Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:21:30 (26354): wrapper (7.7.26015): starting
04:21:30 (26354): wrapper: running run_atlas (--nthreads 8)
[2026-04-22 04:21:30] Arguments: --nthreads 8
[2026-04-22 04:21:30] Threads: 8
[2026-04-22 04:21:30] Checking for CVMFS
[2026-04-22 04:21:30] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-22 04:21:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-22 04:21:31] Running cvmfs_config stat atlas.cern.ch
[2026-04-22 04:21:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-22 04:21:31] 2.11.2.0 24173 9231 98032 158712 1 104 19706891 25165825 515 130560 0 2168345 99.723 4628405 19695 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-22 04:21:31] CVMFS is ok
[2026-04-22 04:21:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-22 04:21:31] Checking for apptainer binary...
[2026-04-22 04:21:31] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-22 04:21:31] Running /usr/bin/apptainer --version
[2026-04-22 04:21:31] apptainer version 1.3.2-1.el7
[2026-04-22 04:21:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-22 04:21:32] cg-vwn464.simple-grid.lan
[2026-04-22 04:21:32] apptainer works
[2026-04-22 04:21:32] Set ATHENA_PROC_NUMBER=8
[2026-04-22 04:21:32] Set ATHENA_CORE_NUMBER=8
[2026-04-22 04:21:32] Starting ATLAS job with PandaID=7105352496
[2026-04-22 04:21:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-22 09:00:37]  *** The last 200 lines of the pilot log: ***
[2026-04-22 09:00:37] 2026-04-22 06:59:25,488 | INFO     | this job has now completed (state=finished)
[2026-04-22 09:00:37] 2026-04-22 06:59:25,488 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-22 09:00:37] 2026-04-22 06:59:25,488 | INFO     | log transfer has been attempted: DONE
[2026-04-22 09:00:37] 2026-04-22 06:59:25,488 | INFO     | job 7105352496 has finished - writing final server update
[2026-04-22 09:00:37] 2026-04-22 06:59:25,488 | INFO     | total number of processed events: 400 (read)
[2026-04-22 09:00:37] 2026-04-22 06:59:25,490 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-7105352496/memory_monitor_summary.json (trf name=prmon)
[2026-04-22 09:00:37] 2026-04-22 06:59:25,491 | INFO     | extracted standard info from prmon json
[2026-04-22 09:00:37] 2026-04-22 06:59:25,491 | INFO     | extracted standard memory fields from prmon json
[2026-04-22 09:00:37] 2026-04-22 06:59:25,491 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-22 09:00:37] 2026-04-22 06:59:25,491 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-22 09:00:37] 2026-04-22 06:59:25,496 | INFO     | fitting pss+swap vs Time
[2026-04-22 09:00:37] 2026-04-22 06:59:25,496 | INFO     | sum of square deviations: 6309000152.0
[2026-04-22 09:00:37] 2026-04-22 06:59:25,499 | INFO     | sum of deviations: -43581386377.00001
[2026-04-22 09:00:37] 2026-04-22 06:59:25,499 | INFO     | mean x (centered): 0.0
[2026-04-22 09:00:37] 2026-04-22 06:59:25,499 | INFO     | mean y: 2582895.7252747254
[2026-04-22 09:00:37] 2026-04-22 06:59:25,499 | INFO     | intersect: 2582895.7252747254
[2026-04-22 09:00:37] 2026-04-22 06:59:25,500 | INFO     | chi2: 2.525157173627063
[2026-04-22 09:00:37] 2026-04-22 06:59:25,500 | INFO     | sum of square deviations: 5968658887.0
[2026-04-22 09:00:37] 2026-04-22 06:59:25,503 | INFO     | sum of deviations: -24129938238.0
[2026-04-22 09:00:37] 2026-04-22 06:59:25,503 | INFO     | mean x (centered): 0.0
[2026-04-22 09:00:37] 2026-04-22 06:59:25,503 | INFO     | mean y: 2591489.2014925373
[2026-04-22 09:00:37] 2026-04-22 06:59:25,503 | INFO     | intersect: 2591489.2014925373
[2026-04-22 09:00:37] 2026-04-22 06:59:25,504 | INFO     | chi2: 1.7635583961179389
[2026-04-22 09:00:37] 2026-04-22 06:59:25,504 | INFO     | current chi2=1.7635583961179389 (change=30.160450425158515 %)
[2026-04-22 09:00:37] 2026-04-22 06:59:25,504 | INFO     | sum of square deviations: 5640782972.0
[2026-04-22 09:00:37] 2026-04-22 06:59:25,506 | INFO     | sum of deviations: -23312575387.0
[2026-04-22 09:00:37] 2026-04-22 06:59:25,507 | INFO     | mean x (centered): 0.0
[2026-04-22 09:00:37] 2026-04-22 06:59:25,507 | INFO     | mean y: 2591869.425855513
[2026-04-22 09:00:37] 2026-04-22 06:59:25,507 | INFO     | intersect: 2591869.425855513
[2026-04-22 09:00:37] 2026-04-22 06:59:25,507 | INFO     | chi2: 1.7628316468303662
[2026-04-22 09:00:37] 2026-04-22 06:59:25,507 | INFO     | current chi2=1.7628316468303662 (change=0.04120925562614924 %)
[2026-04-22 09:00:37] 2026-04-22 06:59:25,508 | INFO     | right removable region: 262
[2026-04-22 09:00:37] 2026-04-22 06:59:25,508 | INFO     | sum of square deviations: 5968658887.0
[2026-04-22 09:00:37] 2026-04-22 06:59:25,510 | INFO     | sum of deviations: -87151867723.0
[2026-04-22 09:00:37] 2026-04-22 06:59:25,510 | INFO     | mean x (centered): 0.0
[2026-04-22 09:00:37] 2026-04-22 06:59:25,511 | INFO     | mean y: 2602257.7164179105
[2026-04-22 09:00:37] 2026-04-22 06:59:25,511 | INFO     | intersect: 2602257.7164179105
[2026-04-22 09:00:37] 2026-04-22 06:59:25,511 | INFO     | chi2: 1.0402340802301464
[2026-04-22 09:00:37] 2026-04-22 06:59:25,511 | INFO     | current chi2=1.0402340802301464 (change=58.80517493744819 %)
[2026-04-22 09:00:37] 2026-04-22 06:59:25,512 | INFO     | sum of square deviations: 5640782972.0
[2026-04-22 09:00:37] 2026-04-22 06:59:25,514 | INFO     | sum of deviations: -91569800775.0
[2026-04-22 09:00:37] 2026-04-22 06:59:25,514 | INFO     | mean x (centered): 0.0
[2026-04-22 09:00:37] 2026-04-22 06:59:25,514 | INFO     | mean y: 2604296.2927756654
[2026-04-22 09:00:37] 2026-04-22 06:59:25,515 | INFO     | intersect: 2604296.2927756654
[2026-04-22 09:00:37] 2026-04-22 06:59:25,515 | INFO     | chi2: 0.9993046092872505
[2026-04-22 09:00:37] 2026-04-22 06:59:25,515 | INFO     | current chi2=0.9993046092872505 (change=3.934640454563886 %)
[2026-04-22 09:00:37] 2026-04-22 06:59:25,515 | INFO     | left removable region: 10
[2026-04-22 09:00:37] 2026-04-22 06:59:25,515 | INFO     | sum of square deviations: 4962187923.0
[2026-04-22 09:00:37] 2026-04-22 06:59:25,517 | INFO     | sum of deviations: -69971127931.0
[2026-04-22 09:00:37] 2026-04-22 06:59:25,518 | INFO     | mean x (centered): 0.0
[2026-04-22 09:00:37] 2026-04-22 06:59:25,518 | INFO     | mean y: 2614641.8253968256
[2026-04-22 09:00:37] 2026-04-22 06:59:25,518 | INFO     | intersect: 2614641.8253968256
[2026-04-22 09:00:37] 2026-04-22 06:59:25,518 | INFO     | chi2: 0.21403187957952258
[2026-04-22 09:00:37] 2026-04-22 06:59:25,518 | INFO     | current memory leak: -14.10 B/s (using 252 data points, chi2=0.21)
[2026-04-22 09:00:37] 2026-04-22 06:59:25,519 | INFO     | could have reported an average CPU frequency of 2250 MHz (13 samples)
[2026-04-22 09:00:37] 2026-04-22 06:59:25,519 | INFO     | ..............................
[2026-04-22 09:00:37] 2026-04-22 06:59:25,519 | INFO     | . Timing measurements:
[2026-04-22 09:00:37] 2026-04-22 06:59:25,520 | INFO     | . get job = 0 s
[2026-04-22 09:00:37] 2026-04-22 06:59:25,520 | INFO     | . initial setup = 8 s
[2026-04-22 09:00:37] 2026-04-22 06:59:25,520 | INFO     | . payload setup = 12 s
[2026-04-22 09:00:37] 2026-04-22 06:59:25,520 | INFO     | . stage-in = 0 s
[2026-04-22 09:00:37] 2026-04-22 06:59:25,520 | INFO     | . payload execution = 16618 s
[2026-04-22 09:00:37] 2026-04-22 06:59:25,520 | INFO     | . stage-out = 4 s
[2026-04-22 09:00:37] 2026-04-22 06:59:25,520 | INFO     | . log creation = 1 s
[2026-04-22 09:00:37] 2026-04-22 06:59:25,520 | INFO     | ..............................
[2026-04-22 09:00:37] 2026-04-22 06:59:25,627 | INFO     | 
[2026-04-22 09:00:37] 2026-04-22 06:59:25,627 | INFO     | job summary report
[2026-04-22 09:00:37] 2026-04-22 06:59:25,628 | INFO     | --------------------------------------------------
[2026-04-22 09:00:37] 2026-04-22 06:59:25,628 | INFO     | PanDA job id: 7105352496
[2026-04-22 09:00:37] 2026-04-22 06:59:25,628 | INFO     | task id: 49820244
[2026-04-22 09:00:37] 2026-04-22 06:59:25,628 | INFO     | errors: (none)
[2026-04-22 09:00:37] 2026-04-22 06:59:25,628 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-22 09:00:37] 2026-04-22 06:59:25,628 | INFO     | pilot state: finished 
[2026-04-22 09:00:37] 2026-04-22 06:59:25,628 | INFO     | transexitcode: 0
[2026-04-22 09:00:37] 2026-04-22 06:59:25,628 | INFO     | exeerrorcode: 0
[2026-04-22 09:00:37] 2026-04-22 06:59:25,628 | INFO     | exeerrordiag: 
[2026-04-22 09:00:37] 2026-04-22 06:59:25,628 | INFO     | exitcode: 0
[2026-04-22 09:00:37] 2026-04-22 06:59:25,628 | INFO     | exitmsg: OK
[2026-04-22 09:00:37] 2026-04-22 06:59:25,628 | INFO     | cpuconsumptiontime: 86195 s
[2026-04-22 09:00:37] 2026-04-22 06:59:25,628 | INFO     | nevents: 400
[2026-04-22 09:00:37] 2026-04-22 06:59:25,629 | INFO     | neventsw: 0
[2026-04-22 09:00:37] 2026-04-22 06:59:25,629 | INFO     | pid: 2431
[2026-04-22 09:00:37] 2026-04-22 06:59:25,629 | INFO     | pgrp: 2431
[2026-04-22 09:00:37] 2026-04-22 06:59:25,629 | INFO     | corecount: 8
[2026-04-22 09:00:37] 2026-04-22 06:59:25,629 | INFO     | event service: False
[2026-04-22 09:00:37] 2026-04-22 06:59:25,629 | INFO     | sizes: {0: 2273921, 1: 2276408, 2: 2276408, 16635: 2308386, 16640: 2317386, 16643: 2317442, 16645: 2317764}
[2026-04-22 09:00:37] 2026-04-22 06:59:25,629 | INFO     | --------------------------------------------------
[2026-04-22 09:00:37] 2026-04-22 06:59:25,629 | INFO     | 
[2026-04-22 09:00:37] 2026-04-22 06:59:25,629 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2026-04-22 09:00:37] 2026-04-22 06:59:26,108 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-22 09:00:37] 2026-04-22 06:59:26,109 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-22 09:00:37] 2026-04-22 06:59:26,109 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-22 09:00:37] 2026-04-22 06:59:26,109 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-22 09:00:37] 2026-04-22 06:59:26,109 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-22 09:00:37] 2026-04-22 06:59:26,109 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-22 09:00:37] 2026-04-22 06:59:26,109 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-22 09:00:37] 2026-04-22 06:59:26,109 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-22 09:00:37] 2026-04-22 06:59:26,109 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-22 09:00:37] 2026-04-22 06:59:26,109 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-22 09:00:37] 2026-04-22 06:59:26,109 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-22 09:00:37] 2026-04-22 06:59:26,109 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-22 09:00:37] 2026-04-22 06:59:26,110 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-22 09:00:37] 2026-04-22 06:59:26,110 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-22 09:00:37] 2026-04-22 06:59:26,110 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-22 09:00:37] 2026-04-22 06:59:26,110 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-22 09:00:37] 2026-04-22 06:59:26,110 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-22 09:00:37] 2026-04-22 06:59:26,110 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-22 09:00:37] 2026-04-22 06:59:26,110 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-22 09:00:37] 2026-04-22 06:59:26,110 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-22 09:00:37] 2026-04-22 06:59:26,110 | INFO     | job 7105352496 has completed (purged errors)
[2026-04-22 09:00:37] 2026-04-22 06:59:26,111 | INFO     | overall cleanup function is called
[2026-04-22 09:00:37] 2026-04-22 06:59:27,119 | INFO     | --- collectZombieJob: --- 10, [2431]
[2026-04-22 09:00:37] 2026-04-22 06:59:27,120 | INFO     | zombie collector waiting for pid 2431
[2026-04-22 09:00:37] 2026-04-22 06:59:27,120 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-22 09:00:37] 2026-04-22 06:59:27,120 | INFO     | collected zombie processes
[2026-04-22 09:00:37] 2026-04-22 06:59:27,120 | INFO     | will attempt to kill all subprocesses of pid=2431
[2026-04-22 09:00:37] 2026-04-22 06:59:27,202 | INFO     | process IDs to be killed: [2431] (in reverse order)
[2026-04-22 09:00:37] 2026-04-22 06:59:28,287 | WARNING  | found no corresponding commands to process id(s)
[2026-04-22 09:00:37] 2026-04-22 06:59:28,287 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-22 09:00:37] 2026-04-22 06:59:28,289 | INFO     | did not find any defunct processes belonging to 2431
[2026-04-22 09:00:37] 2026-04-22 06:59:28,291 | INFO     | did not find any defunct processes belonging to 2431
[2026-04-22 09:00:37] 2026-04-22 06:59:28,291 | INFO     | Ready for new job
[2026-04-22 09:00:37] 2026-04-22 06:59:28,293 | INFO     | **************************************
[2026-04-22 09:00:37] 2026-04-22 06:59:28,293 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-22 09:00:37] 2026-04-22 06:59:28,293 | INFO     | **************************************
[2026-04-22 09:00:37] 2026-04-22 06:59:28,293 | INFO     | 
[2026-04-22 09:00:37] 2026-04-22 06:59:28,294 | INFO     | pilot is running in a VM
[2026-04-22 09:00:37] 2026-04-22 06:59:28,294 | INFO     | architecture information:
[2026-04-22 09:00:37] 2026-04-22 06:59:28,301 | INFO     | executing command: cat /etc/os-release
[2026-04-22 09:00:37] 2026-04-22 06:59:28,652 | INFO     | cat /etc/os-release:
[2026-04-22 09:00:37] NAME="CentOS Linux"
[2026-04-22 09:00:37] VERSION="7 (Core)"
[2026-04-22 09:00:37] ID="centos"
[2026-04-22 09:00:37] ID_LIKE="rhel fedora"
[2026-04-22 09:00:37] VERSION_ID="7"
[2026-04-22 09:00:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-22 09:00:37] ANSI_COLOR="0;31"
[2026-04-22 09:00:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-22 09:00:37] HOME_URL="https://www.centos.org/"
[2026-04-22 09:00:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-22 09:00:37] 
[2026-04-22 09:00:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-22 09:00:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-22 09:00:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-22 09:00:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-22 09:00:37] 
[2026-04-22 09:00:37] 2026-04-22 06:59:28,652 | INFO     | **************************************
[2026-04-22 09:00:37] 2026-04-22 06:59:29,156 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2026-04-22 09:00:37] 2026-04-22 06:59:29,433 | INFO     | sufficient remaining disk space (493970522112 B)
[2026-04-22 09:00:37] 2026-04-22 06:59:29,434 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-22 09:00:37] 2026-04-22 06:59:29,434 | INFO     | current server update state: UPDATING_FINAL
[2026-04-22 09:00:37] 2026-04-22 06:59:29,434 | INFO     | update_server=False
[2026-04-22 09:00:37] 2026-04-22 06:59:29,434 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-22 09:00:37] 2026-04-22 06:59:29,435 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-22 09:00:37] 2026-04-22 06:59:29,436 | INFO     | all data control threads have been joined
[2026-04-22 09:00:37] 2026-04-22 06:59:29,439 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-22 09:00:37] 2026-04-22 06:59:29,863 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-22 09:00:37] 2026-04-22 06:59:29,863 | INFO     | aborting loop
[2026-04-22 09:00:37] 2026-04-22 06:59:30,215 | INFO     | all payload control threads have been joined
[2026-04-22 09:00:37] 2026-04-22 06:59:30,442 | INFO     | [data] control thread has finished
[2026-04-22 09:00:37] 2026-04-22 06:59:30,443 | INFO     | [job] retrieve thread has finished
[2026-04-22 09:00:37] 2026-04-22 06:59:30,480 | INFO     | [data] copytool_in thread has finished
[2026-04-22 09:00:37] 2026-04-22 06:59:30,494 | INFO     | [payload] validate_pre thread has finished
[2026-04-22 09:00:37] 2026-04-22 06:59:30,642 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-22 09:00:37] 2026-04-22 06:59:30,815 | INFO     | [job] create_data_payload thread has finished
[2026-04-22 09:00:37] 2026-04-22 06:59:30,869 | INFO     | [job] job monitor thread has finished
[2026-04-22 09:00:37] 2026-04-22 06:59:30,965 | INFO     | [payload] failed_post thread has finished
[2026-04-22 09:00:37] 2026-04-22 06:59:31,066 | INFO     | all job control threads have been joined
[2026-04-22 09:00:37] 2026-04-22 06:59:31,152 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-22 09:00:37] 2026-04-22 06:59:31,221 | INFO     | [payload] control thread has finished
[2026-04-22 09:00:37] 2026-04-22 06:59:31,270 | INFO     | [job] validate thread has finished
[2026-04-22 09:00:37] 2026-04-22 06:59:31,409 | INFO     | [payload] validate_post thread has finished
[2026-04-22 09:00:37] 2026-04-22 06:59:31,446 | INFO     | [data] copytool_out thread has finished
[2026-04-22 09:00:37] 2026-04-22 06:59:31,647 | INFO     | [payload] execute_payloads thread has finished
[2026-04-22 09:00:37] 2026-04-22 06:59:31,648 | INFO     | [job] queue monitor thread has finished
[2026-04-22 09:00:37] 2026-04-22 06:59:32,073 | INFO     | [job] control thread has finished
[2026-04-22 09:00:37] 2026-04-22 06:59:33,444 | INFO     | [data] queue_monitor thread has finished
[2026-04-22 09:00:37] 2026-04-22 06:59:57,950 | INFO     | PID=30396 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-22 09:00:37] 2026-04-22 06:59:57,950 | INFO     | .. there are 2 such processes running
[2026-04-22 09:00:37] 2026-04-22 06:59:57,950 | INFO     | found 0 job(s) in 20 queues
[2026-04-22 09:00:37] 2026-04-22 06:59:57,950 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-22 09:00:37] 2026-04-22 06:59:57,950 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-22 09:00:37] 2026-04-22 07:00:26,913 | INFO     | [monitor] cgroup control has ended
[2026-04-22 09:00:37] 2026-04-22 07:00:27,625 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139758963705664)>', '<ExcThread(monitor, started 139758672000768)>']
[2026-04-22 09:00:37] 2026-04-22 07:00:28,129 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-22 09:00:37] 2026-04-22 07:00:28,130 | INFO     | [monitor] control thread has ended
[2026-04-22 09:00:37] 2026-04-22 07:00:32,651 | INFO     | all workflow threads have been joined
[2026-04-22 09:00:37] 2026-04-22 07:00:32,651 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-22 09:00:37] 2026-04-22 07:00:32,651 | INFO     | traces error code: 0
[2026-04-22 09:00:37] 2026-04-22 07:00:32,651 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-22 09:00:37] 2026-04-22 07:00:33,008 [wrapper] ==== pilot stdout END ====
[2026-04-22 09:00:37] 2026-04-22 07:00:33,023 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-22 09:00:37] 2026-04-22 07:00:33,038 [wrapper] pilotpid: 30396
[2026-04-22 09:00:37] 2026-04-22 07:00:33,052 [wrapper] Pilot exit status: 0
[2026-04-22 09:00:37] 2026-04-22 07:00:33,354 [wrapper] pandaids: 7105352496
[2026-04-22 09:00:37] 2026-04-22 07:00:34,543 [wrapper] cleanup supervisor_pilot  8968 30397
[2026-04-22 09:00:37] 2026-04-22 07:00:34,626 [wrapper] Test setup, not cleaning
[2026-04-22 09:00:37] 2026-04-22 07:00:34,713 [wrapper] apfmon messages muted
[2026-04-22 09:00:37] 2026-04-22 07:00:34,764 [wrapper] ==== wrapper stdout END ====
[2026-04-22 09:00:37] 2026-04-22 07:00:34,850 [wrapper] ==== wrapper stderr END ====
[2026-04-22 09:00:37]  *** Error codes and diagnostics ***
[2026-04-22 09:00:37]     "exeErrorCode": 0,
[2026-04-22 09:00:37]     "pilotErrorCode": 0,
[2026-04-22 09:00:37]  *** Listing of results directory ***
[2026-04-22 09:00:37] total 2456744
[2026-04-22 09:00:37] -rwx------. 1 boinc boinc      36322 Apr 21 13:06 runpilot2-wrapper.sh
[2026-04-22 09:00:37] -rw-r--r--. 1 boinc boinc     644190 Apr 21 14:13 pilot3.tar.gz
[2026-04-22 09:00:37] -rw-r--r--. 1 boinc boinc       5094 Apr 21 14:27 queuedata.json
[2026-04-22 09:00:37] -rw-r--r--. 1 boinc boinc        100 Apr 22 04:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-22 09:00:37] -rwxr-xr-x. 1 boinc boinc       7986 Apr 22 04:21 run_atlas
[2026-04-22 09:00:37] -rw-r--r--. 1 boinc boinc        105 Apr 22 04:21 job.xml
[2026-04-22 09:00:37] -rw-r--r--. 2 boinc boinc 2230728725 Apr 22 04:21 EVNT.49820242._000038.pool.root.1
[2026-04-22 09:00:37] -rw-r--r--. 2 boinc boinc      15665 Apr 22 04:21 start_atlas.sh
[2026-04-22 09:00:37] drwxrwx--x. 2 boinc boinc         68 Apr 22 04:21 shared
[2026-04-22 09:00:37] -rw-r--r--. 2 boinc boinc     656927 Apr 22 04:21 input.tar.gz
[2026-04-22 09:00:37] -rw-r--r--. 1 boinc boinc       6307 Apr 22 04:21 init_data.xml
[2026-04-22 09:00:37] -rw-r--r--. 1 boinc boinc          0 Apr 22 04:21 boinc_lockfile
[2026-04-22 09:00:37] -rw-r--r--. 1 boinc boinc       2551 Apr 22 04:21 pandaJob.out
[2026-04-22 09:00:37] -rw-------. 1 boinc boinc     997066 Apr 22 04:21 agis_schedconf.cvmfs.json
[2026-04-22 09:00:37] -rw-------. 1 boinc boinc        413 Apr 22 04:21 workernode_map.json
[2026-04-22 09:00:37] drwx------. 5 boinc boinc       4096 Apr 22 04:21 pilot3
[2026-04-22 09:00:37] -rw-------. 1 boinc boinc  276892334 Apr 22 08:57 HITS.49820244._014503.pool.root.1
[2026-04-22 09:00:37] -rw-r--r--. 1 boinc boinc        489 Apr 22 08:57 boinc_task_state.xml
[2026-04-22 09:00:37] -rw-------. 1 boinc boinc       1010 Apr 22 08:59 memory_monitor_summary.json
[2026-04-22 09:00:37] -rw-------. 1 boinc boinc    1509089 Apr 22 08:59 agis_ddmendpoints.agis.ALL.json
[2026-04-22 09:00:37] -rw-------. 1 boinc boinc     479730 Apr 22 08:59 log.49820244._014503.job.log.tgz.1
[2026-04-22 09:00:37] -rw-------. 1 boinc boinc         95 Apr 22 08:59 pilot_heartbeat.json
[2026-04-22 09:00:37] -rw-------. 1 boinc boinc       6328 Apr 22 08:59 heartbeat_new.json
[2026-04-22 09:00:37] -rw-------. 1 boinc boinc       6219 Apr 22 08:59 heartbeat.json
[2026-04-22 09:00:37] -rw-r--r--. 1 boinc boinc       8192 Apr 22 09:00 boinc_mmap_file
[2026-04-22 09:00:37] -rw-r--r--. 1 boinc boinc         28 Apr 22 09:00 wrapper_checkpoint.txt
[2026-04-22 09:00:37] -rw-------. 1 boinc boinc       4880 Apr 22 09:00 pilotlog.txt
[2026-04-22 09:00:37] -rw-------. 1 boinc boinc    1540198 Apr 22 09:00 log.49820244._014503.job.log.1
[2026-04-22 09:00:37] -rw-------. 1 boinc boinc        357 Apr 22 09:00 output.list
[2026-04-22 09:00:37] -rw-r--r--. 1 boinc boinc        410 Apr 22 09:00 runtime_log
[2026-04-22 09:00:37] -rw-------. 1 boinc boinc    2037760 Apr 22 09:00 result.tar.gz
[2026-04-22 09:00:37] -rw-r--r--. 1 boinc boinc       8454 Apr 22 09:00 runtime_log.err
[2026-04-22 09:00:37] -rw-------. 1 boinc boinc        655 Apr 22 09:00 5a19a5b6807d.diag
[2026-04-22 09:00:37] -rw-r--r--. 1 boinc boinc      20616 Apr 22 09:00 stderr.txt
[2026-04-22 09:00:37] HITS file was successfully produced:
[2026-04-22 09:00:37] -rw-------. 1 boinc boinc 276892334 Apr 22 08:57 shared/HITS.pool.root.1
[2026-04-22 09:00:37]  *** Contents of shared directory: ***
[2026-04-22 09:00:37] total 2451504
[2026-04-22 09:00:37] -rw-r--r--. 2 boinc boinc 2230728725 Apr 22 04:21 ATLAS.root_0
[2026-04-22 09:00:37] -rw-r--r--. 2 boinc boinc      15665 Apr 22 04:21 start_atlas.sh
[2026-04-22 09:00:37] -rw-r--r--. 2 boinc boinc     656927 Apr 22 04:21 input.tar.gz
[2026-04-22 09:00:37] -rw-------. 1 boinc boinc  276892334 Apr 22 08:57 HITS.pool.root.1
[2026-04-22 09:00:37] -rw-------. 1 boinc boinc    2037760 Apr 22 09:00 result.tar.gz
09:00:39 (26354): run_atlas exited; CPU time 86333.733677
09:00:39 (26354): called boinc_finish(0)

</stderr_txt>
]]>

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