Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:20:27 (29427): wrapper (7.7.26015): starting
06:20:27 (29427): wrapper: running run_atlas (--nthreads 8)
[2026-04-22 06:20:27] Arguments: --nthreads 8
[2026-04-22 06:20:27] Threads: 8
[2026-04-22 06:20:27] Checking for CVMFS
[2026-04-22 06:20:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-22 06:20:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-22 06:20:31] Running cvmfs_config stat atlas.cern.ch
[2026-04-22 06:20:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-22 06:20:33] 2.11.2.0 16103 9301 97724 158715 2 104 15074020 25165825 541 130560 0 2603479 99.882 4189691 19677 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-22 06:20:33] CVMFS is ok
[2026-04-22 06:20:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-22 06:20:33] Checking for apptainer binary...
[2026-04-22 06:20:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-22 06:20:33] Running /usr/bin/apptainer --version
[2026-04-22 06:20:33] apptainer version 1.3.2-1.el7
[2026-04-22 06:20:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-22 06:20:43] cg-vwn420.simple-grid.lan
[2026-04-22 06:20:43] apptainer works
[2026-04-22 06:20:43] Set ATHENA_PROC_NUMBER=8
[2026-04-22 06:20:43] Set ATHENA_CORE_NUMBER=8
[2026-04-22 06:20:44] Starting ATLAS job with PandaID=7105447542
[2026-04-22 06:20:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-22 11:31:41]  *** The last 200 lines of the pilot log: ***
[2026-04-22 11:31:41] 2026-04-22 09:30:36,899 | INFO     | log transfer has been attempted: DONE
[2026-04-22 11:31:41] 2026-04-22 09:30:36,899 | INFO     | job 7105447542 has finished - writing final server update
[2026-04-22 11:31:41] 2026-04-22 09:30:36,900 | INFO     | total number of processed events: 400 (read)
[2026-04-22 11:31:41] 2026-04-22 09:30:36,902 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-7105447542/memory_monitor_summary.json (trf name=prmon)
[2026-04-22 11:31:41] 2026-04-22 09:30:36,902 | INFO     | extracted standard info from prmon json
[2026-04-22 11:31:41] 2026-04-22 09:30:36,902 | INFO     | extracted standard memory fields from prmon json
[2026-04-22 11:31:41] 2026-04-22 09:30:36,903 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-22 11:31:41] 2026-04-22 09:30:36,903 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-22 11:31:41] 2026-04-22 09:30:36,909 | INFO     | fitting pss+swap vs Time
[2026-04-22 11:31:41] 2026-04-22 09:30:36,909 | INFO     | sum of square deviations: 7879803557.5
[2026-04-22 11:31:41] 2026-04-22 09:30:36,912 | INFO     | sum of deviations: 108041665178.99998
[2026-04-22 11:31:41] 2026-04-22 09:30:36,913 | INFO     | mean x (centered): 0.0
[2026-04-22 11:31:41] 2026-04-22 09:30:36,913 | INFO     | mean y: 2508069.1768707484
[2026-04-22 11:31:41] 2026-04-22 09:30:36,913 | INFO     | intersect: 2508069.1768707484
[2026-04-22 11:31:41] 2026-04-22 09:30:36,914 | INFO     | chi2: 7.881307695568587
[2026-04-22 11:31:41] 2026-04-22 09:30:36,914 | INFO     | sum of square deviations: 7484568240.0
[2026-04-22 11:31:41] 2026-04-22 09:30:36,917 | INFO     | sum of deviations: 125618060364.99994
[2026-04-22 11:31:41] 2026-04-22 09:30:36,917 | INFO     | mean x (centered): 0.0
[2026-04-22 11:31:41] 2026-04-22 09:30:36,917 | INFO     | mean y: 2514744.723183391
[2026-04-22 11:31:41] 2026-04-22 09:30:36,918 | INFO     | intersect: 2514744.723183391
[2026-04-22 11:31:41] 2026-04-22 09:30:36,918 | INFO     | chi2: 7.176113007218777
[2026-04-22 11:31:41] 2026-04-22 09:30:36,918 | INFO     | current chi2=7.176113007218777 (change=8.947686292546598 %)
[2026-04-22 11:31:41] 2026-04-22 09:30:36,918 | INFO     | right removable region: 288
[2026-04-22 11:31:41] 2026-04-22 09:30:36,919 | INFO     | sum of square deviations: 7484568240.0
[2026-04-22 11:31:41] 2026-04-22 09:30:36,921 | INFO     | sum of deviations: -691013550.9999924
[2026-04-22 11:31:41] 2026-04-22 09:30:36,922 | INFO     | mean x (centered): 0.0
[2026-04-22 11:31:41] 2026-04-22 09:30:36,922 | INFO     | mean y: 2550009.633217993
[2026-04-22 11:31:41] 2026-04-22 09:30:36,922 | INFO     | intersect: 2550009.633217993
[2026-04-22 11:31:41] 2026-04-22 09:30:36,922 | INFO     | chi2: 2.6941813699011483
[2026-04-22 11:31:41] 2026-04-22 09:30:36,922 | INFO     | current chi2=2.6941813699011483 (change=65.81555404294134 %)
[2026-04-22 11:31:41] 2026-04-22 09:30:36,923 | INFO     | sum of square deviations: 7102775035.0
[2026-04-22 11:31:41] 2026-04-22 09:30:36,926 | INFO     | sum of deviations: -57754566644.50001
[2026-04-22 11:31:41] 2026-04-22 09:30:36,926 | INFO     | mean x (centered): 0.0
[2026-04-22 11:31:41] 2026-04-22 09:30:36,926 | INFO     | mean y: 2572692.954225352
[2026-04-22 11:31:41] 2026-04-22 09:30:36,926 | INFO     | intersect: 2572692.954225352
[2026-04-22 11:31:41] 2026-04-22 09:30:36,927 | INFO     | chi2: 0.9828096829369574
[2026-04-22 11:31:41] 2026-04-22 09:30:36,927 | INFO     | current chi2=0.9828096829369574 (change=63.521027429084434 %)
[2026-04-22 11:31:41] 2026-04-22 09:30:36,927 | INFO     | sum of square deviations: 6734191380.0
[2026-04-22 11:31:41] 2026-04-22 09:30:36,930 | INFO     | sum of deviations: -59942812538.0
[2026-04-22 11:31:41] 2026-04-22 09:30:36,930 | INFO     | mean x (centered): 0.0
[2026-04-22 11:31:41] 2026-04-22 09:30:36,930 | INFO     | mean y: 2573578.064516129
[2026-04-22 11:31:41] 2026-04-22 09:30:36,930 | INFO     | intersect: 2573578.064516129
[2026-04-22 11:31:41] 2026-04-22 09:30:36,931 | INFO     | chi2: 0.9624676800644436
[2026-04-22 11:31:41] 2026-04-22 09:30:36,931 | INFO     | current chi2=0.9624676800644436 (change=2.069780469777748 %)
[2026-04-22 11:31:41] 2026-04-22 09:30:36,931 | INFO     | left removable region: 15
[2026-04-22 11:31:41] 2026-04-22 09:30:36,932 | INFO     | sum of square deviations: 6309000152.0
[2026-04-22 11:31:41] 2026-04-22 09:30:36,934 | INFO     | sum of deviations: -40413068337.0
[2026-04-22 11:31:41] 2026-04-22 09:30:36,935 | INFO     | mean x (centered): 0.0
[2026-04-22 11:31:41] 2026-04-22 09:30:36,935 | INFO     | mean y: 2581835.8388278387
[2026-04-22 11:31:41] 2026-04-22 09:30:36,935 | INFO     | intersect: 2581835.8388278387
[2026-04-22 11:31:41] 2026-04-22 09:30:36,935 | INFO     | chi2: 0.1796631313669121
[2026-04-22 11:31:41] 2026-04-22 09:30:36,936 | INFO     | current memory leak: -6.41 B/s (using 273 data points, chi2=0.18)
[2026-04-22 11:31:41] 2026-04-22 09:30:36,936 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2026-04-22 11:31:41] 2026-04-22 09:30:36,936 | INFO     | ..............................
[2026-04-22 11:31:41] 2026-04-22 09:30:36,937 | INFO     | . Timing measurements:
[2026-04-22 11:31:41] 2026-04-22 09:30:36,937 | INFO     | . get job = 0 s
[2026-04-22 11:31:41] 2026-04-22 09:30:36,937 | INFO     | . initial setup = 119 s
[2026-04-22 11:31:41] 2026-04-22 09:30:36,937 | INFO     | . payload setup = 165 s
[2026-04-22 11:31:41] 2026-04-22 09:30:36,937 | INFO     | . stage-in = 0 s
[2026-04-22 11:31:41] 2026-04-22 09:30:36,937 | INFO     | . payload execution = 18023 s
[2026-04-22 11:31:41] 2026-04-22 09:30:36,937 | INFO     | . stage-out = 1 s
[2026-04-22 11:31:41] 2026-04-22 09:30:36,937 | INFO     | . log creation = 0 s
[2026-04-22 11:31:41] 2026-04-22 09:30:36,937 | INFO     | ..............................
[2026-04-22 11:31:41] 2026-04-22 09:30:37,078 | INFO     | 
[2026-04-22 11:31:41] 2026-04-22 09:30:37,078 | INFO     | job summary report
[2026-04-22 11:31:41] 2026-04-22 09:30:37,078 | INFO     | --------------------------------------------------
[2026-04-22 11:31:41] 2026-04-22 09:30:37,078 | INFO     | PanDA job id: 7105447542
[2026-04-22 11:31:41] 2026-04-22 09:30:37,078 | INFO     | task id: 49820244
[2026-04-22 11:31:41] 2026-04-22 09:30:37,079 | INFO     | errors: (none)
[2026-04-22 11:31:41] 2026-04-22 09:30:37,079 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-22 11:31:41] 2026-04-22 09:30:37,079 | INFO     | pilot state: finished 
[2026-04-22 11:31:41] 2026-04-22 09:30:37,079 | INFO     | transexitcode: 0
[2026-04-22 11:31:41] 2026-04-22 09:30:37,079 | INFO     | exeerrorcode: 0
[2026-04-22 11:31:41] 2026-04-22 09:30:37,079 | INFO     | exeerrordiag: 
[2026-04-22 11:31:41] 2026-04-22 09:30:37,079 | INFO     | exitcode: 0
[2026-04-22 11:31:41] 2026-04-22 09:30:37,079 | INFO     | exitmsg: OK
[2026-04-22 11:31:41] 2026-04-22 09:30:37,079 | INFO     | cpuconsumptiontime: 87360 s
[2026-04-22 11:31:41] 2026-04-22 09:30:37,080 | INFO     | nevents: 400
[2026-04-22 11:31:41] 2026-04-22 09:30:37,080 | INFO     | neventsw: 0
[2026-04-22 11:31:41] 2026-04-22 09:30:37,080 | INFO     | pid: 5615
[2026-04-22 11:31:41] 2026-04-22 09:30:37,080 | INFO     | pgrp: 5615
[2026-04-22 11:31:41] 2026-04-22 09:30:37,080 | INFO     | corecount: 8
[2026-04-22 11:31:41] 2026-04-22 09:30:37,080 | INFO     | event service: False
[2026-04-22 11:31:41] 2026-04-22 09:30:37,080 | INFO     | sizes: {0: 2273921, 1: 2274606, 2: 2276435, 13: 2276435, 18192: 2308961, 18193: 2308960, 18194: 2318142, 18198: 2318198, 18199: 2318392}
[2026-04-22 11:31:41] 2026-04-22 09:30:37,080 | INFO     | --------------------------------------------------
[2026-04-22 11:31:41] 2026-04-22 09:30:37,080 | INFO     | 
[2026-04-22 11:31:41] 2026-04-22 09:30:37,081 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2026-04-22 11:31:41] 2026-04-22 09:30:37,110 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-22 11:31:41] 2026-04-22 09:30:37,110 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-22 11:31:41] 2026-04-22 09:30:37,110 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-22 11:31:41] 2026-04-22 09:30:37,110 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-22 11:31:41] 2026-04-22 09:30:37,110 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-22 11:31:41] 2026-04-22 09:30:37,110 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-22 11:31:41] 2026-04-22 09:30:37,110 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-22 11:31:41] 2026-04-22 09:30:37,110 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-22 11:31:41] 2026-04-22 09:30:37,111 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-22 11:31:41] 2026-04-22 09:30:37,111 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-22 11:31:41] 2026-04-22 09:30:37,111 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-22 11:31:41] 2026-04-22 09:30:37,111 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-22 11:31:41] 2026-04-22 09:30:37,111 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-22 11:31:41] 2026-04-22 09:30:37,111 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-22 11:31:41] 2026-04-22 09:30:37,111 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-22 11:31:41] 2026-04-22 09:30:37,111 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-22 11:31:41] 2026-04-22 09:30:37,111 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-22 11:31:41] 2026-04-22 09:30:37,111 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-22 11:31:41] 2026-04-22 09:30:37,111 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-22 11:31:41] 2026-04-22 09:30:37,112 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-22 11:31:41] 2026-04-22 09:30:37,112 | INFO     | job 7105447542 has completed (purged errors)
[2026-04-22 11:31:41] 2026-04-22 09:30:37,112 | INFO     | overall cleanup function is called
[2026-04-22 11:31:41] 2026-04-22 09:30:38,120 | INFO     | --- collectZombieJob: --- 10, [5615]
[2026-04-22 11:31:41] 2026-04-22 09:30:38,121 | INFO     | zombie collector waiting for pid 5615
[2026-04-22 11:31:41] 2026-04-22 09:30:38,121 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-22 11:31:41] 2026-04-22 09:30:38,121 | INFO     | collected zombie processes
[2026-04-22 11:31:41] 2026-04-22 09:30:38,121 | INFO     | will attempt to kill all subprocesses of pid=5615
[2026-04-22 11:31:41] 2026-04-22 09:30:38,184 | INFO     | process IDs to be killed: [5615] (in reverse order)
[2026-04-22 11:31:41] 2026-04-22 09:30:38,230 | WARNING  | found no corresponding commands to process id(s)
[2026-04-22 11:31:41] 2026-04-22 09:30:38,230 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-22 11:31:41] 2026-04-22 09:30:38,232 | INFO     | did not find any defunct processes belonging to 5615
[2026-04-22 11:31:41] 2026-04-22 09:30:38,234 | INFO     | did not find any defunct processes belonging to 5615
[2026-04-22 11:31:41] 2026-04-22 09:30:38,234 | INFO     | Ready for new job
[2026-04-22 11:31:41] 2026-04-22 09:30:38,236 | INFO     | **************************************
[2026-04-22 11:31:41] 2026-04-22 09:30:38,236 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-22 11:31:41] 2026-04-22 09:30:38,236 | INFO     | **************************************
[2026-04-22 11:31:41] 2026-04-22 09:30:38,236 | INFO     | 
[2026-04-22 11:31:41] 2026-04-22 09:30:38,237 | INFO     | pilot is running in a VM
[2026-04-22 11:31:41] 2026-04-22 09:30:38,237 | INFO     | architecture information:
[2026-04-22 11:31:41] 2026-04-22 09:30:38,238 | INFO     | executing command: cat /etc/os-release
[2026-04-22 11:31:41] 2026-04-22 09:30:38,254 | INFO     | cat /etc/os-release:
[2026-04-22 11:31:41] NAME="CentOS Linux"
[2026-04-22 11:31:41] VERSION="7 (Core)"
[2026-04-22 11:31:41] ID="centos"
[2026-04-22 11:31:41] ID_LIKE="rhel fedora"
[2026-04-22 11:31:41] VERSION_ID="7"
[2026-04-22 11:31:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-22 11:31:41] ANSI_COLOR="0;31"
[2026-04-22 11:31:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-22 11:31:41] HOME_URL="https://www.centos.org/"
[2026-04-22 11:31:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-22 11:31:41] 
[2026-04-22 11:31:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-22 11:31:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-22 11:31:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-22 11:31:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-22 11:31:41] 
[2026-04-22 11:31:41] 2026-04-22 09:30:38,255 | INFO     | **************************************
[2026-04-22 11:31:41] 2026-04-22 09:30:38,757 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2026-04-22 11:31:41] 2026-04-22 09:30:38,774 | INFO     | sufficient remaining disk space (493837352960 B)
[2026-04-22 11:31:41] 2026-04-22 09:30:38,774 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-22 11:31:41] 2026-04-22 09:30:38,774 | INFO     | current server update state: UPDATING_FINAL
[2026-04-22 11:31:41] 2026-04-22 09:30:38,775 | INFO     | update_server=False
[2026-04-22 11:31:41] 2026-04-22 09:30:38,775 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-22 11:31:41] 2026-04-22 09:30:38,775 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-22 11:31:41] 2026-04-22 09:30:38,775 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-22 11:31:41] 2026-04-22 09:30:38,811 | INFO     | all job control threads have been joined
[2026-04-22 11:31:41] 2026-04-22 09:30:38,827 | INFO     | all data control threads have been joined
[2026-04-22 11:31:41] 2026-04-22 09:30:38,944 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-22 11:31:41] 2026-04-22 09:30:38,945 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-22 11:31:41] 2026-04-22 09:30:38,945 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-22 11:31:41] 2026-04-22 09:30:38,945 | INFO     | will abort loop
[2026-04-22 11:31:41] 2026-04-22 09:30:39,776 | INFO     | [job] retrieve thread has finished
[2026-04-22 11:31:41] 2026-04-22 09:30:39,781 | INFO     | [job] queue monitor thread has finished
[2026-04-22 11:31:41] 2026-04-22 09:30:39,786 | INFO     | all payload control threads have been joined
[2026-04-22 11:31:41] 2026-04-22 09:30:39,813 | INFO     | [job] control thread has finished
[2026-04-22 11:31:41] 2026-04-22 09:30:39,833 | INFO     | [data] control thread has finished
[2026-04-22 11:31:41] 2026-04-22 09:30:39,899 | INFO     | [payload] validate_post thread has finished
[2026-04-22 11:31:41] 2026-04-22 09:30:39,950 | INFO     | [job] job monitor thread has finished
[2026-04-22 11:31:41] 2026-04-22 09:30:39,981 | INFO     | [job] create_data_payload thread has finished
[2026-04-22 11:31:41] 2026-04-22 09:30:40,352 | INFO     | [payload] execute_payloads thread has finished
[2026-04-22 11:31:41] 2026-04-22 09:30:40,394 | INFO     | [job] validate thread has finished
[2026-04-22 11:31:41] 2026-04-22 09:30:40,635 | INFO     | [payload] failed_post thread has finished
[2026-04-22 11:31:41] 2026-04-22 09:30:40,666 | INFO     | [data] copytool_in thread has finished
[2026-04-22 11:31:41] 2026-04-22 09:30:40,780 | INFO     | [data] copytool_out thread has finished
[2026-04-22 11:31:41] 2026-04-22 09:30:40,791 | INFO     | [payload] control thread has finished
[2026-04-22 11:31:41] 2026-04-22 09:30:40,958 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-22 11:31:41] 2026-04-22 09:30:41,157 | INFO     | [payload] validate_pre thread has finished
[2026-04-22 11:31:41] 2026-04-22 09:30:41,626 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-22 11:31:41] 2026-04-22 09:30:45,632 | INFO     | [data] queue_monitor thread has finished
[2026-04-22 11:31:41] 2026-04-22 09:31:09,139 | INFO     | PID=1089 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-04-22 11:31:41] 2026-04-22 09:31:09,139 | INFO     | .. there are 2 such processes running
[2026-04-22 11:31:41] 2026-04-22 09:31:09,139 | INFO     | found 0 job(s) in 20 queues
[2026-04-22 11:31:41] 2026-04-22 09:31:09,139 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-22 11:31:41] 2026-04-22 09:31:09,139 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-22 11:31:41] 2026-04-22 09:31:35,176 | INFO     | [monitor] cgroup control has ended
[2026-04-22 11:31:41] 2026-04-22 09:31:36,006 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140132535236416)>', '<ExcThread(monitor, started 140132316919552)>']
[2026-04-22 11:31:41] 2026-04-22 09:31:36,279 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-22 11:31:41] 2026-04-22 09:31:36,279 | INFO     | [monitor] control thread has ended
[2026-04-22 11:31:41] 2026-04-22 09:31:41,028 | INFO     | all workflow threads have been joined
[2026-04-22 11:31:41] 2026-04-22 09:31:41,028 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-22 11:31:41] 2026-04-22 09:31:41,028 | INFO     | traces error code: 0
[2026-04-22 11:31:41] 2026-04-22 09:31:41,029 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-22 11:31:41] 2026-04-22 09:31:41,167 [wrapper] ==== pilot stdout END ====
[2026-04-22 11:31:41] 2026-04-22 09:31:41,173 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-22 11:31:41] 2026-04-22 09:31:41,176 [wrapper] pilotpid: 1089
[2026-04-22 11:31:41] 2026-04-22 09:31:41,181 [wrapper] Pilot exit status: 0
[2026-04-22 11:31:41] 2026-04-22 09:31:41,201 [wrapper] pandaids: 7105447542
[2026-04-22 11:31:41] 2026-04-22 09:31:41,236 [wrapper] cleanup supervisor_pilot 14002 1090
[2026-04-22 11:31:41] 2026-04-22 09:31:41,242 [wrapper] Test setup, not cleaning
[2026-04-22 11:31:41] 2026-04-22 09:31:41,249 [wrapper] apfmon messages muted
[2026-04-22 11:31:41] 2026-04-22 09:31:41,253 [wrapper] ==== wrapper stdout END ====
[2026-04-22 11:31:41] 2026-04-22 09:31:41,256 [wrapper] ==== wrapper stderr END ====
[2026-04-22 11:31:41]  *** Error codes and diagnostics ***
[2026-04-22 11:31:41]     "exeErrorCode": 0,
[2026-04-22 11:31:41]     "pilotErrorCode": 0,
[2026-04-22 11:31:41]  *** Listing of results directory ***
[2026-04-22 11:31:41] total 2442316
[2026-04-22 11:31:41] -rwx------. 1 boinc boinc      36322 Apr 21 13:08 runpilot2-wrapper.sh
[2026-04-22 11:31:41] -rw-r--r--. 1 boinc boinc     644190 Apr 21 19:04 pilot3.tar.gz
[2026-04-22 11:31:41] -rw-r--r--. 1 boinc boinc       5094 Apr 21 19:27 queuedata.json
[2026-04-22 11:31:41] -rw-r--r--. 1 boinc boinc        100 Apr 22 06:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-22 11:31:41] -rwxr-xr-x. 1 boinc boinc       7986 Apr 22 06:20 run_atlas
[2026-04-22 11:31:41] -rw-r--r--. 1 boinc boinc        105 Apr 22 06:20 job.xml
[2026-04-22 11:31:41] -rw-r--r--. 1 boinc boinc       6306 Apr 22 06:20 init_data.xml
[2026-04-22 11:31:41] -rw-r--r--. 2 boinc boinc 2217988995 Apr 22 06:20 EVNT.49820242._000041.pool.root.1
[2026-04-22 11:31:41] -rw-r--r--. 2 boinc boinc      15665 Apr 22 06:20 start_atlas.sh
[2026-04-22 11:31:41] drwxrwx--x. 2 boinc boinc         68 Apr 22 06:20 shared
[2026-04-22 11:31:41] -rw-r--r--. 2 boinc boinc     656926 Apr 22 06:20 input.tar.gz
[2026-04-22 11:31:41] -rw-r--r--. 1 boinc boinc          0 Apr 22 06:20 boinc_lockfile
[2026-04-22 11:31:41] -rw-r--r--. 1 boinc boinc       2551 Apr 22 06:20 pandaJob.out
[2026-04-22 11:31:41] -rw-------. 1 boinc boinc        415 Apr 22 06:26 workernode_map.json
[2026-04-22 11:31:41] -rw-------. 1 boinc boinc     997066 Apr 22 06:27 agis_schedconf.cvmfs.json
[2026-04-22 11:31:41] drwx------. 5 boinc boinc       4096 Apr 22 06:27 pilot3
[2026-04-22 11:31:41] -rw-------. 1 boinc boinc  274530052 Apr 22 11:29 HITS.49820244._015116.pool.root.1
[2026-04-22 11:31:41] -rw-r--r--. 1 boinc boinc        490 Apr 22 11:29 boinc_task_state.xml
[2026-04-22 11:31:41] -rw-------. 1 boinc boinc         95 Apr 22 11:30 pilot_heartbeat.json
[2026-04-22 11:31:41] -rw-------. 1 boinc boinc       1010 Apr 22 11:30 memory_monitor_summary.json
[2026-04-22 11:31:41] -rw-------. 1 boinc boinc    1509089 Apr 22 11:30 agis_ddmendpoints.agis.ALL.json
[2026-04-22 11:31:41] -rw-------. 1 boinc boinc     505400 Apr 22 11:30 log.49820244._015116.job.log.tgz.1
[2026-04-22 11:31:41] -rw-------. 1 boinc boinc       6332 Apr 22 11:30 heartbeat_new.json
[2026-04-22 11:31:41] -rw-------. 1 boinc boinc       6223 Apr 22 11:30 heartbeat.json
[2026-04-22 11:31:41] -rw-r--r--. 1 boinc boinc         28 Apr 22 11:31 wrapper_checkpoint.txt
[2026-04-22 11:31:41] -rw-------. 1 boinc boinc       5064 Apr 22 11:31 pilotlog.txt
[2026-04-22 11:31:41] -rw-r--r--. 1 boinc boinc       8192 Apr 22 11:31 boinc_mmap_file
[2026-04-22 11:31:41] -rw-------. 1 boinc boinc    1680200 Apr 22 11:31 log.49820244._015116.job.log.1
[2026-04-22 11:31:41] -rw-------. 1 boinc boinc        357 Apr 22 11:31 output.list
[2026-04-22 11:31:41] -rw-r--r--. 1 boinc boinc        410 Apr 22 11:31 runtime_log
[2026-04-22 11:31:41] -rw-------. 1 boinc boinc    2201600 Apr 22 11:31 result.tar.gz
[2026-04-22 11:31:41] -rw-r--r--. 1 boinc boinc       8438 Apr 22 11:31 runtime_log.err
[2026-04-22 11:31:41] -rw-------. 1 boinc boinc        655 Apr 22 11:31 5a9658797126.diag
[2026-04-22 11:31:41] -rw-r--r--. 1 boinc boinc      20633 Apr 22 11:31 stderr.txt
[2026-04-22 11:31:41] HITS file was successfully produced:
[2026-04-22 11:31:41] -rw-------. 1 boinc boinc 274530052 Apr 22 11:29 shared/HITS.pool.root.1
[2026-04-22 11:31:41]  *** Contents of shared directory: ***
[2026-04-22 11:31:41] total 2436916
[2026-04-22 11:31:41] -rw-r--r--. 2 boinc boinc 2217988995 Apr 22 06:20 ATLAS.root_0
[2026-04-22 11:31:41] -rw-r--r--. 2 boinc boinc      15665 Apr 22 06:20 start_atlas.sh
[2026-04-22 11:31:41] -rw-r--r--. 2 boinc boinc     656926 Apr 22 06:20 input.tar.gz
[2026-04-22 11:31:41] -rw-------. 1 boinc boinc  274530052 Apr 22 11:29 HITS.pool.root.1
[2026-04-22 11:31:41] -rw-------. 1 boinc boinc    2201600 Apr 22 11:31 result.tar.gz
11:31:42 (29427): run_atlas exited; CPU time 87521.599698
11:31:42 (29427): called boinc_finish(0)

</stderr_txt>
]]>

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