 19:27 queuedata.json
[2026-04-22 02:41:59] -rw-r--r--. 1 boinc boinc        100 Apr 21 22:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-22 02:41:59] -rwxr-xr-x. 1 boinc boinc       7986 Apr 21 22:55 run_atlas
[2026-04-22 02:41:59] -rw-r--r--. 1 boinc boinc        105 Apr 21 22:55 job.xml
[2026-04-22 02:41:59] -rw-r--r--. 1 boinc boinc       6539 Apr 21 22:55 init_data.xml
[2026-04-22 02:41:59] -rw-r--r--. 2 boinc boinc 2234063887 Apr 21 22:55 EVNT.49820242._000045.pool.root.1
[2026-04-22 02:41:59] -rw-r--r--. 2 boinc boinc      15665 Apr 21 22:55 start_atlas.sh
[2026-04-22 02:41:59] drwxrwx--x. 2 boinc boinc       4096 Apr 21 22:55 shared
[2026-04-22 02:41:59] -rw-r--r--. 2 boinc boinc     656925 Apr 21 22:55 input.tar.gz
[2026-04-22 02:41:59] -rw-r--r--. 1 boinc boinc          0 Apr 21 22:55 boinc_lockfile
[2026-04-22 02:41:59] -rw-r--r--. 1 boinc boinc       2550 Apr 21 22:55 pandaJob.out
[2026-04-22 02:41:59] -rw-------. 1 boinc boinc     997082 Apr 21 22:55 agis_schedconf.cvmfs.json
[2026-04-22 02:41:59] -rw-------. 1 boinc boinc        443 Apr 21 22:55 workernode_map.json
[2026-04-22 02:41:59] drwx------. 5 boinc boinc       4096 Apr 21 22:55 pilot3
[2026-04-22 02:41:59] -rw-------. 1 boinc boinc  272032287 Apr 22 02:36 HITS.49820244._015303.pool.root.1
[2026-04-22 02:41:59] -rw-r--r--. 1 boinc boinc        487 Apr 22 02:36 boinc_task_state.xml
[2026-04-22 02:41:59] -rw-------. 1 boinc boinc       1031 Apr 22 02:37 memory_monitor_summary.json
[2026-04-22 02:41:59] -rw-------. 1 boinc boinc    1509089 Apr 22 02:37 agis_ddmendpoints.agis.ALL.json
[2026-04-22 02:41:59] -rw-------. 1 boinc boinc     325696 Apr 22 02:37 log.49820244._015303.job.log.tgz.1
[2026-04-22 02:41:59] -rw-------. 1 boinc boinc       6369 Apr 22 02:37 heartbeat_new.json
[2026-04-22 02:41:59] -rw-------. 1 boinc boinc       6260 Apr 22 02:37 heartbeat.json
[2026-04-22 02:41:59] -rw-------. 1 boinc boinc         95 Apr 22 02:37 pilot_heartbeat.json
[2026-04-22 02:41:59] -rw-------. 1 boinc boinc       5362 Apr 22 02:37 pilotlog.txt
[2026-04-22 02:41:59] -rw-------. 1 boinc boinc    1232463 Apr 22 02:37 log.49820244._015303.job.log.1
[2026-04-22 02:41:59] -rw-------. 1 boinc boinc        357 Apr 22 02:37 output.list
[2026-04-22 02:41:59] -rw-r--r--. 1 boinc boinc        410 Apr 22 02:37 runtime_log
[2026-04-22 02:41:59] -rw-------. 1 boinc boinc    1576960 Apr 22 02:37 result.tar.gz
[2026-04-22 02:41:59] -rw-r--r--. 1 boinc boinc       8827 Apr 22 02:37 runtime_log.err
[2026-04-22 02:41:59] -rw-------. 1 boinc boinc        665 Apr 22 02:37 5afb5ca6e4be.diag
[2026-04-22 02:41:59] -rw-r--r--. 1 boinc boinc         26 Apr 22 02:41 wrapper_checkpoint.txt
[2026-04-22 02:41:59] -rw-r--r--. 1 boinc boinc       8192 Apr 22 02:41 boinc_mmap_file
[2026-04-22 02:41:59] -rw-r--r--. 1 boinc boinc      20849 Apr 22 02:41 stderr.txt
[2026-04-22 02:42:00] HITS file was successfully produced:
[2026-04-22 02:42:00] -rw-------. 1 boinc boinc 272032287 Apr 22 02:36 shared/HITS.pool.root.1
[2026-04-22 02:42:00]  *** Contents of shared directory: ***
[2026-04-22 02:42:00] total 2449572
[2026-04-22 02:42:00] -rw-r--r--. 2 boinc boinc 2234063887 Apr 21 22:55 ATLAS.root_0
[2026-04-22 02:42:00] -rw-r--r--. 2 boinc boinc      15665 Apr 21 22:55 start_atlas.sh
[2026-04-22 02:42:00] -rw-r--r--. 2 boinc boinc     656925 Apr 21 22:55 input.tar.gz
[2026-04-22 02:42:00] -rw-------. 1 boinc boinc  272032287 Apr 22 02:36 HITS.pool.root.1
[2026-04-22 02:42:00] -rw-------. 1 boinc boinc    1576960 Apr 22 02:37 result.tar.gz
02:42:01 (3982388): run_atlas exited; CPU time 52287.508820
02:42:01 (3982388): called boinc_finish(0)

</stderr_txt>
]]>

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