Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:26:21 (362868): wrapper (7.7.26015): starting
20:26:21 (362868): wrapper: running run_atlas (--nthreads 4)
[2026-04-21 20:26:21] Arguments: --nthreads 4
[2026-04-21 20:26:21] Threads: 4
[2026-04-21 20:26:21] Checking for CVMFS
[2026-04-21 20:26:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-21 20:26:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-21 20:26:23] Running cvmfs_config stat atlas.cern.ch
[2026-04-21 20:26:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-21 20:26:23] 2.9.2.0 363064 0 30032 158700 3 1 34679019 36864001 0 130560 0 0 0.000 1282 10508 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-21 20:26:23] CVMFS is ok
[2026-04-21 20:26:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-21 20:26:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-21 20:26:23] Further information can be found at the LHC@home message board.
[2026-04-21 20:26:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-21 20:26:23] Checking for apptainer binary...
[2026-04-21 20:26:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-21 20:26:23] Running /usr/bin/apptainer --version
[2026-04-21 20:26:23] apptainer version 1.4.1-1.1
[2026-04-21 20:26:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-21 20:26:23] thA309
[2026-04-21 20:26:23] apptainer works
[2026-04-21 20:26:23] Set ATHENA_PROC_NUMBER=4
[2026-04-21 20:26:23] Set ATHENA_CORE_NUMBER=4
[2026-04-21 20:26:23] Starting ATLAS job with PandaID=7105445856
[2026-04-21 20:26:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-21 22:32:54]  *** The last 200 lines of the pilot log: ***
[2026-04-21 22:32:54] 2026-04-21 20:32:00,687 | INFO     | process IDs to be killed: [371713] (in reverse order)
[2026-04-21 22:32:54] 2026-04-21 20:32:00,724 | WARNING  | found no corresponding commands to process id(s)
[2026-04-21 22:32:54] 2026-04-21 20:32:00,725 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-21 22:32:54] 2026-04-21 20:32:00,727 | INFO     | did not find any defunct processes belonging to 371713
[2026-04-21 22:32:54] 2026-04-21 20:32:00,728 | INFO     | did not find any defunct processes belonging to 371713
[2026-04-21 22:32:54] 2026-04-21 20:32:00,728 | INFO     | Ready for new job
[2026-04-21 22:32:54] 2026-04-21 20:32:00,729 | INFO     | **************************************
[2026-04-21 22:32:54] 2026-04-21 20:32:00,729 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-21 22:32:54] 2026-04-21 20:32:00,729 | INFO     | **************************************
[2026-04-21 22:32:54] 2026-04-21 20:32:00,729 | INFO     | 
[2026-04-21 22:32:54] 2026-04-21 20:32:00,730 | INFO     | architecture information:
[2026-04-21 22:32:54] 2026-04-21 20:32:00,730 | INFO     | executing command: cat /etc/os-release
[2026-04-21 22:32:54] 2026-04-21 20:32:00,745 | INFO     | cat /etc/os-release:
[2026-04-21 22:32:54] NAME="CentOS Linux"
[2026-04-21 22:32:54] VERSION="7 (Core)"
[2026-04-21 22:32:54] ID="centos"
[2026-04-21 22:32:54] ID_LIKE="rhel fedora"
[2026-04-21 22:32:54] VERSION_ID="7"
[2026-04-21 22:32:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-21 22:32:54] ANSI_COLOR="0;31"
[2026-04-21 22:32:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-21 22:32:54] HOME_URL="https://www.centos.org/"
[2026-04-21 22:32:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-21 22:32:54] 
[2026-04-21 22:32:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-21 22:32:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-21 22:32:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-21 22:32:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-21 22:32:54] 
[2026-04-21 22:32:54] 2026-04-21 20:32:00,745 | INFO     | **************************************
[2026-04-21 22:32:54] 2026-04-21 20:32:01,248 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-21 22:32:54] 2026-04-21 20:32:01,267 | INFO     | sufficient remaining disk space (220064645120 B)
[2026-04-21 22:32:54] 2026-04-21 20:32:01,267 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-21 22:32:54] 2026-04-21 20:32:01,267 | INFO     | current server update state: UPDATING_FINAL
[2026-04-21 22:32:54] 2026-04-21 20:32:01,267 | INFO     | update_server=False
[2026-04-21 22:32:54] 2026-04-21 20:32:01,267 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-21 22:32:54] 2026-04-21 20:32:01,267 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-21 22:32:54] 2026-04-21 20:32:01,268 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-04-21 22:32:54] 2026-04-21 20:32:01,268 | INFO     | found 0 job(s) in 20 queues
[2026-04-21 22:32:54] 2026-04-21 20:32:01,268 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-21 22:32:54] 2026-04-21 20:32:01,268 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-21 22:32:54] 2026-04-21 20:32:01,473 | INFO     | all job control threads have been joined
[2026-04-21 22:32:54] 2026-04-21 20:32:01,594 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-21 22:32:54] 2026-04-21 20:32:01,594 | INFO     | aborting loop
[2026-04-21 22:32:54] 2026-04-21 20:32:01,809 | INFO     | all data control threads have been joined
[2026-04-21 22:32:54] 2026-04-21 20:32:02,052 | INFO     | all payload control threads have been joined
[2026-04-21 22:32:54] 2026-04-21 20:32:02,086 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-21 22:32:54] 2026-04-21 20:32:02,273 | INFO     | [job] queue monitor thread has finished
[2026-04-21 22:32:54] 2026-04-21 20:32:02,273 | INFO     | [job] retrieve thread has finished
[2026-04-21 22:32:54] 2026-04-21 20:32:02,476 | INFO     | [job] control thread has finished
[2026-04-21 22:32:54] 2026-04-21 20:32:02,482 | INFO     | [payload] execute_payloads thread has finished
[2026-04-21 22:32:54] 2026-04-21 20:32:02,600 | INFO     | [job] job monitor thread has finished
[2026-04-21 22:32:54] 2026-04-21 20:32:02,772 | INFO     | [job] validate thread has finished
[2026-04-21 22:32:54] 2026-04-21 20:32:02,815 | INFO     | [data] control thread has finished
[2026-04-21 22:32:54] 2026-04-21 20:32:02,844 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-21 22:32:54] 2026-04-21 20:32:02,852 | INFO     | [job] create_data_payload thread has finished
[2026-04-21 22:32:54] 2026-04-21 20:32:02,924 | INFO     | [payload] validate_pre thread has finished
[2026-04-21 22:32:54] 2026-04-21 20:32:03,058 | INFO     | [payload] control thread has finished
[2026-04-21 22:32:54] 2026-04-21 20:32:03,116 | INFO     | [data] copytool_in thread has finished
[2026-04-21 22:32:54] 2026-04-21 20:32:03,130 | INFO     | [payload] validate_post thread has finished
[2026-04-21 22:32:54] 2026-04-21 20:32:03,683 | INFO     | [payload] failed_post thread has finished
[2026-04-21 22:32:54] 2026-04-21 20:32:04,092 | INFO     | [data] copytool_out thread has finished
[2026-04-21 22:32:54] 2026-04-21 20:32:06,851 | INFO     | [data] queue_monitor thread has finished
[2026-04-21 22:32:54] 2026-04-21 20:32:12,185 | INFO     | job.realtimelogging is not enabled
[2026-04-21 22:32:54] 2026-04-21 20:32:13,191 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-21 22:32:54] 2026-04-21 20:32:48,186 | INFO     | [monitor] cgroup control has ended
[2026-04-21 22:32:54] 2026-04-21 20:32:49,192 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139698876520256)>', '<ExcThread(monitor, started 139698005587712)>']
[2026-04-21 22:32:54] 2026-04-21 20:32:49,522 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-21 22:32:54] 2026-04-21 20:32:49,522 | INFO     | [monitor] control thread has ended
[2026-04-21 22:32:54] 2026-04-21 20:32:54,204 | INFO     | all workflow threads have been joined
[2026-04-21 22:32:54] 2026-04-21 20:32:54,204 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-21 22:32:54] 2026-04-21 20:32:54,205 | INFO     | traces error code: 0
[2026-04-21 22:32:54] 2026-04-21 20:32:54,205 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-21 22:32:54] 2026-04-21 20:32:54,286 [wrapper] ==== pilot stdout END ====
[2026-04-21 22:32:54] 2026-04-21 20:32:54,290 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-21 22:32:54] 2026-04-21 20:32:54,295 [wrapper] pilotpid: 367201
[2026-04-21 22:32:54] 2026-04-21 20:32:54,299 [wrapper] Pilot exit status: 0
[2026-04-21 22:32:54] 2026-04-21 20:32:54,311 [wrapper] pandaids: 7105445856
[2026-04-21 22:32:54] 2026-04-21 20:32:54,336 [wrapper] cleanup supervisor_pilot  378480 367202
[2026-04-21 22:32:54] 2026-04-21 20:32:54,340 [wrapper] Test setup, not cleaning
[2026-04-21 22:32:54] 2026-04-21 20:32:54,344 [wrapper] apfmon messages muted
[2026-04-21 22:32:54] 2026-04-21 20:32:54,348 [wrapper] ==== wrapper stdout END ====
[2026-04-21 22:32:54] 2026-04-21 20:32:54,352 [wrapper] ==== wrapper stderr END ====
[2026-04-21 22:32:54]  *** Error codes and diagnostics ***
[2026-04-21 22:32:54]     "exeErrorCode": 0,
[2026-04-21 22:32:54]     "pilotErrorCode": 0,
[2026-04-21 22:32:54]  *** Listing of results directory ***
[2026-04-21 22:32:54] total 2453300
[2026-04-21 22:32:54] -rwx------ 1 boinc boinc      36322 Apr 21 13:23 runpilot2-wrapper.sh
[2026-04-21 22:32:54] -rw-r--r-- 1 boinc boinc     644190 Apr 21 19:04 pilot3.tar.gz
[2026-04-21 22:32:54] -rw-r--r-- 1 boinc boinc       5094 Apr 21 19:14 queuedata.json
[2026-04-21 22:32:54] -rw-r--r-- 1 boinc boinc        100 Apr 21 20:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-21 22:32:54] -rwxr-xr-x 1 boinc boinc       7986 Apr 21 20:26 run_atlas
[2026-04-21 22:32:54] -rw-r--r-- 1 boinc boinc        105 Apr 21 20:26 job.xml
[2026-04-21 22:32:54] -rw-r--r-- 2 boinc boinc 2235427021 Apr 21 20:26 EVNT.49820373._000042.pool.root.1
[2026-04-21 22:32:54] -rw-r--r-- 2 boinc boinc     656938 Apr 21 20:26 input.tar.gz
[2026-04-21 22:32:54] -rw-r--r-- 2 boinc boinc      15665 Apr 21 20:26 start_atlas.sh
[2026-04-21 22:32:54] drwxrwx--x 2 boinc boinc       4096 Apr 21 20:26 shared
[2026-04-21 22:32:54] -rw-r--r-- 1 boinc boinc          0 Apr 21 20:26 boinc_setup_complete
[2026-04-21 22:32:54] -rw-r--r-- 1 boinc boinc       6292 Apr 21 20:26 init_data.xml
[2026-04-21 22:32:54] -rw-r--r-- 1 boinc boinc          0 Apr 21 20:26 boinc_lockfile
[2026-04-21 22:32:54] -rw-r--r-- 1 boinc boinc       2586 Apr 21 20:26 pandaJob.out
[2026-04-21 22:32:54] -rw------- 1 boinc boinc     995017 Apr 21 20:26 agis_schedconf.cvmfs.json
[2026-04-21 22:32:54] -rw------- 1 boinc boinc    1509089 Apr 21 20:26 agis_ddmendpoints.agis.ALL.json
[2026-04-21 22:32:54] -rw------- 1 boinc boinc        421 Apr 21 20:26 workernode_map.json
[2026-04-21 22:32:54] drwx------ 5 boinc boinc       4096 Apr 21 20:26 pilot3
[2026-04-21 22:32:54] -rw------- 1 boinc boinc         95 Apr 21 22:31 pilot_heartbeat.json
[2026-04-21 22:32:54] -rw------- 1 boinc boinc  270389226 Apr 21 22:31 HITS.49820375._011480.pool.root.1
[2026-04-21 22:32:54] -rw-r--r-- 1 boinc boinc        488 Apr 21 22:31 boinc_task_state.xml
[2026-04-21 22:32:54] -rw------- 1 boinc boinc       1019 Apr 21 22:31 memory_monitor_summary.json
[2026-04-21 22:32:54] -rw------- 1 boinc boinc     448172 Apr 21 22:31 log.49820375._011480.job.log.tgz.1
[2026-04-21 22:32:54] -rw------- 1 boinc boinc       6322 Apr 21 22:31 heartbeat_new.json
[2026-04-21 22:32:54] -rw------- 1 boinc boinc       6213 Apr 21 22:31 heartbeat.json
[2026-04-21 22:32:54] -rw-r--r-- 1 boinc boinc         27 Apr 21 22:32 wrapper_checkpoint.txt
[2026-04-21 22:32:54] -rw-r--r-- 1 boinc boinc       8192 Apr 21 22:32 boinc_mmap_file
[2026-04-21 22:32:54] -rw------- 1 boinc boinc       4623 Apr 21 22:32 pilotlog.txt
[2026-04-21 22:32:54] -rw------- 1 boinc boinc     713052 Apr 21 22:32 log.49820375._011480.job.log.1
[2026-04-21 22:32:54] -rw------- 1 boinc boinc        357 Apr 21 22:32 output.list
[2026-04-21 22:32:54] -rw-r--r-- 1 boinc boinc        410 Apr 21 22:32 runtime_log
[2026-04-21 22:32:54] -rw------- 1 boinc boinc    1177600 Apr 21 22:32 result.tar.gz
[2026-04-21 22:32:54] -rw-r--r-- 1 boinc boinc       8518 Apr 21 22:32 runtime_log.err
[2026-04-21 22:32:54] -rw------- 1 boinc boinc        658 Apr 21 22:32 5e11f548804b.diag
[2026-04-21 22:32:54] -rw-r--r-- 1 boinc boinc       9859 Apr 21 22:32 stderr.txt
[2026-04-21 22:32:54] HITS file was successfully produced:
[2026-04-21 22:32:54] -rw------- 1 boinc boinc 270389226 Apr 21 22:31 shared/HITS.pool.root.1
[2026-04-21 22:32:54]  *** Contents of shared directory: ***
[2026-04-21 22:32:54] total 2448908
[2026-04-21 22:32:54] -rw-r--r-- 2 boinc boinc 2235427021 Apr 21 20:26 ATLAS.root_0
[2026-04-21 22:32:54] -rw-r--r-- 2 boinc boinc     656938 Apr 21 20:26 input.tar.gz
[2026-04-21 22:32:54] -rw-r--r-- 2 boinc boinc      15665 Apr 21 20:26 start_atlas.sh
[2026-04-21 22:32:54] -rw------- 1 boinc boinc  270389226 Apr 21 22:31 HITS.pool.root.1
[2026-04-21 22:32:54] -rw------- 1 boinc boinc    1177600 Apr 21 22:32 result.tar.gz
22:32:55 (362868): run_atlas exited; CPU time 28199.937056
22:32:55 (362868): called boinc_finish(0)

</stderr_txt>
]]>

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