Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:46:52 (31643): wrapper (7.7.26015): starting
08:46:52 (31643): wrapper: running run_atlas (--nthreads 12)
[2026-04-21 08:46:52] Arguments: --nthreads 12
[2026-04-21 08:46:52] Threads: 12
[2026-04-21 08:46:52] Checking for CVMFS
[2026-04-21 08:46:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-21 08:46:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-21 08:46:52] Running cvmfs_config stat atlas.cern.ch
[2026-04-21 08:46:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-21 08:46:52] 2.11.2.0 2922 7098 82064 158690 0 1 14164381 20275200 1 130560 0 1066789 99.549 475283 16209 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-04-21 08:46:52] CVMFS is ok
[2026-04-21 08:46:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-21 08:46:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-21 08:46:52] Further information can be found at the LHC@home message board.
[2026-04-21 08:46:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-21 08:46:52] Checking for apptainer binary...
[2026-04-21 08:46:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-21 08:46:52] Running /usr/bin/apptainer --version
[2026-04-21 08:46:52] apptainer version 1.3.2-1.el7
[2026-04-21 08:46:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-21 08:46:54] c-205-15.aglt2.org
[2026-04-21 08:46:54] apptainer works
[2026-04-21 08:46:54] Set ATHENA_PROC_NUMBER=12
[2026-04-21 08:46:54] Set ATHENA_CORE_NUMBER=12
[2026-04-21 08:46:54] Starting ATLAS job with PandaID=7105313193
[2026-04-21 08:46:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:10:48 (18169): wrapper (7.7.26015): starting
09:10:48 (18169): wrapper: running run_atlas (--nthreads 12)
[2026-04-21 09:10:48] Arguments: --nthreads 12
[2026-04-21 09:10:48] Threads: 12
[2026-04-21 09:10:48] This job has been restarted, cleaning up previous attempt
[2026-04-21 09:10:48] Checking for CVMFS
[2026-04-21 09:10:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-21 09:10:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-21 09:10:48] Running cvmfs_config stat atlas.cern.ch
[2026-04-21 09:10:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-21 09:10:48] 2.11.2.0 2922 7122 84508 158690 0 188 14213660 20275200 1 130560 0 1131984 99.574 475724 16209 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-04-21 09:10:48] CVMFS is ok
[2026-04-21 09:10:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-21 09:10:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-21 09:10:48] Further information can be found at the LHC@home message board.
[2026-04-21 09:10:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-21 09:10:48] Checking for apptainer binary...
[2026-04-21 09:10:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-21 09:10:48] Running /usr/bin/apptainer --version
[2026-04-21 09:10:48] apptainer version 1.3.2-1.el7
[2026-04-21 09:10:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-21 09:10:50] c-205-15.aglt2.org
[2026-04-21 09:10:50] apptainer works
[2026-04-21 09:10:50] Set ATHENA_PROC_NUMBER=12
[2026-04-21 09:10:50] Set ATHENA_CORE_NUMBER=12
[2026-04-21 09:10:50] Starting ATLAS job with PandaID=7105313193
[2026-04-21 09:10:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-21 11:10:24]  *** The last 200 lines of the pilot log: ***
[2026-04-21 11:10:24] 2026-04-21 15:09:47,939 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-04-21 11:10:24] 2026-04-21 15:09:47,939 | INFO     | this job has now completed (state=finished)
[2026-04-21 11:10:24] 2026-04-21 15:09:47,939 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-21 11:10:24] 2026-04-21 15:09:47,939 | INFO     | log transfer has been attempted: DONE
[2026-04-21 11:10:24] 2026-04-21 15:09:47,939 | INFO     | job 7105313193 has finished - writing final server update
[2026-04-21 11:10:24] 2026-04-21 15:09:47,940 | INFO     | total number of processed events: 400 (read)
[2026-04-21 11:10:24] 2026-04-21 15:09:47,942 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7105313193/memory_monitor_summary.json (trf name=prmon)
[2026-04-21 11:10:24] 2026-04-21 15:09:47,942 | INFO     | extracted standard info from prmon json
[2026-04-21 11:10:24] 2026-04-21 15:09:47,943 | INFO     | extracted standard memory fields from prmon json
[2026-04-21 11:10:24] 2026-04-21 15:09:47,943 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-21 11:10:24] 2026-04-21 15:09:47,943 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-21 11:10:24] 2026-04-21 15:09:47,945 | INFO     | fitting pss+swap vs Time
[2026-04-21 11:10:24] 2026-04-21 15:09:47,946 | INFO     | sum of square deviations: 496597218.0
[2026-04-21 11:10:24] 2026-04-21 15:09:47,946 | INFO     | sum of deviations: 16578170324.000002
[2026-04-21 11:10:24] 2026-04-21 15:09:47,946 | INFO     | mean x (centered): 0.0
[2026-04-21 11:10:24] 2026-04-21 15:09:47,946 | INFO     | mean y: 2714372.094017094
[2026-04-21 11:10:24] 2026-04-21 15:09:47,946 | INFO     | intersect: 2714372.094017094
[2026-04-21 11:10:24] 2026-04-21 15:09:47,947 | INFO     | chi2: 2.4370001084493005
[2026-04-21 11:10:24] 2026-04-21 15:09:47,947 | INFO     | sum of square deviations: 435610028.0
[2026-04-21 11:10:24] 2026-04-21 15:09:47,947 | INFO     | sum of deviations: 24314564406.499996
[2026-04-21 11:10:24] 2026-04-21 15:09:47,948 | INFO     | mean x (centered): 0.0
[2026-04-21 11:10:24] 2026-04-21 15:09:47,948 | INFO     | mean y: 2732969.7589285714
[2026-04-21 11:10:24] 2026-04-21 15:09:47,948 | INFO     | intersect: 2732969.7589285714
[2026-04-21 11:10:24] 2026-04-21 15:09:47,948 | INFO     | chi2: 1.6530852446705053
[2026-04-21 11:10:24] 2026-04-21 15:09:47,948 | INFO     | current chi2=1.6530852446705053 (change=32.16720676625705 %)
[2026-04-21 11:10:24] 2026-04-21 15:09:47,948 | INFO     | sum of square deviations: 379832238.0
[2026-04-21 11:10:24] 2026-04-21 15:09:47,949 | INFO     | sum of deviations: 23296207744.999992
[2026-04-21 11:10:24] 2026-04-21 15:09:47,949 | INFO     | mean x (centered): 0.0
[2026-04-21 11:10:24] 2026-04-21 15:09:47,949 | INFO     | mean y: 2730183.8224299066
[2026-04-21 11:10:24] 2026-04-21 15:09:47,949 | INFO     | intersect: 2730183.8224299066
[2026-04-21 11:10:24] 2026-04-21 15:09:47,949 | INFO     | chi2: 1.6524320621666744
[2026-04-21 11:10:24] 2026-04-21 15:09:47,950 | INFO     | current chi2=1.6524320621666744 (change=0.03951293533934751 %)
[2026-04-21 11:10:24] 2026-04-21 15:09:47,950 | INFO     | right removable region: 106
[2026-04-21 11:10:24] 2026-04-21 15:09:47,950 | INFO     | sum of square deviations: 435610028.0
[2026-04-21 11:10:24] 2026-04-21 15:09:47,950 | INFO     | sum of deviations: -4941520391.0
[2026-04-21 11:10:24] 2026-04-21 15:09:47,951 | INFO     | mean x (centered): 0.0
[2026-04-21 11:10:24] 2026-04-21 15:09:47,951 | INFO     | mean y: 2767391.125
[2026-04-21 11:10:24] 2026-04-21 15:09:47,951 | INFO     | intersect: 2767391.125
[2026-04-21 11:10:24] 2026-04-21 15:09:47,951 | INFO     | chi2: 0.9277309624218324
[2026-04-21 11:10:24] 2026-04-21 15:09:47,951 | INFO     | current chi2=0.9277309624218324 (change=61.931435324713156 %)
[2026-04-21 11:10:24] 2026-04-21 15:09:47,951 | INFO     | sum of square deviations: 379832238.0
[2026-04-21 11:10:24] 2026-04-21 15:09:47,952 | INFO     | sum of deviations: -9957933898.000002
[2026-04-21 11:10:24] 2026-04-21 15:09:47,952 | INFO     | mean x (centered): 0.0
[2026-04-21 11:10:24] 2026-04-21 15:09:47,952 | INFO     | mean y: 2780828.691588785
[2026-04-21 11:10:24] 2026-04-21 15:09:47,952 | INFO     | intersect: 2780828.691588785
[2026-04-21 11:10:24] 2026-04-21 15:09:47,952 | INFO     | chi2: 0.8182799132270252
[2026-04-21 11:10:24] 2026-04-21 15:09:47,952 | INFO     | current chi2=0.8182799132270252 (change=11.797714383606033 %)
[2026-04-21 11:10:24] 2026-04-21 15:09:47,953 | INFO     | left removable region: 10
[2026-04-21 11:10:24] 2026-04-21 15:09:47,953 | INFO     | sum of square deviations: 274312120.0
[2026-04-21 11:10:24] 2026-04-21 15:09:47,953 | INFO     | sum of deviations: -1550126754.0
[2026-04-21 11:10:24] 2026-04-21 15:09:47,953 | INFO     | mean x (centered): 0.0
[2026-04-21 11:10:24] 2026-04-21 15:09:47,953 | INFO     | mean y: 2805251.875
[2026-04-21 11:10:24] 2026-04-21 15:09:47,954 | INFO     | intersect: 2805251.875
[2026-04-21 11:10:24] 2026-04-21 15:09:47,954 | INFO     | chi2: 0.0048421924353058785
[2026-04-21 11:10:24] 2026-04-21 15:09:47,954 | INFO     | current memory leak: -5.65 B/s (using 96 data points, chi2=0.00)
[2026-04-21 11:10:24] 2026-04-21 15:09:47,954 | INFO     | could have reported an average CPU frequency of 1684 MHz (7 samples)
[2026-04-21 11:10:24] 2026-04-21 15:09:47,954 | INFO     | ..............................
[2026-04-21 11:10:24] 2026-04-21 15:09:47,955 | INFO     | . Timing measurements:
[2026-04-21 11:10:24] 2026-04-21 15:09:47,955 | INFO     | . get job = 0 s
[2026-04-21 11:10:24] 2026-04-21 15:09:47,955 | INFO     | . initial setup = 1 s
[2026-04-21 11:10:24] 2026-04-21 15:09:47,955 | INFO     | . payload setup = 14 s
[2026-04-21 11:10:24] 2026-04-21 15:09:47,955 | INFO     | . stage-in = 0 s
[2026-04-21 11:10:24] 2026-04-21 15:09:47,955 | INFO     | . payload execution = 7085 s
[2026-04-21 11:10:24] 2026-04-21 15:09:47,955 | INFO     | . stage-out = 0 s
[2026-04-21 11:10:24] 2026-04-21 15:09:47,955 | INFO     | . log creation = 0 s
[2026-04-21 11:10:24] 2026-04-21 15:09:47,955 | INFO     | ..............................
[2026-04-21 11:10:24] 2026-04-21 15:09:48,036 | INFO     | 
[2026-04-21 11:10:24] 2026-04-21 15:09:48,036 | INFO     | job summary report
[2026-04-21 11:10:24] 2026-04-21 15:09:48,036 | INFO     | --------------------------------------------------
[2026-04-21 11:10:24] 2026-04-21 15:09:48,037 | INFO     | PanDA job id: 7105313193
[2026-04-21 11:10:24] 2026-04-21 15:09:48,037 | INFO     | task id: 49820244
[2026-04-21 11:10:24] 2026-04-21 15:09:48,037 | INFO     | errors: (none)
[2026-04-21 11:10:24] 2026-04-21 15:09:48,037 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-21 11:10:24] 2026-04-21 15:09:48,037 | INFO     | pilot state: finished 
[2026-04-21 11:10:24] 2026-04-21 15:09:48,037 | INFO     | transexitcode: 0
[2026-04-21 11:10:24] 2026-04-21 15:09:48,038 | INFO     | exeerrorcode: 0
[2026-04-21 11:10:24] 2026-04-21 15:09:48,038 | INFO     | exeerrordiag: 
[2026-04-21 11:10:24] 2026-04-21 15:09:48,038 | INFO     | exitcode: 0
[2026-04-21 11:10:24] 2026-04-21 15:09:48,038 | INFO     | exitmsg: OK
[2026-04-21 11:10:24] 2026-04-21 15:09:48,038 | INFO     | cpuconsumptiontime: 78346 s
[2026-04-21 11:10:24] 2026-04-21 15:09:48,038 | INFO     | nevents: 400
[2026-04-21 11:10:24] 2026-04-21 15:09:48,038 | INFO     | neventsw: 0
[2026-04-21 11:10:24] 2026-04-21 15:09:48,038 | INFO     | pid: 24322
[2026-04-21 11:10:24] 2026-04-21 15:09:48,038 | INFO     | pgrp: 24322
[2026-04-21 11:10:24] 2026-04-21 15:09:48,039 | INFO     | corecount: 12
[2026-04-21 11:10:24] 2026-04-21 15:09:48,039 | INFO     | event service: False
[2026-04-21 11:10:24] 2026-04-21 15:09:48,039 | INFO     | sizes: {0: 2281554, 1: 2283383, 11: 2283383, 7104: 2310702, 7105: 2310701, 7106: 2319755, 7109: 2319939, 7111: 2320133}
[2026-04-21 11:10:24] 2026-04-21 15:09:48,039 | INFO     | --------------------------------------------------
[2026-04-21 11:10:24] 2026-04-21 15:09:48,039 | INFO     | 
[2026-04-21 11:10:24] 2026-04-21 15:09:48,039 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-04-21 11:10:24] 2026-04-21 15:09:48,063 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-21 11:10:24] 2026-04-21 15:09:48,064 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-21 11:10:24] 2026-04-21 15:09:48,064 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-21 11:10:24] 2026-04-21 15:09:48,064 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-21 11:10:24] 2026-04-21 15:09:48,064 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-21 11:10:24] 2026-04-21 15:09:48,064 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-21 11:10:24] 2026-04-21 15:09:48,065 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-21 11:10:24] 2026-04-21 15:09:48,065 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-21 11:10:24] 2026-04-21 15:09:48,065 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-21 11:10:24] 2026-04-21 15:09:48,065 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-21 11:10:24] 2026-04-21 15:09:48,065 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-21 11:10:24] 2026-04-21 15:09:48,065 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-21 11:10:24] 2026-04-21 15:09:48,066 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-21 11:10:24] 2026-04-21 15:09:48,066 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-21 11:10:24] 2026-04-21 15:09:48,066 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-21 11:10:24] 2026-04-21 15:09:48,066 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-21 11:10:24] 2026-04-21 15:09:48,066 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-21 11:10:24] 2026-04-21 15:09:48,067 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-21 11:10:24] 2026-04-21 15:09:48,067 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-21 11:10:24] 2026-04-21 15:09:48,067 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-21 11:10:24] 2026-04-21 15:09:48,067 | INFO     | job 7105313193 has completed (purged errors)
[2026-04-21 11:10:24] 2026-04-21 15:09:48,067 | INFO     | overall cleanup function is called
[2026-04-21 11:10:24] 2026-04-21 15:09:49,075 | INFO     | --- collectZombieJob: --- 10, [24322]
[2026-04-21 11:10:24] 2026-04-21 15:09:49,075 | INFO     | zombie collector waiting for pid 24322
[2026-04-21 11:10:24] 2026-04-21 15:09:49,076 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-21 11:10:24] 2026-04-21 15:09:49,076 | INFO     | collected zombie processes
[2026-04-21 11:10:24] 2026-04-21 15:09:49,076 | INFO     | will attempt to kill all subprocesses of pid=24322
[2026-04-21 11:10:24] 2026-04-21 15:09:49,169 | INFO     | process IDs to be killed: [24322] (in reverse order)
[2026-04-21 11:10:24] 2026-04-21 15:09:49,223 | WARNING  | found no corresponding commands to process id(s)
[2026-04-21 11:10:24] 2026-04-21 15:09:49,223 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-21 11:10:24] 2026-04-21 15:09:49,226 | INFO     | did not find any defunct processes belonging to 24322
[2026-04-21 11:10:24] 2026-04-21 15:09:49,229 | INFO     | did not find any defunct processes belonging to 24322
[2026-04-21 11:10:24] 2026-04-21 15:09:49,229 | INFO     | Ready for new job
[2026-04-21 11:10:24] 2026-04-21 15:09:49,230 | INFO     | **************************************
[2026-04-21 11:10:24] 2026-04-21 15:09:49,230 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-21 11:10:24] 2026-04-21 15:09:49,231 | INFO     | **************************************
[2026-04-21 11:10:24] 2026-04-21 15:09:49,231 | INFO     | 
[2026-04-21 11:10:24] 2026-04-21 15:09:49,231 | INFO     | architecture information:
[2026-04-21 11:10:24] 2026-04-21 15:09:49,232 | INFO     | executing command: cat /etc/os-release
[2026-04-21 11:10:24] 2026-04-21 15:09:49,247 | INFO     | cat /etc/os-release:
[2026-04-21 11:10:24] NAME="CentOS Linux"
[2026-04-21 11:10:24] VERSION="7 (Core)"
[2026-04-21 11:10:24] ID="centos"
[2026-04-21 11:10:24] ID_LIKE="rhel fedora"
[2026-04-21 11:10:24] VERSION_ID="7"
[2026-04-21 11:10:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-21 11:10:24] ANSI_COLOR="0;31"
[2026-04-21 11:10:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-21 11:10:24] HOME_URL="https://www.centos.org/"
[2026-04-21 11:10:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-21 11:10:24] 
[2026-04-21 11:10:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-21 11:10:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-21 11:10:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-21 11:10:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-21 11:10:24] 
[2026-04-21 11:10:24] 2026-04-21 15:09:49,247 | INFO     | **************************************
[2026-04-21 11:10:24] 2026-04-21 15:09:49,750 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-04-21 11:10:24] 2026-04-21 15:09:49,767 | INFO     | sufficient remaining disk space (25211961344 B)
[2026-04-21 11:10:24] 2026-04-21 15:09:49,767 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-21 11:10:24] 2026-04-21 15:09:49,767 | INFO     | current server update state: UPDATING_FINAL
[2026-04-21 11:10:24] 2026-04-21 15:09:49,767 | INFO     | update_server=False
[2026-04-21 11:10:24] 2026-04-21 15:09:49,767 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-21 11:10:24] 2026-04-21 15:09:49,768 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-04-21 11:10:24] 2026-04-21 15:09:49,768 | INFO     | found 0 job(s) in 20 queues
[2026-04-21 11:10:24] 2026-04-21 15:09:49,768 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-21 11:10:24] 2026-04-21 15:09:49,769 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-21 11:10:24] 2026-04-21 15:09:49,769 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-21 11:10:24] 2026-04-21 15:09:49,821 | INFO     | all data control threads have been joined
[2026-04-21 11:10:24] 2026-04-21 15:09:50,592 | INFO     | all job control threads have been joined
[2026-04-21 11:10:24] 2026-04-21 15:09:50,736 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-21 11:10:24] 2026-04-21 15:09:50,736 | INFO     | aborting loop
[2026-04-21 11:10:24] 2026-04-21 15:09:50,773 | INFO     | [job] retrieve thread has finished
[2026-04-21 11:10:24] 2026-04-21 15:09:50,774 | INFO     | [job] queue monitor thread has finished
[2026-04-21 11:10:24] 2026-04-21 15:09:50,803 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-21 11:10:24] 2026-04-21 15:09:50,827 | INFO     | [data] control thread has finished
[2026-04-21 11:10:24] 2026-04-21 15:09:50,871 | INFO     | [payload] validate_post thread has finished
[2026-04-21 11:10:24] 2026-04-21 15:09:50,874 | INFO     | [data] copytool_in thread has finished
[2026-04-21 11:10:24] 2026-04-21 15:09:50,987 | INFO     | all payload control threads have been joined
[2026-04-21 11:10:24] 2026-04-21 15:09:51,218 | INFO     | [payload] execute_payloads thread has finished
[2026-04-21 11:10:24] 2026-04-21 15:09:51,472 | INFO     | [job] create_data_payload thread has finished
[2026-04-21 11:10:24] 2026-04-21 15:09:51,482 | INFO     | [job] validate thread has finished
[2026-04-21 11:10:24] 2026-04-21 15:09:51,523 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-21 11:10:24] 2026-04-21 15:09:51,598 | INFO     | [job] control thread has finished
[2026-04-21 11:10:24] 2026-04-21 15:09:51,605 | INFO     | [payload] validate_pre thread has finished
[2026-04-21 11:10:24] 2026-04-21 15:09:51,741 | INFO     | [job] job monitor thread has finished
[2026-04-21 11:10:24] 2026-04-21 15:09:51,992 | INFO     | [payload] control thread has finished
[2026-04-21 11:10:24] 2026-04-21 15:09:52,015 | INFO     | [payload] failed_post thread has finished
[2026-04-21 11:10:24] 2026-04-21 15:09:52,809 | INFO     | [data] copytool_out thread has finished
[2026-04-21 11:10:24] 2026-04-21 15:09:55,529 | INFO     | [data] queue_monitor thread has finished
[2026-04-21 11:10:24] 2026-04-21 15:09:59,813 | INFO     | job.realtimelogging is not enabled
[2026-04-21 11:10:24] 2026-04-21 15:10:00,819 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-21 11:10:24] 2026-04-21 15:10:16,986 | INFO     | [monitor] cgroup control has ended
[2026-04-21 11:10:24] 2026-04-21 15:10:18,936 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139932988077888)>', '<ExcThread(monitor, started 139932165199616)>']
[2026-04-21 11:10:24] 2026-04-21 15:10:19,922 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-21 11:10:24] 2026-04-21 15:10:19,922 | INFO     | [monitor] control thread has ended
[2026-04-21 11:10:24] 2026-04-21 15:10:23,961 | INFO     | all workflow threads have been joined
[2026-04-21 11:10:24] 2026-04-21 15:10:23,961 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-21 11:10:24] 2026-04-21 15:10:23,962 | INFO     | traces error code: 0
[2026-04-21 11:10:24] 2026-04-21 15:10:23,962 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-21 11:10:24] 2026-04-21 15:10:24,049 [wrapper] ==== pilot stdout END ====
[2026-04-21 11:10:24] 2026-04-21 15:10:24,053 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-21 11:10:24] 2026-04-21 15:10:24,057 [wrapper] pilotpid: 21909
[2026-04-21 11:10:24] 2026-04-21 15:10:24,060 [wrapper] Pilot exit status: 0
[2026-04-21 11:10:24] 2026-04-21 15:10:24,076 [wrapper] pandaids: 7105313193 7105313193
[2026-04-21 11:10:24] 2026-04-21 15:10:24,120 [wrapper] cleanup supervisor_pilot 24107 21910
[2026-04-21 11:10:24] 2026-04-21 15:10:24,124 [wrapper] Test setup, not cleaning
[2026-04-21 11:10:24] 2026-04-21 15:10:24,127 [wrapper] apfmon messages muted
[2026-04-21 11:10:24] 2026-04-21 15:10:24,131 [wrapper] ==== wrapper stdout END ====
[2026-04-21 11:10:24] 2026-04-21 15:10:24,135 [wrapper] ==== wrapper stderr END ====
[2026-04-21 11:10:24]  *** Error codes and diagnostics ***
[2026-04-21 11:10:24]     "exeErrorCode": 0,
[2026-04-21 11:10:24]     "pilotErrorCode": 0,
[2026-04-21 11:10:24]  *** Listing of results directory ***
[2026-04-21 11:10:24] total 4643124
[2026-04-21 11:10:24] drwx------ 5 boincer umatlas       4096 Apr  1 08:07 pilot3
[2026-04-21 11:10:24] -rw-r--r-- 1 boincer umatlas     644190 Apr 21 06:54 pilot3.tar.gz
[2026-04-21 11:10:24] -rwx------ 1 boincer umatlas      36322 Apr 21 07:04 runpilot2-wrapper.sh
[2026-04-21 11:10:24] -rw-r--r-- 1 boincer umatlas       5094 Apr 21 07:05 queuedata.json
[2026-04-21 11:10:24] -rw-r--r-- 1 boincer umatlas        100 Apr 21 08:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-21 11:10:24] -rwxr-xr-x 1 boincer umatlas       7986 Apr 21 08:46 run_atlas
[2026-04-21 11:10:24] -rw-r--r-- 1 boincer umatlas        105 Apr 21 08:46 job.xml
[2026-04-21 11:10:24] -rw-r--r-- 3 boincer umatlas 2236782835 Apr 21 08:46 EVNT.49820242._000039.pool.root.1
[2026-04-21 11:10:24] -rw-r--r-- 3 boincer umatlas 2236782835 Apr 21 08:46 ATLAS.root_0
[2026-04-21 11:10:24] -rw-r--r-- 2 boincer umatlas      15665 Apr 21 08:46 start_atlas.sh
[2026-04-21 11:10:24] drwxrwx--x 2 boincer umatlas       4096 Apr 21 08:46 shared
[2026-04-21 11:10:24] -rw-r--r-- 2 boincer umatlas     656921 Apr 21 08:46 input.tar.gz
[2026-04-21 11:10:24] -rw-r--r-- 1 boincer umatlas          0 Apr 21 08:46 boinc_lockfile
[2026-04-21 11:10:24] -rw------- 1 boincer umatlas    1512404 Apr 21 08:47 agis_ddmendpoints.agis.ALL.json
[2026-04-21 11:10:24] -rw-r--r-- 1 boincer umatlas       2550 Apr 21 09:10 pandaJob.out
[2026-04-21 11:10:24] -rw------- 1 boincer umatlas         57 Apr 21 09:10 setup.sh.local
[2026-04-21 11:10:24] -rw------- 1 boincer umatlas     993801 Apr 21 09:11 agis_schedconf.cvmfs.json
[2026-04-21 11:10:24] -rw------- 1 boincer umatlas        434 Apr 21 09:11 workernode_map.json
[2026-04-21 11:10:24] -rw-r--r-- 1 boincer umatlas       5869 Apr 21 11:04 init_data.xml
[2026-04-21 11:10:24] -rw------- 1 boincer umatlas  274848064 Apr 21 11:09 HITS.49820244._014052.pool.root.1
[2026-04-21 11:10:24] -rw-r--r-- 1 boincer umatlas        488 Apr 21 11:09 boinc_task_state.xml
[2026-04-21 11:10:24] -rw------- 1 boincer umatlas       1058 Apr 21 11:09 memory_monitor_summary.json
[2026-04-21 11:10:24] -rw------- 1 boincer umatlas         96 Apr 21 11:09 pilot_heartbeat.json
[2026-04-21 11:10:24] -rw------- 1 boincer umatlas     375361 Apr 21 11:09 log.49820244._014052.job.log.tgz.1
[2026-04-21 11:10:24] -rw------- 1 boincer umatlas       6424 Apr 21 11:09 heartbeat_new.json
[2026-04-21 11:10:24] -rw------- 1 boincer umatlas       6315 Apr 21 11:09 heartbeat.json
[2026-04-21 11:10:24] -rw-r--r-- 1 boincer umatlas         27 Apr 21 11:10 wrapper_checkpoint.txt
[2026-04-21 11:10:24] -rw-r--r-- 1 boincer umatlas       8192 Apr 21 11:10 boinc_mmap_file
[2026-04-21 11:10:24] -rw------- 1 boincer umatlas       4619 Apr 21 11:10 pilotlog.txt
[2026-04-21 11:10:24] -rw------- 1 boincer umatlas     664087 Apr 21 11:10 log.49820244._014052.job.log.1
[2026-04-21 11:10:24] -rw------- 1 boincer umatlas        357 Apr 21 11:10 output.list
[2026-04-21 11:10:24] -rw-r--r-- 1 boincer umatlas        410 Apr 21 11:10 runtime_log
[2026-04-21 11:10:24] -rw------- 1 boincer umatlas    1054720 Apr 21 11:10 result.tar.gz
[2026-04-21 11:10:24] -rw-r--r-- 1 boincer umatlas       9050 Apr 21 11:10 runtime_log.err
[2026-04-21 11:10:24] -rw------- 1 boincer umatlas        785 Apr 21 11:10 59befb09bf3c.diag
[2026-04-21 11:10:24] -rw-r--r-- 1 boincer umatlas      23026 Apr 21 11:10 stderr.txt
[2026-04-21 11:10:24] HITS file was successfully produced:
[2026-04-21 11:10:24] -rw------- 1 boincer umatlas 274848064 Apr 21 11:09 shared/HITS.pool.root.1
[2026-04-21 11:10:24]  *** Contents of shared directory: ***
[2026-04-21 11:10:24] total 2454468
[2026-04-21 11:10:24] -rw-r--r-- 3 boincer umatlas 2236782835 Apr 21 08:46 ATLAS.root_0
[2026-04-21 11:10:24] -rw-r--r-- 2 boincer umatlas      15665 Apr 21 08:46 start_atlas.sh
[2026-04-21 11:10:24] -rw-r--r-- 2 boincer umatlas     656921 Apr 21 08:46 input.tar.gz
[2026-04-21 11:10:24] -rw------- 1 boincer umatlas  274848064 Apr 21 11:09 HITS.pool.root.1
[2026-04-21 11:10:24] -rw------- 1 boincer umatlas    1054720 Apr 21 11:10 result.tar.gz
11:10:25 (18169): run_atlas exited; CPU time 78377.259970
11:10:25 (18169): called boinc_finish(0)

</stderr_txt>
]]>

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