Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:25:18 (3684946): wrapper (7.7.26015): starting
20:25:18 (3684946): wrapper: running run_atlas (--nthreads 3)
[2026-04-21 20:25:18] Arguments: --nthreads 3
[2026-04-21 20:25:18] Threads: 3
[2026-04-21 20:25:18] Checking for CVMFS
[2026-04-21 20:25:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-21 20:25:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-21 20:25:21] Running cvmfs_config stat atlas.cern.ch
[2026-04-21 20:25:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-21 20:25:21] 2.9.2.0 3685150 0 29696 158700 3 1 19622950 36864000 0 130560 0 0 0.000 1282 9496 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-21 20:25:21] CVMFS is ok
[2026-04-21 20:25:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-21 20:25:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-21 20:25:21] Further information can be found at the LHC@home message board.
[2026-04-21 20:25:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-21 20:25:21] Checking for apptainer binary...
[2026-04-21 20:25:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-21 20:25:21] Running /usr/bin/apptainer --version
[2026-04-21 20:25:21] apptainer version 1.4.1-1.1
[2026-04-21 20:25:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-21 20:25:21] atlasA303
[2026-04-21 20:25:21] apptainer works
[2026-04-21 20:25:21] Set ATHENA_PROC_NUMBER=3
[2026-04-21 20:25:21] Set ATHENA_CORE_NUMBER=3
[2026-04-21 20:25:21] Starting ATLAS job with PandaID=7087256777
[2026-04-21 20:25:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-21 20:28:36]  *** The last 200 lines of the pilot log: ***
[2026-04-21 20:28:36] 2026-04-21 18:27:57,379 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-21 20:28:36] 2026-04-21 18:27:57,379 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-21 20:28:36] 2026-04-21 18:27:57,379 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-21 20:28:36] 2026-04-21 18:27:57,379 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-21 20:28:36] 2026-04-21 18:27:57,379 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-21 20:28:36] 2026-04-21 18:27:57,379 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-21 20:28:36] 2026-04-21 18:27:57,379 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-21 20:28:36] 2026-04-21 18:27:57,379 | INFO     | job 7087256777 has completed (purged errors)
[2026-04-21 20:28:36] 2026-04-21 18:27:57,379 | INFO     | overall cleanup function is called
[2026-04-21 20:28:36] 2026-04-21 18:27:58,385 | INFO     | --- collectZombieJob: --- 10, [3693754]
[2026-04-21 20:28:36] 2026-04-21 18:27:58,386 | INFO     | zombie collector waiting for pid 3693754
[2026-04-21 20:28:36] 2026-04-21 18:27:58,386 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-21 20:28:36] 2026-04-21 18:27:58,386 | INFO     | collected zombie processes
[2026-04-21 20:28:36] 2026-04-21 18:27:58,386 | INFO     | will attempt to kill all subprocesses of pid=3693754
[2026-04-21 20:28:36] 2026-04-21 18:27:58,432 | INFO     | process IDs to be killed: [3693754] (in reverse order)
[2026-04-21 20:28:36] 2026-04-21 18:27:58,458 | WARNING  | found no corresponding commands to process id(s)
[2026-04-21 20:28:36] 2026-04-21 18:27:58,458 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-21 20:28:36] 2026-04-21 18:27:58,459 | INFO     | did not find any defunct processes belonging to 3693754
[2026-04-21 20:28:36] 2026-04-21 18:27:58,460 | INFO     | did not find any defunct processes belonging to 3693754
[2026-04-21 20:28:36] 2026-04-21 18:27:58,460 | INFO     | Ready for new job
[2026-04-21 20:28:36] 2026-04-21 18:27:58,461 | INFO     | **************************************
[2026-04-21 20:28:36] 2026-04-21 18:27:58,461 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-21 20:28:36] 2026-04-21 18:27:58,461 | INFO     | **************************************
[2026-04-21 20:28:36] 2026-04-21 18:27:58,461 | INFO     | 
[2026-04-21 20:28:36] 2026-04-21 18:27:58,461 | INFO     | architecture information:
[2026-04-21 20:28:36] 2026-04-21 18:27:58,461 | INFO     | executing command: cat /etc/os-release
[2026-04-21 20:28:36] 2026-04-21 18:27:58,470 | INFO     | cat /etc/os-release:
[2026-04-21 20:28:36] NAME="CentOS Linux"
[2026-04-21 20:28:36] VERSION="7 (Core)"
[2026-04-21 20:28:36] ID="centos"
[2026-04-21 20:28:36] ID_LIKE="rhel fedora"
[2026-04-21 20:28:36] VERSION_ID="7"
[2026-04-21 20:28:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-21 20:28:36] ANSI_COLOR="0;31"
[2026-04-21 20:28:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-21 20:28:36] HOME_URL="https://www.centos.org/"
[2026-04-21 20:28:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-21 20:28:36] 
[2026-04-21 20:28:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-21 20:28:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-21 20:28:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-21 20:28:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-21 20:28:36] 
[2026-04-21 20:28:36] 2026-04-21 18:27:58,470 | INFO     | **************************************
[2026-04-21 20:28:36] 2026-04-21 18:27:58,973 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-21 20:28:36] 2026-04-21 18:27:58,987 | INFO     | sufficient remaining disk space (384996212736 B)
[2026-04-21 20:28:36] 2026-04-21 18:27:58,987 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-21 20:28:36] 2026-04-21 18:27:58,987 | INFO     | current server update state: UPDATING_FINAL
[2026-04-21 20:28:36] 2026-04-21 18:27:58,987 | INFO     | update_server=False
[2026-04-21 20:28:36] 2026-04-21 18:27:58,987 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-21 20:28:36] 2026-04-21 18:27:58,987 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-21 20:28:36] 2026-04-21 18:27:58,987 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-21 20:28:36] 2026-04-21 18:27:58,987 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-21 20:28:36] 2026-04-21 18:27:58,987 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-21 20:28:36] 2026-04-21 18:27:58,988 | INFO     | aborting loop
[2026-04-21 20:28:36] 2026-04-21 18:27:59,350 | INFO     | all job control threads have been joined
[2026-04-21 20:28:36] 2026-04-21 18:27:59,877 | INFO     | all data control threads have been joined
[2026-04-21 20:28:36] 2026-04-21 18:27:59,900 | INFO     | all payload control threads have been joined
[2026-04-21 20:28:36] 2026-04-21 18:27:59,993 | INFO     | [job] retrieve thread has finished
[2026-04-21 20:28:36] 2026-04-21 18:27:59,993 | INFO     | [job] queue monitor thread has finished
[2026-04-21 20:28:36] 2026-04-21 18:27:59,993 | INFO     | [job] job monitor thread has finished
[2026-04-21 20:28:36] 2026-04-21 18:28:00,212 | INFO     | [payload] execute_payloads thread has finished
[2026-04-21 20:28:36] 2026-04-21 18:28:00,355 | INFO     | [job] control thread has finished
[2026-04-21 20:28:36] 2026-04-21 18:28:00,381 | INFO     | [payload] failed_post thread has finished
[2026-04-21 20:28:36] 2026-04-21 18:28:00,628 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-21 20:28:36] 2026-04-21 18:28:00,704 | INFO     | [payload] validate_post thread has finished
[2026-04-21 20:28:36] 2026-04-21 18:28:00,882 | INFO     | [data] control thread has finished
[2026-04-21 20:28:36] 2026-04-21 18:28:00,906 | INFO     | [payload] control thread has finished
[2026-04-21 20:28:36] 2026-04-21 18:28:00,959 | INFO     | [job] validate thread has finished
[2026-04-21 20:28:36] 2026-04-21 18:28:00,993 | INFO     | [data] copytool_out thread has finished
[2026-04-21 20:28:36] 2026-04-21 18:28:01,032 | INFO     | [job] create_data_payload thread has finished
[2026-04-21 20:28:36] 2026-04-21 18:28:01,083 | INFO     | [payload] validate_pre thread has finished
[2026-04-21 20:28:36] 2026-04-21 18:28:01,169 | INFO     | [data] copytool_in thread has finished
[2026-04-21 20:28:36] 2026-04-21 18:28:02,994 | INFO     | [data] queue_monitor thread has finished
[2026-04-21 20:28:36] 2026-04-21 18:28:29,400 | INFO     | PID=3689246 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-21 20:28:36] 2026-04-21 18:28:29,400 | INFO     | found 0 job(s) in 20 queues
[2026-04-21 20:28:36] 2026-04-21 18:28:29,400 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-21 20:28:36] 2026-04-21 18:28:29,400 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-21 20:28:36] 2026-04-21 18:28:30,710 | INFO     | [monitor] cgroup control has ended
[2026-04-21 20:28:36] 2026-04-21 18:28:31,228 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140610688735040)>', '<ExcThread(monitor, started 140610333808384)>']
[2026-04-21 20:28:36] 2026-04-21 18:28:31,411 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-21 20:28:36] 2026-04-21 18:28:31,411 | INFO     | [monitor] control thread has ended
[2026-04-21 20:28:36] 2026-04-21 18:28:36,238 | INFO     | all workflow threads have been joined
[2026-04-21 20:28:36] 2026-04-21 18:28:36,239 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-21 20:28:36] 2026-04-21 18:28:36,239 | INFO     | traces error code: 0
[2026-04-21 20:28:36] 2026-04-21 18:28:36,239 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-21 20:28:36] 2026-04-21 18:28:36,288 [wrapper] ==== pilot stdout END ====
[2026-04-21 20:28:36] 2026-04-21 18:28:36,290 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-21 20:28:36] 2026-04-21 18:28:36,293 [wrapper] pilotpid: 3689246
[2026-04-21 20:28:36] 2026-04-21 18:28:36,295 [wrapper] Pilot exit status: 0
[2026-04-21 20:28:36] 2026-04-21 18:28:36,302 [wrapper] pandaids: 7087256777
[2026-04-21 20:28:36] 2026-04-21 18:28:36,319 [wrapper] cleanup supervisor_pilot 3689252 3689247
[2026-04-21 20:28:36] 2026-04-21 18:28:36,321 [wrapper] Test setup, not cleaning
[2026-04-21 20:28:36] 2026-04-21 18:28:36,323 [wrapper] apfmon messages muted
[2026-04-21 20:28:36] 2026-04-21 18:28:36,326 [wrapper] ==== wrapper stdout END ====
[2026-04-21 20:28:36] 2026-04-21 18:28:36,328 [wrapper] ==== wrapper stderr END ====
[2026-04-21 20:28:36]  *** Error codes and diagnostics ***
[2026-04-21 20:28:36]     "exeErrorCode": 66,
[2026-04-21 20:28:36]     "exeErrorDiag": "File EVNT.49263189._001270.pool.root.1 did not pass corruption test",
[2026-04-21 20:28:36]     "pilotErrorCode": 1305,
[2026-04-21 20:28:36]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: File EVNT.49263189._001270.pool.root.1 did not pass corruption test",
[2026-04-21 20:28:36]  *** Listing of results directory ***
[2026-04-21 20:28:36] total 224188
[2026-04-21 20:28:36] -rw-r--r-- 1 boinc boinc      5094 Apr 19 11:42 queuedata.json
[2026-04-21 20:28:36] -rwx------ 1 boinc boinc     36322 Apr 19 11:43 runpilot2-wrapper.sh
[2026-04-21 20:28:36] -rw-r--r-- 1 boinc boinc    644190 Apr 19 11:43 pilot3.tar.gz
[2026-04-21 20:28:36] -rw-r--r-- 1 boinc boinc       100 Apr 21 20:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-21 20:28:36] -rwxr-xr-x 1 boinc boinc      7986 Apr 21 20:25 run_atlas
[2026-04-21 20:28:36] -rw-r--r-- 1 boinc boinc       105 Apr 21 20:25 job.xml
[2026-04-21 20:28:36] -rw-r--r-- 2 boinc boinc 225358505 Apr 21 20:25 ATLAS.root_0
[2026-04-21 20:28:36] -rw-r--r-- 2 boinc boinc    656926 Apr 21 20:25 input.tar.gz
[2026-04-21 20:28:36] -rw-r--r-- 2 boinc boinc     15615 Apr 21 20:25 start_atlas.sh
[2026-04-21 20:28:36] drwxrwx--x 2 boinc boinc      4096 Apr 21 20:25 shared
[2026-04-21 20:28:36] -rw-r--r-- 1 boinc boinc         0 Apr 21 20:25 boinc_setup_complete
[2026-04-21 20:28:36] -rw-r--r-- 1 boinc boinc      6363 Apr 21 20:25 init_data.xml
[2026-04-21 20:28:36] -rw-r--r-- 1 boinc boinc         0 Apr 21 20:25 boinc_lockfile
[2026-04-21 20:28:36] -rw-r--r-- 1 boinc boinc      2578 Apr 21 20:25 pandaJob.out
[2026-04-21 20:28:36] -rw------- 1 boinc boinc    995017 Apr 21 20:25 agis_schedconf.cvmfs.json
[2026-04-21 20:28:36] -rw------- 1 boinc boinc   1509089 Apr 21 20:25 agis_ddmendpoints.agis.ALL.json
[2026-04-21 20:28:36] -rw------- 1 boinc boinc       426 Apr 21 20:25 workernode_map.json
[2026-04-21 20:28:36] drwx------ 5 boinc boinc      4096 Apr 21 20:25 pilot3
[2026-04-21 20:28:36] -rw------- 1 boinc boinc       984 Apr 21 20:25 memory_monitor_summary.json
[2026-04-21 20:28:36] -rw------- 1 boinc boinc     16425 Apr 21 20:25 log.49263191._052352.job.log.tgz.1
[2026-04-21 20:28:36] -rw------- 1 boinc boinc      5774 Apr 21 20:27 heartbeat_new.json
[2026-04-21 20:28:36] -rw------- 1 boinc boinc      5736 Apr 21 20:27 heartbeat.json
[2026-04-21 20:28:36] -rw-r--r-- 1 boinc boinc        22 Apr 21 20:28 wrapper_checkpoint.txt
[2026-04-21 20:28:36] -rw-r--r-- 1 boinc boinc      8192 Apr 21 20:28 boinc_mmap_file
[2026-04-21 20:28:36] -rw-r--r-- 1 boinc boinc       480 Apr 21 20:28 boinc_task_state.xml
[2026-04-21 20:28:36] -rw------- 1 boinc boinc        95 Apr 21 20:28 pilot_heartbeat.json
[2026-04-21 20:28:36] -rw------- 1 boinc boinc      4747 Apr 21 20:28 pilotlog.txt
[2026-04-21 20:28:36] -rw------- 1 boinc boinc     73135 Apr 21 20:28 log.49263191._052352.job.log.1
[2026-04-21 20:28:36] -rw------- 1 boinc boinc       188 Apr 21 20:28 output.list
[2026-04-21 20:28:36] -rw-r--r-- 1 boinc boinc       410 Apr 21 20:28 runtime_log
[2026-04-21 20:28:36] -rw------- 1 boinc boinc    102400 Apr 21 20:28 result.tar.gz
[2026-04-21 20:28:36] -rw-r--r-- 1 boinc boinc      8328 Apr 21 20:28 runtime_log.err
[2026-04-21 20:28:36] -rw------- 1 boinc boinc       648 Apr 21 20:28 a3afc1b27ff8.diag
[2026-04-21 20:28:36] -rw-r--r-- 1 boinc boinc     11648 Apr 21 20:28 stderr.txt
[2026-04-21 20:28:36] No HITS result produced
[2026-04-21 20:28:36]  *** Contents of shared directory: ***
[2026-04-21 20:28:36] total 220844
[2026-04-21 20:28:36] -rw-r--r-- 2 boinc boinc 225358505 Apr 21 20:25 ATLAS.root_0
[2026-04-21 20:28:36] -rw-r--r-- 2 boinc boinc    656926 Apr 21 20:25 input.tar.gz
[2026-04-21 20:28:36] -rw-r--r-- 2 boinc boinc     15615 Apr 21 20:25 start_atlas.sh
[2026-04-21 20:28:36] -rw------- 1 boinc boinc    102400 Apr 21 20:28 result.tar.gz
20:28:38 (3684946): run_atlas exited; CPU time 6.973484
20:28:38 (3684946): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN