Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:40:56 (28798): wrapper (7.7.26015): starting
13:40:56 (28798): wrapper: running run_atlas (--nthreads 8)
[2026-04-21 13:40:56] Arguments: --nthreads 8
[2026-04-21 13:40:56] Threads: 8
[2026-04-21 13:40:56] Checking for CVMFS
[2026-04-21 13:40:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-21 13:40:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-21 13:40:57] Running cvmfs_config stat atlas.cern.ch
[2026-04-21 13:40:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-21 13:40:57] 2.11.2.0 18601 312418 137932 158698 0 17 16755765 18432000 114 130560 0 180104543 99.987 10929138 25384 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-04-21 13:40:57] CVMFS is ok
[2026-04-21 13:40:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-21 13:40:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-21 13:40:57] Further information can be found at the LHC@home message board.
[2026-04-21 13:40:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-21 13:40:57] Checking for apptainer binary...
[2026-04-21 13:40:57] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-21 13:40:57] Running /usr/bin/apptainer --version
[2026-04-21 13:40:57] apptainer version 1.3.2-1.el7
[2026-04-21 13:40:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-21 13:40:58] c-206-13.aglt2.org
[2026-04-21 13:40:58] apptainer works
[2026-04-21 13:40:58] Set ATHENA_PROC_NUMBER=8
[2026-04-21 13:40:58] Set ATHENA_CORE_NUMBER=8
[2026-04-21 13:40:58] Starting ATLAS job with PandaID=7105410866
[2026-04-21 13:40:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-21 16:41:39]  *** The last 200 lines of the pilot log: ***
[2026-04-21 16:41:39] 2026-04-21 20:40:52,222 | INFO     | mean y: 2486869.694915254
[2026-04-21 16:41:39] 2026-04-21 20:40:52,222 | INFO     | intersect: 2486869.694915254
[2026-04-21 16:41:39] 2026-04-21 20:40:52,223 | INFO     | chi2: 2.182646997133009
[2026-04-21 16:41:39] 2026-04-21 20:40:52,223 | INFO     | sum of square deviations: 1577789583.0
[2026-04-21 16:41:39] 2026-04-21 20:40:52,224 | INFO     | sum of deviations: 25424191280.999996
[2026-04-21 16:41:39] 2026-04-21 20:40:52,224 | INFO     | mean x (centered): 0.0
[2026-04-21 16:41:39] 2026-04-21 20:40:52,224 | INFO     | mean y: 2498575.2325581396
[2026-04-21 16:41:39] 2026-04-21 20:40:52,224 | INFO     | intersect: 2498575.2325581396
[2026-04-21 16:41:39] 2026-04-21 20:40:52,224 | INFO     | chi2: 1.407508424192706
[2026-04-21 16:41:39] 2026-04-21 20:40:52,224 | INFO     | current chi2=1.407508424192706 (change=35.51369387530267 %)
[2026-04-21 16:41:39] 2026-04-21 20:40:52,225 | INFO     | sum of square deviations: 1444149868.0
[2026-04-21 16:41:39] 2026-04-21 20:40:52,225 | INFO     | sum of deviations: 24565437063.0
[2026-04-21 16:41:39] 2026-04-21 20:40:52,225 | INFO     | mean x (centered): 0.0
[2026-04-21 16:41:39] 2026-04-21 20:40:52,225 | INFO     | mean y: 2497595.5628742515
[2026-04-21 16:41:39] 2026-04-21 20:40:52,226 | INFO     | intersect: 2497595.5628742515
[2026-04-21 16:41:39] 2026-04-21 20:40:52,226 | INFO     | chi2: 1.4085654117768927
[2026-04-21 16:41:39] 2026-04-21 20:40:52,226 | INFO     | current chi2=1.4085654117768927 (change=-0.07509635935520922 %)
[2026-04-21 16:41:39] 2026-04-21 20:40:52,226 | INFO     | right removable region: 166
[2026-04-21 16:41:39] 2026-04-21 20:40:52,226 | INFO     | sum of square deviations: 1577789583.0
[2026-04-21 16:41:39] 2026-04-21 20:40:52,227 | INFO     | sum of deviations: -12730733794.0
[2026-04-21 16:41:39] 2026-04-21 20:40:52,227 | INFO     | mean x (centered): 0.0
[2026-04-21 16:41:39] 2026-04-21 20:40:52,227 | INFO     | mean y: 2515610.5
[2026-04-21 16:41:39] 2026-04-21 20:40:52,227 | INFO     | intersect: 2515610.5
[2026-04-21 16:41:39] 2026-04-21 20:40:52,228 | INFO     | chi2: 0.8089367018925253
[2026-04-21 16:41:39] 2026-04-21 20:40:52,228 | INFO     | current chi2=0.8089367018925253 (change=62.93781344600868 %)
[2026-04-21 16:41:39] 2026-04-21 20:40:52,228 | INFO     | sum of square deviations: 1444149868.0
[2026-04-21 16:41:39] 2026-04-21 20:40:52,229 | INFO     | sum of deviations: -11977617302.0
[2026-04-21 16:41:39] 2026-04-21 20:40:52,229 | INFO     | mean x (centered): 0.0
[2026-04-21 16:41:39] 2026-04-21 20:40:52,229 | INFO     | mean y: 2514742.125748503
[2026-04-21 16:41:39] 2026-04-21 20:40:52,229 | INFO     | intersect: 2514742.125748503
[2026-04-21 16:41:39] 2026-04-21 20:40:52,229 | INFO     | chi2: 0.8090029204481738
[2026-04-21 16:41:39] 2026-04-21 20:40:52,230 | INFO     | current chi2=0.8090029204481738 (change=-0.00818587603870101 %)
[2026-04-21 16:41:39] 2026-04-21 20:40:52,230 | INFO     | left removable region: 10
[2026-04-21 16:41:39] 2026-04-21 20:40:52,230 | INFO     | sum of square deviations: 1177156955.0
[2026-04-21 16:41:39] 2026-04-21 20:40:52,231 | INFO     | sum of deviations: -831351401.5
[2026-04-21 16:41:39] 2026-04-21 20:40:52,231 | INFO     | mean x (centered): 0.0
[2026-04-21 16:41:39] 2026-04-21 20:40:52,231 | INFO     | mean y: 2527911.6474358975
[2026-04-21 16:41:39] 2026-04-21 20:40:52,231 | INFO     | intersect: 2527911.6474358975
[2026-04-21 16:41:39] 2026-04-21 20:40:52,231 | INFO     | chi2: 0.010828881302497033
[2026-04-21 16:41:39] 2026-04-21 20:40:52,231 | INFO     | current memory leak: -0.71 B/s (using 156 data points, chi2=0.01)
[2026-04-21 16:41:39] 2026-04-21 20:40:52,231 | INFO     | could have reported an average CPU frequency of 1784 MHz (9 samples)
[2026-04-21 16:41:39] 2026-04-21 20:40:52,232 | INFO     | ..............................
[2026-04-21 16:41:39] 2026-04-21 20:40:52,232 | INFO     | . Timing measurements:
[2026-04-21 16:41:39] 2026-04-21 20:40:52,232 | INFO     | . get job = 0 s
[2026-04-21 16:41:39] 2026-04-21 20:40:52,232 | INFO     | . initial setup = 6 s
[2026-04-21 16:41:39] 2026-04-21 20:40:52,232 | INFO     | . payload setup = 10 s
[2026-04-21 16:41:39] 2026-04-21 20:40:52,232 | INFO     | . stage-in = 0 s
[2026-04-21 16:41:39] 2026-04-21 20:40:52,232 | INFO     | . payload execution = 10748 s
[2026-04-21 16:41:39] 2026-04-21 20:40:52,232 | INFO     | . stage-out = 0 s
[2026-04-21 16:41:39] 2026-04-21 20:40:52,232 | INFO     | . log creation = 0 s
[2026-04-21 16:41:39] 2026-04-21 20:40:52,233 | INFO     | ..............................
[2026-04-21 16:41:39] 2026-04-21 20:40:52,307 | INFO     | 
[2026-04-21 16:41:39] 2026-04-21 20:40:52,308 | INFO     | job summary report
[2026-04-21 16:41:39] 2026-04-21 20:40:52,309 | INFO     | --------------------------------------------------
[2026-04-21 16:41:39] 2026-04-21 20:40:52,309 | INFO     | PanDA job id: 7105410866
[2026-04-21 16:41:39] 2026-04-21 20:40:52,309 | INFO     | task id: 49545114
[2026-04-21 16:41:39] 2026-04-21 20:40:52,309 | INFO     | errors: (none)
[2026-04-21 16:41:39] 2026-04-21 20:40:52,309 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-21 16:41:39] 2026-04-21 20:40:52,310 | INFO     | pilot state: finished 
[2026-04-21 16:41:39] 2026-04-21 20:40:52,310 | INFO     | transexitcode: 0
[2026-04-21 16:41:39] 2026-04-21 20:40:52,310 | INFO     | exeerrorcode: 0
[2026-04-21 16:41:39] 2026-04-21 20:40:52,310 | INFO     | exeerrordiag: 
[2026-04-21 16:41:39] 2026-04-21 20:40:52,310 | INFO     | exitcode: 0
[2026-04-21 16:41:39] 2026-04-21 20:40:52,310 | INFO     | exitmsg: OK
[2026-04-21 16:41:39] 2026-04-21 20:40:52,310 | INFO     | cpuconsumptiontime: 82642 s
[2026-04-21 16:41:39] 2026-04-21 20:40:52,310 | INFO     | nevents: 400
[2026-04-21 16:41:39] 2026-04-21 20:40:52,310 | INFO     | neventsw: 0
[2026-04-21 16:41:39] 2026-04-21 20:40:52,310 | INFO     | pid: 21884
[2026-04-21 16:41:39] 2026-04-21 20:40:52,311 | INFO     | pgrp: 21884
[2026-04-21 16:41:39] 2026-04-21 20:40:52,311 | INFO     | corecount: 8
[2026-04-21 16:41:39] 2026-04-21 20:40:52,311 | INFO     | event service: False
[2026-04-21 16:41:39] 2026-04-21 20:40:52,311 | INFO     | sizes: {0: 2274041, 1: 2276527, 12: 2276527, 10761: 2305485, 10762: 2314539, 10764: 2314741}
[2026-04-21 16:41:39] 2026-04-21 20:40:52,311 | INFO     | --------------------------------------------------
[2026-04-21 16:41:39] 2026-04-21 20:40:52,311 | INFO     | 
[2026-04-21 16:41:39] 2026-04-21 20:40:52,311 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-04-21 16:41:39] 2026-04-21 20:40:52,328 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-21 16:41:39] 2026-04-21 20:40:52,329 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-21 16:41:39] 2026-04-21 20:40:52,329 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-21 16:41:39] 2026-04-21 20:40:52,329 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-21 16:41:39] 2026-04-21 20:40:52,329 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-21 16:41:39] 2026-04-21 20:40:52,329 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-21 16:41:39] 2026-04-21 20:40:52,329 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-21 16:41:39] 2026-04-21 20:40:52,329 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-21 16:41:39] 2026-04-21 20:40:52,329 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-21 16:41:39] 2026-04-21 20:40:52,330 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-21 16:41:39] 2026-04-21 20:40:52,330 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-21 16:41:39] 2026-04-21 20:40:52,330 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-21 16:41:39] 2026-04-21 20:40:52,330 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-21 16:41:39] 2026-04-21 20:40:52,330 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-21 16:41:39] 2026-04-21 20:40:52,330 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-21 16:41:39] 2026-04-21 20:40:52,330 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-21 16:41:39] 2026-04-21 20:40:52,330 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-21 16:41:39] 2026-04-21 20:40:52,330 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-21 16:41:39] 2026-04-21 20:40:52,331 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-21 16:41:39] 2026-04-21 20:40:52,331 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-21 16:41:39] 2026-04-21 20:40:52,331 | INFO     | job 7105410866 has completed (purged errors)
[2026-04-21 16:41:39] 2026-04-21 20:40:52,331 | INFO     | overall cleanup function is called
[2026-04-21 16:41:39] 2026-04-21 20:40:52,614 | WARNING  | process 21884 can no longer be monitored (due to stat problems) - aborting
[2026-04-21 16:41:39] 2026-04-21 20:40:52,686 | INFO     | using path: /tmp/boinchome/slots/2/memory_monitor_summary.json (trf name=prmon)
[2026-04-21 16:41:39] 2026-04-21 20:40:52,687 | INFO     | using path: /tmp/boinchome/slots/2/memory_monitor_summary.json (trf name=prmon)
[2026-04-21 16:41:39] 2026-04-21 20:40:52,687 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-04-21 16:41:39] 2026-04-21 20:40:52,687 | WARNING  | maxPSS not found in memory monitor output
[2026-04-21 16:41:39] 2026-04-21 20:40:52,688 | INFO     | skipping file size check of payload stdout file (/tmp/boinchome/slots/2/PanDA_Pilot-7105410866/payload.stdout) since it has not been created yet
[2026-04-21 16:41:39] 2026-04-21 20:40:52,688 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-04-21 16:41:39] 2026-04-21 20:40:52,700 | INFO     | sufficient remaining disk space (28428992512 B)
[2026-04-21 16:41:39] 2026-04-21 20:40:52,700 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-04-21 16:41:39] 2026-04-21 20:40:52,700 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/2/PanDA_Pilot-7105410866/HITS.49545114._034055.pool.root.1 since it does not exist
[2026-04-21 16:41:39] 2026-04-21 20:40:52,792 | INFO     | number of running child processes to parent process 21884: 1
[2026-04-21 16:41:39] 2026-04-21 20:40:52,792 | INFO     | maximum number of monitored processes: 6
[2026-04-21 16:41:39] 2026-04-21 20:40:52,792 | INFO     | aborting job monitoring since job object (job id=7105410866) has expired
[2026-04-21 16:41:39] 2026-04-21 20:40:53,338 | INFO     | --- collectZombieJob: --- 10, [21884]
[2026-04-21 16:41:39] 2026-04-21 20:40:53,338 | INFO     | zombie collector waiting for pid 21884
[2026-04-21 16:41:39] 2026-04-21 20:40:53,338 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-21 16:41:39] 2026-04-21 20:40:53,339 | INFO     | collected zombie processes
[2026-04-21 16:41:39] 2026-04-21 20:40:53,339 | INFO     | will attempt to kill all subprocesses of pid=21884
[2026-04-21 16:41:39] 2026-04-21 20:40:53,430 | INFO     | process IDs to be killed: [21884] (in reverse order)
[2026-04-21 16:41:39] 2026-04-21 20:40:53,475 | WARNING  | found no corresponding commands to process id(s)
[2026-04-21 16:41:39] 2026-04-21 20:40:53,475 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-21 16:41:39] 2026-04-21 20:40:53,478 | INFO     | did not find any defunct processes belonging to 21884
[2026-04-21 16:41:39] 2026-04-21 20:40:53,480 | INFO     | did not find any defunct processes belonging to 21884
[2026-04-21 16:41:39] 2026-04-21 20:40:53,480 | INFO     | Ready for new job
[2026-04-21 16:41:39] 2026-04-21 20:40:53,482 | INFO     | **************************************
[2026-04-21 16:41:39] 2026-04-21 20:40:53,482 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-21 16:41:39] 2026-04-21 20:40:53,482 | INFO     | **************************************
[2026-04-21 16:41:39] 2026-04-21 20:40:53,482 | INFO     | 
[2026-04-21 16:41:39] 2026-04-21 20:40:53,483 | INFO     | architecture information:
[2026-04-21 16:41:39] 2026-04-21 20:40:53,483 | INFO     | executing command: cat /etc/os-release
[2026-04-21 16:41:39] 2026-04-21 20:40:53,495 | INFO     | cat /etc/os-release:
[2026-04-21 16:41:39] NAME="CentOS Linux"
[2026-04-21 16:41:39] VERSION="7 (Core)"
[2026-04-21 16:41:39] ID="centos"
[2026-04-21 16:41:39] ID_LIKE="rhel fedora"
[2026-04-21 16:41:39] VERSION_ID="7"
[2026-04-21 16:41:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-21 16:41:39] ANSI_COLOR="0;31"
[2026-04-21 16:41:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-21 16:41:39] HOME_URL="https://www.centos.org/"
[2026-04-21 16:41:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-21 16:41:39] 
[2026-04-21 16:41:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-21 16:41:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-21 16:41:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-21 16:41:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-21 16:41:39] 
[2026-04-21 16:41:39] 2026-04-21 20:40:53,495 | INFO     | **************************************
[2026-04-21 16:41:39] 2026-04-21 20:40:53,998 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-04-21 16:41:39] 2026-04-21 20:40:54,011 | INFO     | sufficient remaining disk space (28430041088 B)
[2026-04-21 16:41:39] 2026-04-21 20:40:54,012 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-21 16:41:39] 2026-04-21 20:40:54,012 | INFO     | current server update state: UPDATING_FINAL
[2026-04-21 16:41:39] 2026-04-21 20:40:54,012 | INFO     | update_server=False
[2026-04-21 16:41:39] 2026-04-21 20:40:54,012 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-21 16:41:39] 2026-04-21 20:40:54,012 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-21 16:41:39] 2026-04-21 20:40:54,013 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-21 16:41:39] 2026-04-21 20:40:54,013 | INFO     | aborting loop
[2026-04-21 16:41:39] 2026-04-21 20:40:54,096 | INFO     | all job control threads have been joined
[2026-04-21 16:41:39] 2026-04-21 20:40:54,987 | INFO     | all data control threads have been joined
[2026-04-21 16:41:39] 2026-04-21 20:40:55,017 | INFO     | [job] retrieve thread has finished
[2026-04-21 16:41:39] 2026-04-21 20:40:55,018 | INFO     | [job] queue monitor thread has finished
[2026-04-21 16:41:39] 2026-04-21 20:40:55,019 | INFO     | [job] job monitor thread has finished
[2026-04-21 16:41:39] 2026-04-21 20:40:55,102 | INFO     | [job] control thread has finished
[2026-04-21 16:41:39] 2026-04-21 20:40:55,201 | INFO     | all payload control threads have been joined
[2026-04-21 16:41:39] 2026-04-21 20:40:55,460 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-21 16:41:39] 2026-04-21 20:40:55,523 | INFO     | [payload] failed_post thread has finished
[2026-04-21 16:41:39] 2026-04-21 20:40:55,929 | INFO     | [data] copytool_in thread has finished
[2026-04-21 16:41:39] 2026-04-21 20:40:55,929 | INFO     | [job] create_data_payload thread has finished
[2026-04-21 16:41:39] 2026-04-21 20:40:55,967 | INFO     | [payload] validate_pre thread has finished
[2026-04-21 16:41:39] 2026-04-21 20:40:55,972 | INFO     | [job] validate thread has finished
[2026-04-21 16:41:39] 2026-04-21 20:40:55,993 | INFO     | [data] control thread has finished
[2026-04-21 16:41:39] 2026-04-21 20:40:56,033 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-21 16:41:39] 2026-04-21 20:40:56,111 | INFO     | [payload] execute_payloads thread has finished
[2026-04-21 16:41:39] 2026-04-21 20:40:56,202 | INFO     | [payload] control thread has finished
[2026-04-21 16:41:39] 2026-04-21 20:40:56,592 | INFO     | [payload] validate_post thread has finished
[2026-04-21 16:41:39] 2026-04-21 20:40:57,466 | INFO     | [data] copytool_out thread has finished
[2026-04-21 16:41:39] 2026-04-21 20:41:00,039 | INFO     | [data] queue_monitor thread has finished
[2026-04-21 16:41:39] 2026-04-21 20:41:04,459 | INFO     | job.realtimelogging is not enabled
[2026-04-21 16:41:39] 2026-04-21 20:41:05,464 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-21 16:41:39] 2026-04-21 20:41:09,470 [wrapper] supervise_pilot (15 min periods counter: 13)
[2026-04-21 16:41:39] 2026-04-21 20:41:24,045 | INFO     | PID=4968 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-04-21 16:41:39] 2026-04-21 20:41:24,046 | INFO     | .. there are 2 such processes running
[2026-04-21 16:41:39] 2026-04-21 20:41:24,053 | INFO     | found 0 job(s) in 20 queues
[2026-04-21 16:41:39] 2026-04-21 20:41:24,053 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-21 16:41:39] 2026-04-21 20:41:24,053 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-21 16:41:39] 2026-04-21 20:41:33,702 | INFO     | [monitor] cgroup control has ended
[2026-04-21 16:41:39] 2026-04-21 20:41:33,777 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140306573571904)>', '<ExcThread(monitor, started 140305743460096)>']
[2026-04-21 16:41:39] 2026-04-21 20:41:34,104 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-21 16:41:39] 2026-04-21 20:41:34,105 | INFO     | [monitor] control thread has ended
[2026-04-21 16:41:39] 2026-04-21 20:41:38,802 | INFO     | all workflow threads have been joined
[2026-04-21 16:41:39] 2026-04-21 20:41:38,803 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-21 16:41:39] 2026-04-21 20:41:38,803 | INFO     | traces error code: 0
[2026-04-21 16:41:39] 2026-04-21 20:41:38,803 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-21 16:41:39] 2026-04-21 20:41:38,892 [wrapper] ==== pilot stdout END ====
[2026-04-21 16:41:39] 2026-04-21 20:41:38,896 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-21 16:41:39] 2026-04-21 20:41:38,899 [wrapper] pilotpid: 4968
[2026-04-21 16:41:39] 2026-04-21 20:41:38,902 [wrapper] Pilot exit status: 0
[2026-04-21 16:41:39] 2026-04-21 20:41:38,916 [wrapper] pandaids: 7105410866
[2026-04-21 16:41:39] 2026-04-21 20:41:38,957 [wrapper] cleanup supervisor_pilot 10299 4969
[2026-04-21 16:41:39] 2026-04-21 20:41:38,960 [wrapper] Test setup, not cleaning
[2026-04-21 16:41:39] 2026-04-21 20:41:38,964 [wrapper] apfmon messages muted
[2026-04-21 16:41:39] 2026-04-21 20:41:38,967 [wrapper] ==== wrapper stdout END ====
[2026-04-21 16:41:39] 2026-04-21 20:41:38,971 [wrapper] ==== wrapper stderr END ====
[2026-04-21 16:41:39]  *** Error codes and diagnostics ***
[2026-04-21 16:41:39]     "exeErrorCode": 0,
[2026-04-21 16:41:39]     "pilotErrorCode": 0,
[2026-04-21 16:41:39]  *** Listing of results directory ***
[2026-04-21 16:41:39] total 465984
[2026-04-21 16:41:39] -rwx------ 1 boincer umatlas     36322 Apr 21 07:05 runpilot2-wrapper.sh
[2026-04-21 16:41:39] -rw-r--r-- 1 boincer umatlas    644190 Apr 21 08:13 pilot3.tar.gz
[2026-04-21 16:41:39] -rw-r--r-- 1 boincer umatlas      5094 Apr 21 08:23 queuedata.json
[2026-04-21 16:41:39] -rw-r--r-- 1 boincer umatlas       100 Apr 21 13:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-21 16:41:39] -rwxr-xr-x 1 boincer umatlas      7986 Apr 21 13:40 run_atlas
[2026-04-21 16:41:39] -rw-r--r-- 1 boincer umatlas       105 Apr 21 13:40 job.xml
[2026-04-21 16:41:39] -rw-r--r-- 2 boincer umatlas 280868428 Apr 21 13:40 EVNT.49539591._000301.pool.root.1
[2026-04-21 16:41:39] -rw-r--r-- 2 boincer umatlas     15665 Apr 21 13:40 start_atlas.sh
[2026-04-21 16:41:39] drwxrwx--x 2 boincer umatlas      4096 Apr 21 13:40 shared
[2026-04-21 16:41:39] -rw-r--r-- 2 boincer umatlas    656948 Apr 21 13:40 input.tar.gz
[2026-04-21 16:41:39] -rw-r--r-- 1 boincer umatlas         0 Apr 21 13:40 boinc_lockfile
[2026-04-21 16:41:39] -rw-r--r-- 1 boincer umatlas      2604 Apr 21 13:40 pandaJob.out
[2026-04-21 16:41:39] -rw------- 1 boincer umatlas        57 Apr 21 13:40 setup.sh.local
[2026-04-21 16:41:39] -rw------- 1 boincer umatlas    994998 Apr 21 13:41 agis_schedconf.cvmfs.json
[2026-04-21 16:41:39] -rw------- 1 boincer umatlas   1509089 Apr 21 13:41 agis_ddmendpoints.agis.ALL.json
[2026-04-21 16:41:39] -rw------- 1 boincer umatlas       445 Apr 21 13:41 workernode_map.json
[2026-04-21 16:41:39] drwx------ 5 boincer umatlas      4096 Apr 21 13:41 pilot3
[2026-04-21 16:41:39] -rw-r--r-- 1 boincer umatlas      5867 Apr 21 16:38 init_data.xml
[2026-04-21 16:41:39] -rw------- 1 boincer umatlas 189516459 Apr 21 16:40 HITS.49545114._034055.pool.root.1
[2026-04-21 16:41:39] -rw-r--r-- 1 boincer umatlas       488 Apr 21 16:40 boinc_task_state.xml
[2026-04-21 16:41:39] -rw------- 1 boincer umatlas      1062 Apr 21 16:40 memory_monitor_summary.json
[2026-04-21 16:41:39] -rw------- 1 boincer umatlas    359766 Apr 21 16:40 log.49545114._034055.job.log.tgz.1
[2026-04-21 16:41:39] -rw------- 1 boincer umatlas      6439 Apr 21 16:40 heartbeat_new.json
[2026-04-21 16:41:39] -rw------- 1 boincer umatlas      6330 Apr 21 16:40 heartbeat.json
[2026-04-21 16:41:39] -rw------- 1 boincer umatlas        95 Apr 21 16:41 pilot_heartbeat.json
[2026-04-21 16:41:39] -rw-r--r-- 1 boincer umatlas      8192 Apr 21 16:41 boinc_mmap_file
[2026-04-21 16:41:39] -rw-r--r-- 1 boincer umatlas        28 Apr 21 16:41 wrapper_checkpoint.txt
[2026-04-21 16:41:39] -rw------- 1 boincer umatlas      4887 Apr 21 16:41 pilotlog.txt
[2026-04-21 16:41:39] -rw------- 1 boincer umatlas   1000336 Apr 21 16:41 log.49545114._034055.job.log.1
[2026-04-21 16:41:39] -rw------- 1 boincer umatlas       357 Apr 21 16:41 output.list
[2026-04-21 16:41:39] -rw-r--r-- 1 boincer umatlas       410 Apr 21 16:41 runtime_log
[2026-04-21 16:41:39] -rw------- 1 boincer umatlas   1382400 Apr 21 16:41 result.tar.gz
[2026-04-21 16:41:39] -rw-r--r-- 1 boincer umatlas      8964 Apr 21 16:41 runtime_log.err
[2026-04-21 16:41:39] -rw------- 1 boincer umatlas       661 Apr 21 16:41 5a0e82e99442.diag
[2026-04-21 16:41:39] -rw-r--r-- 1 boincer umatlas     21270 Apr 21 16:41 stderr.txt
[2026-04-21 16:41:39] HITS file was successfully produced:
[2026-04-21 16:41:39] -rw------- 1 boincer umatlas 189516459 Apr 21 16:40 shared/HITS.pool.root.1
[2026-04-21 16:41:39]  *** Contents of shared directory: ***
[2026-04-21 16:41:39] total 461384
[2026-04-21 16:41:39] -rw-r--r-- 2 boincer umatlas 280868428 Apr 21 13:40 ATLAS.root_0
[2026-04-21 16:41:39] -rw-r--r-- 2 boincer umatlas     15665 Apr 21 13:40 start_atlas.sh
[2026-04-21 16:41:39] -rw-r--r-- 2 boincer umatlas    656948 Apr 21 13:40 input.tar.gz
[2026-04-21 16:41:39] -rw------- 1 boincer umatlas 189516459 Apr 21 16:40 HITS.pool.root.1
[2026-04-21 16:41:39] -rw------- 1 boincer umatlas   1382400 Apr 21 16:41 result.tar.gz
16:41:40 (28798): run_atlas exited; CPU time 82765.339654
16:41:40 (28798): called boinc_finish(0)

</stderr_txt>
]]>

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