Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:11:43 (482646): wrapper (7.7.26015): starting
20:11:43 (482646): wrapper: running run_atlas (--nthreads 12)
[2026-04-21 20:11:43] Arguments: --nthreads 12
[2026-04-21 20:11:43] Threads: 12
[2026-04-21 20:11:43] Checking for CVMFS
[2026-04-21 20:11:43] No cvmfs_config command found, will try listing directly
[2026-04-21 20:11:43] CVMFS is ok
[2026-04-21 20:11:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-21 20:11:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-21 20:11:43] Further information can be found at the LHC@home message board.
[2026-04-21 20:11:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-21 20:11:43] Checking for apptainer binary...
[2026-04-21 20:11:43] which: no apptainer in ((null))
[2026-04-21 20:11:43] apptainer is not installed, using version from CVMFS
[2026-04-21 20:11:43] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-21 20:11:43] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot132/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut18.grid.cesnet.cz
[2026-04-21 20:11:43] apptainer works
[2026-04-21 20:11:43] Set ATHENA_PROC_NUMBER=12
[2026-04-21 20:11:43] Set ATHENA_CORE_NUMBER=12
[2026-04-21 20:11:43] Starting ATLAS job with PandaID=7098075652
[2026-04-21 20:11:43] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot132/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-21 20:38:11]  *** The last 200 lines of the pilot log: ***
[2026-04-21 20:38:11]  status=None
[2026-04-21 20:38:11]  status_code=0
[2026-04-21 20:38:11]  storage_token=
[2026-04-21 20:38:11]  surl=/var/lib/boinc/var/slot132/slots/1/PanDA_Pilot-7098075652/log.49545114._030752.job.log.tgz.1
[2026-04-21 20:38:11]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/90/e9/log.49545114._030752.job.log.tgz.1
[2026-04-21 20:38:11]  workdir=None
[2026-04-21 20:38:11] ]
[2026-04-21 20:38:11] 2026-04-21 18:31:58,538 | INFO     | transferring file log.49545114._030752.job.log.tgz.1 from /var/lib/boinc/var/slot132/slots/1/PanDA_Pilot-7098075652/log.49545114._030752.job.log.tgz.1 to /var/lib/
[2026-04-21 20:38:11] 2026-04-21 18:31:58,538 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot132/slots/1/PanDA_Pilot-7098075652/log.49545114._030752.job.log.tgz.1 /var/lib/boinc/var/slot132/slots/1/
[2026-04-21 20:38:11] 2026-04-21 18:31:58,550 | INFO     | adding to output.list: log.49545114._030752.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/90/e9/log.49545114._030752.job.log.tg
[2026-04-21 20:38:11] 2026-04-21 18:31:58,550 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-21 20:38:11] 2026-04-21 18:31:58,550 | INFO     | summary of transferred files:
[2026-04-21 20:38:11] 2026-04-21 18:31:58,550 | INFO     |  -- lfn=log.49545114._030752.job.log.tgz.1, status_code=0, status=transferred
[2026-04-21 20:38:11] 2026-04-21 18:31:58,550 | INFO     | stage-out finished correctly
[2026-04-21 20:38:11] 2026-04-21 18:31:59,730 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-21 20:38:11] 2026-04-21 18:32:00,722 | INFO     | PID=487517 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-21 20:38:11] 2026-04-21 18:32:00,722 | INFO     | .. there are 3 such processes running
[2026-04-21 20:38:11] 2026-04-21 18:32:02,764 | INFO     | job 7098075652 has state=finished
[2026-04-21 20:38:11] 2026-04-21 18:32:02,765 | INFO     | preparing for final server update for job 7098075652 in state='finished'
[2026-04-21 20:38:11] 2026-04-21 18:32:03,229 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-04-21 20:38:11] 2026-04-21 18:32:03,229 | INFO     | reading metadata from: /var/lib/boinc/var/slot132/slots/1/PanDA_Pilot-7098075652/jobReport.json
[2026-04-21 20:38:11] 2026-04-21 18:32:03,230 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot132/slots/1/workernode_map.json
[2026-04-21 20:38:11] 2026-04-21 18:32:03,230 | INFO     | this job has now completed (state=finished)
[2026-04-21 20:38:11] 2026-04-21 18:32:03,230 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-21 20:38:11] 2026-04-21 18:32:03,230 | INFO     | log transfer has been attempted: DONE
[2026-04-21 20:38:11] 2026-04-21 18:32:03,230 | INFO     | job 7098075652 has finished - writing final server update
[2026-04-21 20:38:11] 2026-04-21 18:32:03,230 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_8316/.job.ad'
[2026-04-21 20:38:11] 2026-04-21 18:32:03,230 | INFO     | total number of processed events: 400 (read)
[2026-04-21 20:38:11] 2026-04-21 18:32:03,239 | INFO     | using path: /var/lib/boinc/var/slot132/slots/1/PanDA_Pilot-7098075652/memory_monitor_summary.json (trf name=prmon)
[2026-04-21 20:38:11] 2026-04-21 18:32:03,240 | INFO     | extracted standard info from prmon json
[2026-04-21 20:38:11] 2026-04-21 18:32:03,240 | INFO     | extracted standard memory fields from prmon json
[2026-04-21 20:38:11] 2026-04-21 18:32:03,240 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-21 20:38:11] 2026-04-21 18:32:03,240 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-21 20:38:11] 2026-04-21 18:32:03,240 | INFO     | fitting pss+swap vs Time
[2026-04-21 20:38:11] 2026-04-21 18:32:03,240 | INFO     | sum of square deviations: 677222.0
[2026-04-21 20:38:11] 2026-04-21 18:32:03,240 | INFO     | sum of deviations: 7489519.000000003
[2026-04-21 20:38:11] 2026-04-21 18:32:03,240 | INFO     | mean x (centered): 0.0
[2026-04-21 20:38:11] 2026-04-21 18:32:03,240 | INFO     | mean y: 2737028.3846153845
[2026-04-21 20:38:11] 2026-04-21 18:32:03,240 | INFO     | intersect: 2737028.3846153845
[2026-04-21 20:38:11] 2026-04-21 18:32:03,240 | INFO     | chi2: 6.909491454662892e-05
[2026-04-21 20:38:11] 2026-04-21 18:32:03,240 | INFO     | current memory leak: 11.06 B/s (using 13 data points, chi2=0.00)
[2026-04-21 20:38:11] 2026-04-21 18:32:03,241 | INFO     | could have reported an average CPU frequency of 3602 MHz (4 samples)
[2026-04-21 20:38:11] 2026-04-21 18:32:03,241 | INFO     | ..............................
[2026-04-21 20:38:11] 2026-04-21 18:32:03,241 | INFO     | . Timing measurements:
[2026-04-21 20:38:11] 2026-04-21 18:32:03,241 | INFO     | . get job = 0 s
[2026-04-21 20:38:11] 2026-04-21 18:32:03,241 | INFO     | . initial setup = 2 s
[2026-04-21 20:38:11] 2026-04-21 18:32:03,241 | INFO     | . payload setup = 4 s
[2026-04-21 20:38:11] 2026-04-21 18:32:03,241 | INFO     | . stage-in = 0 s
[2026-04-21 20:38:11] 2026-04-21 18:32:03,241 | INFO     | . payload execution = 1188 s
[2026-04-21 20:38:11] 2026-04-21 18:32:03,241 | INFO     | . stage-out = 0 s
[2026-04-21 20:38:11] 2026-04-21 18:32:03,241 | INFO     | . log creation = 0 s
[2026-04-21 20:38:11] 2026-04-21 18:32:03,241 | INFO     | ..............................
[2026-04-21 20:38:11] 2026-04-21 18:32:03,667 | INFO     | 
[2026-04-21 20:38:11] 2026-04-21 18:32:03,668 | INFO     | job summary report
[2026-04-21 20:38:11] 2026-04-21 18:32:03,668 | INFO     | --------------------------------------------------
[2026-04-21 20:38:11] 2026-04-21 18:32:03,668 | INFO     | PanDA job id: 7098075652
[2026-04-21 20:38:11] 2026-04-21 18:32:03,668 | INFO     | task id: 49545114
[2026-04-21 20:38:11] 2026-04-21 18:32:03,668 | INFO     | errors: (none)
[2026-04-21 20:38:11] 2026-04-21 18:32:03,668 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-21 20:38:11] 2026-04-21 18:32:03,668 | INFO     | pilot state: finished 
[2026-04-21 20:38:11] 2026-04-21 18:32:03,668 | INFO     | transexitcode: 0
[2026-04-21 20:38:11] 2026-04-21 18:32:03,668 | INFO     | exeerrorcode: 0
[2026-04-21 20:38:11] 2026-04-21 18:32:03,668 | INFO     | exeerrordiag: 
[2026-04-21 20:38:11] 2026-04-21 18:32:03,668 | INFO     | exitcode: 0
[2026-04-21 20:38:11] 2026-04-21 18:32:03,668 | INFO     | exitmsg: OK
[2026-04-21 20:38:11] 2026-04-21 18:32:03,668 | INFO     | cpuconsumptiontime: 12548 s
[2026-04-21 20:38:11] 2026-04-21 18:32:03,668 | INFO     | nevents: 400
[2026-04-21 20:38:11] 2026-04-21 18:32:03,668 | INFO     | neventsw: 0
[2026-04-21 20:38:11] 2026-04-21 18:32:03,668 | INFO     | pid: 493301
[2026-04-21 20:38:11] 2026-04-21 18:32:03,668 | INFO     | pgrp: 493301
[2026-04-21 20:38:11] 2026-04-21 18:32:03,668 | INFO     | corecount: 12
[2026-04-21 20:38:11] 2026-04-21 18:32:03,669 | INFO     | event service: False
[2026-04-21 20:38:11] 2026-04-21 18:32:03,669 | INFO     | sizes: {0: 2276465, 10: 2276465, 1197: 2310100, 1199: 2310100, 1202: 2310294}
[2026-04-21 20:38:11] 2026-04-21 18:32:03,669 | INFO     | --------------------------------------------------
[2026-04-21 20:38:11] 2026-04-21 18:32:03,669 | INFO     | 
[2026-04-21 20:38:11] 2026-04-21 18:32:03,669 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot132/slots/1
[2026-04-21 20:38:11] 2026-04-21 18:32:03,687 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-21 20:38:11] 2026-04-21 18:32:03,688 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-21 20:38:11] 2026-04-21 18:32:03,688 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-21 20:38:11] 2026-04-21 18:32:03,688 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-21 20:38:11] 2026-04-21 18:32:03,688 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-21 20:38:11] 2026-04-21 18:32:03,688 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-21 20:38:11] 2026-04-21 18:32:03,688 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-21 20:38:11] 2026-04-21 18:32:03,688 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-21 20:38:11] 2026-04-21 18:32:03,688 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-21 20:38:11] 2026-04-21 18:32:03,688 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-21 20:38:11] 2026-04-21 18:32:03,688 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-21 20:38:11] 2026-04-21 18:32:03,688 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-21 20:38:11] 2026-04-21 18:32:03,688 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-21 20:38:11] 2026-04-21 18:32:03,688 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-21 20:38:11] 2026-04-21 18:32:03,688 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-21 20:38:11] 2026-04-21 18:32:03,688 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-21 20:38:11] 2026-04-21 18:32:03,688 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-21 20:38:11] 2026-04-21 18:32:03,688 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-21 20:38:11] 2026-04-21 18:32:03,688 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-21 20:38:11] 2026-04-21 18:32:03,689 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-21 20:38:11] 2026-04-21 18:32:03,689 | INFO     | job 7098075652 has completed (purged errors)
[2026-04-21 20:38:11] 2026-04-21 18:32:03,689 | INFO     | overall cleanup function is called
[2026-04-21 20:38:11] 2026-04-21 18:32:03,696 | WARNING  | process 493301 can no longer be monitored (due to stat problems) - aborting
[2026-04-21 20:38:11] 2026-04-21 18:32:03,869 | INFO     | using path: /var/lib/boinc/var/slot132/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-04-21 20:38:11] 2026-04-21 18:32:03,869 | INFO     | using path: /var/lib/boinc/var/slot132/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-04-21 20:38:11] 2026-04-21 18:32:03,869 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-04-21 20:38:11] 2026-04-21 18:32:03,869 | WARNING  | maxPSS not found in memory monitor output
[2026-04-21 20:38:11] 2026-04-21 18:32:03,870 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot132/slots/1/PanDA_Pilot-7098075652/payload.stdout) since it has not been created yet
[2026-04-21 20:38:11] 2026-04-21 18:32:03,870 | INFO     | executing command: df -mP /var/lib/boinc/var/slot132/slots/1
[2026-04-21 20:38:11] 2026-04-21 18:32:03,881 | INFO     | sufficient remaining disk space (272490299392 B)
[2026-04-21 20:38:11] 2026-04-21 18:32:03,881 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-04-21 20:38:11] 2026-04-21 18:32:03,881 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot132/slots/1/PanDA_Pilot-7098075652/HITS.49545114._030752.pool.root.1 since it does not exist
[2026-04-21 20:38:11] 2026-04-21 18:32:04,086 | INFO     | number of running child processes to parent process 493301: 1
[2026-04-21 20:38:11] 2026-04-21 18:32:04,086 | INFO     | maximum number of monitored processes: 6
[2026-04-21 20:38:11] 2026-04-21 18:32:04,086 | INFO     | aborting job monitoring since job object (job id=7098075652) has expired
[2026-04-21 20:38:11] 2026-04-21 18:32:04,696 | INFO     | --- collectZombieJob: --- 10, [493301]
[2026-04-21 20:38:11] 2026-04-21 18:32:04,697 | INFO     | zombie collector waiting for pid 493301
[2026-04-21 20:38:11] 2026-04-21 18:32:04,697 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-21 20:38:11] 2026-04-21 18:32:04,697 | INFO     | collected zombie processes
[2026-04-21 20:38:11] 2026-04-21 18:32:04,697 | INFO     | will attempt to kill all subprocesses of pid=493301
[2026-04-21 20:38:11] 2026-04-21 18:32:04,898 | INFO     | process IDs to be killed: [493301] (in reverse order)
[2026-04-21 20:38:11] 2026-04-21 18:32:05,004 | WARNING  | found no corresponding commands to process id(s)
[2026-04-21 20:38:11] 2026-04-21 18:32:05,004 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-21 20:38:11] 2026-04-21 18:32:05,023 | INFO     | did not find any defunct processes belonging to 493301
[2026-04-21 20:38:11] 2026-04-21 18:32:05,036 | INFO     | did not find any defunct processes belonging to 493301
[2026-04-21 20:38:11] 2026-04-21 18:32:05,037 | INFO     | Ready for new job
[2026-04-21 20:38:11] 2026-04-21 18:32:05,038 | INFO     | **************************************
[2026-04-21 20:38:11] 2026-04-21 18:32:05,038 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-21 20:38:11] 2026-04-21 18:32:05,038 | INFO     | **************************************
[2026-04-21 20:38:11] 2026-04-21 18:32:05,038 | INFO     | 
[2026-04-21 20:38:11] 2026-04-21 18:32:05,042 | INFO     | architecture information:
[2026-04-21 20:38:11] 2026-04-21 18:32:05,043 | INFO     | executing command: cat /etc/os-release
[2026-04-21 20:38:11] 2026-04-21 18:32:05,056 | INFO     | cat /etc/os-release:
[2026-04-21 20:38:11] NAME="CentOS Linux"
[2026-04-21 20:38:11] VERSION="7 (Core)"
[2026-04-21 20:38:11] ID="centos"
[2026-04-21 20:38:11] ID_LIKE="rhel fedora"
[2026-04-21 20:38:11] VERSION_ID="7"
[2026-04-21 20:38:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-21 20:38:11] ANSI_COLOR="0;31"
[2026-04-21 20:38:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-21 20:38:11] HOME_URL="https://www.centos.org/"
[2026-04-21 20:38:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-21 20:38:11] 
[2026-04-21 20:38:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-21 20:38:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-21 20:38:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-21 20:38:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-21 20:38:11] 
[2026-04-21 20:38:11] 2026-04-21 18:32:05,056 | INFO     | **************************************
[2026-04-21 20:38:11] 2026-04-21 18:32:05,559 | INFO     | executing command: df -mP /var/lib/boinc/var/slot132/slots/1
[2026-04-21 20:38:11] 2026-04-21 18:32:05,572 | INFO     | sufficient remaining disk space (272490299392 B)
[2026-04-21 20:38:11] 2026-04-21 18:32:05,572 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-21 20:38:11] 2026-04-21 18:32:05,573 | INFO     | current server update state: UPDATING_FINAL
[2026-04-21 20:38:11] 2026-04-21 18:32:05,573 | INFO     | update_server=False
[2026-04-21 20:38:11] 2026-04-21 18:32:05,573 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-21 20:38:11] 2026-04-21 18:32:05,573 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-21 20:38:11] 2026-04-21 18:32:05,573 | INFO     | aborting loop
[2026-04-21 20:38:11] 2026-04-21 18:32:05,775 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-21 20:38:11] 2026-04-21 18:32:05,793 | INFO     | all payload control threads have been joined
[2026-04-21 20:38:11] 2026-04-21 18:32:05,895 | INFO     | all job control threads have been joined
[2026-04-21 20:38:11] 2026-04-21 18:32:06,487 | INFO     | all data control threads have been joined
[2026-04-21 20:38:11] 2026-04-21 18:32:06,578 | INFO     | [job] retrieve thread has finished
[2026-04-21 20:38:11] 2026-04-21 18:32:06,579 | INFO     | [job] job monitor thread has finished
[2026-04-21 20:38:11] 2026-04-21 18:32:06,582 | INFO     | [payload] failed_post thread has finished
[2026-04-21 20:38:11] 2026-04-21 18:32:06,585 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-21 20:38:11] 2026-04-21 18:32:06,798 | INFO     | [payload] control thread has finished
[2026-04-21 20:38:11] 2026-04-21 18:32:06,901 | INFO     | [job] control thread has finished
[2026-04-21 20:38:11] 2026-04-21 18:32:07,098 | INFO     | [payload] validate_post thread has finished
[2026-04-21 20:38:11] 2026-04-21 18:32:07,492 | INFO     | [data] control thread has finished
[2026-04-21 20:38:11] 2026-04-21 18:32:07,679 | INFO     | [job] validate thread has finished
[2026-04-21 20:38:11] 2026-04-21 18:32:07,727 | INFO     | [job] create_data_payload thread has finished
[2026-04-21 20:38:11] 2026-04-21 18:32:07,796 | INFO     | [payload] validate_pre thread has finished
[2026-04-21 20:38:11] 2026-04-21 18:32:07,800 | INFO     | [payload] execute_payloads thread has finished
[2026-04-21 20:38:11] 2026-04-21 18:32:07,880 | INFO     | [data] copytool_in thread has finished
[2026-04-21 20:38:11] 2026-04-21 18:32:08,278 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-21 20:38:11] 2026-04-21 18:32:08,591 | INFO     | [data] copytool_out thread has finished
[2026-04-21 20:38:11] 2026-04-21 18:32:09,284 | INFO     | [job] queue monitor thread has finished
[2026-04-21 20:38:11] 2026-04-21 18:32:09,781 | INFO     | [data] queue_monitor thread has finished
[2026-04-21 20:38:11] 2026-04-21 18:32:16,358 | INFO     | job.realtimelogging is not enabled
[2026-04-21 20:38:11] 2026-04-21 18:32:17,364 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-21 20:38:11] 2026-04-21 18:32:35,119 | INFO     | PID=487517 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-21 20:38:11] 2026-04-21 18:32:35,119 | INFO     | .. there are 3 such processes running
[2026-04-21 20:38:11] 2026-04-21 18:32:35,120 | INFO     | found 0 job(s) in 20 queues
[2026-04-21 20:38:11] 2026-04-21 18:32:35,120 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-21 20:38:11] 2026-04-21 18:32:35,120 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-21 20:38:11] 2026-04-21 18:32:52,116 | INFO     | [monitor] cgroup control has ended
[2026-04-21 20:38:11] 2026-04-21 18:32:53,200 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23436381964096)>', '<ExcThread(monitor, started 23436142585600)>']
[2026-04-21 20:38:11] 2026-04-21 18:32:53,211 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-21 20:38:11] 2026-04-21 18:32:53,211 | INFO     | [monitor] control thread has ended
[2026-04-21 20:38:11] 2026-04-21 18:32:58,218 | INFO     | all workflow threads have been joined
[2026-04-21 20:38:11] 2026-04-21 18:32:58,218 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-21 20:38:11] 2026-04-21 18:32:58,219 | INFO     | traces error code: 0
[2026-04-21 20:38:11] 2026-04-21 18:32:58,219 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-21 20:38:11] 2026-04-21 18:32:58,291 [wrapper] ==== pilot stdout END ====
[2026-04-21 20:38:11] 2026-04-21 18:32:58,293 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-21 20:38:11] 2026-04-21 18:32:58,295 [wrapper] pilotpid: 487517
[2026-04-21 20:38:11] 2026-04-21 18:32:58,297 [wrapper] Pilot exit status: 0
[2026-04-21 20:38:11] 2026-04-21 18:32:58,302 [wrapper] pandaids: 7098075652
[2026-04-21 20:38:11] 2026-04-21 18:32:58,373 [wrapper] cleanup supervisor_pilot  528889 487518
[2026-04-21 20:38:11] 2026-04-21 18:32:58,375 [wrapper] Test setup, not cleaning
[2026-04-21 20:38:11] 2026-04-21 18:32:58,377 [wrapper] apfmon messages muted
[2026-04-21 20:38:11] 2026-04-21 18:32:58,378 [wrapper] ==== wrapper stdout END ====
[2026-04-21 20:38:11] 2026-04-21 18:32:58,380 [wrapper] ==== wrapper stderr END ====
[2026-04-21 20:38:11]  *** Error codes and diagnostics ***
[2026-04-21 20:38:11]     "exeErrorCode": 0,
[2026-04-21 20:38:11]     "pilotErrorCode": 0,
[2026-04-21 20:38:11]  *** Listing of results directory ***
[2026-04-21 20:38:11] total 460788
[2026-04-21 20:38:11] -rw-r--r--. 1 boinc boinc    644190 Apr 18 11:00 pilot3.tar.gz
[2026-04-21 20:38:11] -rwx------. 1 boinc boinc     36322 Apr 18 11:22 runpilot2-wrapper.sh
[2026-04-21 20:38:11] -rw-r--r--. 1 boinc boinc      5094 Apr 18 11:42 queuedata.json
[2026-04-21 20:38:11] -rw-r--r--. 1 boinc boinc       100 Apr 21 20:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-21 20:38:11] -rwxr-xr-x. 1 boinc boinc      7986 Apr 21 20:11 run_atlas
[2026-04-21 20:38:11] -rw-r--r--. 1 boinc boinc       105 Apr 21 20:11 job.xml
[2026-04-21 20:38:11] -rw-r--r--. 2 boinc boinc 281484478 Apr 21 20:11 EVNT.49539591._000486.pool.root.1
[2026-04-21 20:38:11] -rw-r--r--. 2 boinc boinc     15665 Apr 21 20:11 start_atlas.sh
[2026-04-21 20:38:11] drwxrwx--x. 2 boinc boinc      4096 Apr 21 20:11 shared
[2026-04-21 20:38:11] -rw-r--r--. 2 boinc boinc    656941 Apr 21 20:11 input.tar.gz
[2026-04-21 20:38:11] -rw-r--r--. 1 boinc boinc      6629 Apr 21 20:11 init_data.xml
[2026-04-21 20:38:11] -rw-r--r--. 1 boinc boinc         0 Apr 21 20:11 boinc_lockfile
[2026-04-21 20:38:11] -rw-r--r--. 1 boinc boinc      2606 Apr 21 20:11 pandaJob.out
[2026-04-21 20:38:11] -rw-------. 1 boinc boinc    994998 Apr 21 20:11 agis_schedconf.cvmfs.json
[2026-04-21 20:38:11] -rw-------. 1 boinc boinc   1509089 Apr 21 20:11 agis_ddmendpoints.agis.ALL.json
[2026-04-21 20:38:11] -rw-------. 1 boinc boinc       442 Apr 21 20:11 workernode_map.json
[2026-04-21 20:38:11] drwx------. 5 boinc boinc      4096 Apr 21 20:11 pilot3
[2026-04-21 20:38:11] -rw-------. 1 boinc boinc 185298179 Apr 21 20:31 HITS.49545114._030752.pool.root.1
[2026-04-21 20:38:11] -rw-r--r--. 1 boinc boinc       485 Apr 21 20:31 boinc_task_state.xml
[2026-04-21 20:38:11] -rw-------. 1 boinc boinc      1025 Apr 21 20:31 memory_monitor_summary.json
[2026-04-21 20:38:11] -rw-------. 1 boinc boinc    341771 Apr 21 20:31 log.49545114._030752.job.log.tgz.1
[2026-04-21 20:38:11] -rw-------. 1 boinc boinc      6378 Apr 21 20:32 heartbeat_new.json
[2026-04-21 20:38:11] -rw-------. 1 boinc boinc      6269 Apr 21 20:32 heartbeat.json
[2026-04-21 20:38:11] -rw-------. 1 boinc boinc        95 Apr 21 20:32 pilot_heartbeat.json
[2026-04-21 20:38:11] -rw-------. 1 boinc boinc      4900 Apr 21 20:32 pilotlog.txt
[2026-04-21 20:38:11] -rw-------. 1 boinc boinc    164135 Apr 21 20:32 log.49545114._030752.job.log.1
[2026-04-21 20:38:11] -rw-------. 1 boinc boinc       357 Apr 21 20:32 output.list
[2026-04-21 20:38:11] -rw-r--r--. 1 boinc boinc       410 Apr 21 20:32 runtime_log
[2026-04-21 20:38:11] -rw-------. 1 boinc boinc    522240 Apr 21 20:32 result.tar.gz
[2026-04-21 20:38:11] -rw-r--r--. 1 boinc boinc      8845 Apr 21 20:32 runtime_log.err
[2026-04-21 20:38:11] -rw-------. 1 boinc boinc       658 Apr 21 20:32 4d3ef126042c.diag
[2026-04-21 20:38:11] -rw-r--r--. 1 boinc boinc        25 Apr 21 20:38 wrapper_checkpoint.txt
[2026-04-21 20:38:11] -rw-r--r--. 1 boinc boinc      8192 Apr 21 20:38 boinc_mmap_file
[2026-04-21 20:38:11] -rw-r--r--. 1 boinc boinc     22090 Apr 21 20:38 stderr.txt
[2026-04-21 20:38:11] HITS file was successfully produced:
[2026-04-21 20:38:11] -rw-------. 1 boinc boinc 185298179 Apr 21 20:31 shared/HITS.pool.root.1
[2026-04-21 20:38:11]  *** Contents of shared directory: ***
[2026-04-21 20:38:11] total 457024
[2026-04-21 20:38:11] -rw-r--r--. 2 boinc boinc 281484478 Apr 21 20:11 ATLAS.root_0
[2026-04-21 20:38:11] -rw-r--r--. 2 boinc boinc     15665 Apr 21 20:11 start_atlas.sh
[2026-04-21 20:38:11] -rw-r--r--. 2 boinc boinc    656941 Apr 21 20:11 input.tar.gz
[2026-04-21 20:38:11] -rw-------. 1 boinc boinc 185298179 Apr 21 20:31 HITS.pool.root.1
[2026-04-21 20:38:11] -rw-------. 1 boinc boinc    522240 Apr 21 20:32 result.tar.gz
20:38:12 (482646): run_atlas exited; CPU time 12570.643734
20:38:12 (482646): called boinc_finish(0)

</stderr_txt>
]]>

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