Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:08:56 (4044069): wrapper (7.7.26015): starting
15:08:56 (4044069): wrapper: running run_atlas (--nthreads 12)
[2026-04-21 15:08:56] Arguments: --nthreads 12
[2026-04-21 15:08:56] Threads: 12
[2026-04-21 15:08:56] Checking for CVMFS
[2026-04-21 15:08:56] No cvmfs_config command found, will try listing directly
[2026-04-21 15:08:56] CVMFS is ok
[2026-04-21 15:08:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-21 15:08:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-21 15:08:56] Further information can be found at the LHC@home message board.
[2026-04-21 15:08:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-21 15:08:56] Checking for apptainer binary...
[2026-04-21 15:08:56] which: no apptainer in ((null))
[2026-04-21 15:08:56] apptainer is not installed, using version from CVMFS
[2026-04-21 15:08:56] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-21 15:08:56] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot228/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut29.grid.cesnet.cz
[2026-04-21 15:08:56] apptainer works
[2026-04-21 15:08:56] Set ATHENA_PROC_NUMBER=12
[2026-04-21 15:08:56] Set ATHENA_CORE_NUMBER=12
[2026-04-21 15:08:56] Starting ATLAS job with PandaID=7105079623
[2026-04-21 15:08:56] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot228/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-21 15:44:30]  *** The last 200 lines of the pilot log: ***
[2026-04-21 15:44:30]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-21 15:44:30]  replicas=None
[2026-04-21 15:44:30]  scope=mc23_13p6TeV
[2026-04-21 15:44:30]  status=None
[2026-04-21 15:44:30]  status_code=0
[2026-04-21 15:44:30]  storage_token=
[2026-04-21 15:44:30]  surl=/var/lib/boinc/var/slot228/slots/1/PanDA_Pilot-7105079623/log.49820244._013065.job.log.tgz.1
[2026-04-21 15:44:30]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/38/8a/log.49820244._013065.job.log.tgz.1
[2026-04-21 15:44:30]  workdir=None
[2026-04-21 15:44:30] ]
[2026-04-21 15:44:30] 2026-04-21 13:43:54,082 | INFO     | transferring file log.49820244._013065.job.log.tgz.1 from /var/lib/boinc/var/slot228/slots/1/PanDA_Pilot-7105079623/log.49820244._013065.job.log.tgz.1 to /var/lib/
[2026-04-21 15:44:30] 2026-04-21 13:43:54,082 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot228/slots/1/PanDA_Pilot-7105079623/log.49820244._013065.job.log.tgz.1 /var/lib/boinc/var/slot228/slots/1/
[2026-04-21 15:44:30] 2026-04-21 13:43:54,094 | INFO     | adding to output.list: log.49820244._013065.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/38/8a/log.49820244._013065.job.log.tg
[2026-04-21 15:44:30] 2026-04-21 13:43:54,094 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-21 15:44:30] 2026-04-21 13:43:54,094 | INFO     | summary of transferred files:
[2026-04-21 15:44:30] 2026-04-21 13:43:54,094 | INFO     |  -- lfn=log.49820244._013065.job.log.tgz.1, status_code=0, status=transferred
[2026-04-21 15:44:30] 2026-04-21 13:43:54,094 | INFO     | stage-out finished correctly
[2026-04-21 15:44:30] 2026-04-21 13:43:56,206 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-21 15:44:30] 2026-04-21 13:43:57,743 | INFO     | job 7105079623 has state=finished
[2026-04-21 15:44:30] 2026-04-21 13:43:57,744 | INFO     | preparing for final server update for job 7105079623 in state='finished'
[2026-04-21 15:44:30] 2026-04-21 13:43:57,744 | INFO     | reading metadata from: /var/lib/boinc/var/slot228/slots/1/PanDA_Pilot-7105079623/jobReport.json
[2026-04-21 15:44:30] 2026-04-21 13:43:57,745 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot228/slots/1/workernode_map.json
[2026-04-21 15:44:30] 2026-04-21 13:43:57,745 | INFO     | this job has now completed (state=finished)
[2026-04-21 15:44:30] 2026-04-21 13:43:57,745 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-21 15:44:30] 2026-04-21 13:43:57,745 | INFO     | log transfer has been attempted: DONE
[2026-04-21 15:44:30] 2026-04-21 13:43:57,745 | INFO     | job 7105079623 has finished - writing final server update
[2026-04-21 15:44:30] 2026-04-21 13:43:57,746 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_8904/.job.ad'
[2026-04-21 15:44:30] 2026-04-21 13:43:57,746 | INFO     | total number of processed events: 400 (read)
[2026-04-21 15:44:30] 2026-04-21 13:43:57,760 | INFO     | using path: /var/lib/boinc/var/slot228/slots/1/PanDA_Pilot-7105079623/memory_monitor_summary.json (trf name=prmon)
[2026-04-21 15:44:30] 2026-04-21 13:43:57,761 | INFO     | extracted standard info from prmon json
[2026-04-21 15:44:30] 2026-04-21 13:43:57,761 | INFO     | extracted standard memory fields from prmon json
[2026-04-21 15:44:30] 2026-04-21 13:43:57,761 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-21 15:44:30] 2026-04-21 13:43:57,761 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-21 15:44:30] 2026-04-21 13:43:57,761 | INFO     | fitting pss+swap vs Time
[2026-04-21 15:44:30] 2026-04-21 13:43:57,762 | INFO     | sum of square deviations: 6094998.0
[2026-04-21 15:44:30] 2026-04-21 13:43:57,762 | INFO     | sum of deviations: 118337254.99999997
[2026-04-21 15:44:30] 2026-04-21 13:43:57,762 | INFO     | mean x (centered): 0.0
[2026-04-21 15:44:30] 2026-04-21 13:43:57,762 | INFO     | mean y: 2767261.222222222
[2026-04-21 15:44:30] 2026-04-21 13:43:57,762 | INFO     | intersect: 2767261.222222222
[2026-04-21 15:44:30] 2026-04-21 13:43:57,762 | INFO     | chi2: 0.00010739966099554811
[2026-04-21 15:44:30] 2026-04-21 13:43:57,762 | INFO     | current memory leak: 19.42 B/s (using 27 data points, chi2=0.00)
[2026-04-21 15:44:30] 2026-04-21 13:43:57,762 | INFO     | could have reported an average CPU frequency of 3635 MHz (5 samples)
[2026-04-21 15:44:30] 2026-04-21 13:43:57,762 | INFO     | ..............................
[2026-04-21 15:44:30] 2026-04-21 13:43:57,762 | INFO     | . Timing measurements:
[2026-04-21 15:44:30] 2026-04-21 13:43:57,762 | INFO     | . get job = 0 s
[2026-04-21 15:44:30] 2026-04-21 13:43:57,762 | INFO     | . initial setup = 3 s
[2026-04-21 15:44:30] 2026-04-21 13:43:57,762 | INFO     | . payload setup = 4 s
[2026-04-21 15:44:30] 2026-04-21 13:43:57,762 | INFO     | . stage-in = 0 s
[2026-04-21 15:44:30] 2026-04-21 13:43:57,762 | INFO     | . payload execution = 2070 s
[2026-04-21 15:44:30] 2026-04-21 13:43:57,762 | INFO     | . stage-out = 0 s
[2026-04-21 15:44:30] 2026-04-21 13:43:57,762 | INFO     | . log creation = 0 s
[2026-04-21 15:44:30] 2026-04-21 13:43:57,762 | INFO     | ..............................
[2026-04-21 15:44:30] 2026-04-21 13:43:57,961 | INFO     | 
[2026-04-21 15:44:30] 2026-04-21 13:43:57,961 | INFO     | job summary report
[2026-04-21 15:44:30] 2026-04-21 13:43:57,961 | INFO     | --------------------------------------------------
[2026-04-21 15:44:30] 2026-04-21 13:43:57,961 | INFO     | PanDA job id: 7105079623
[2026-04-21 15:44:30] 2026-04-21 13:43:57,961 | INFO     | task id: 49820244
[2026-04-21 15:44:30] 2026-04-21 13:43:57,961 | INFO     | errors: (none)
[2026-04-21 15:44:30] 2026-04-21 13:43:57,961 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-21 15:44:30] 2026-04-21 13:43:57,961 | INFO     | pilot state: finished 
[2026-04-21 15:44:30] 2026-04-21 13:43:57,961 | INFO     | transexitcode: 0
[2026-04-21 15:44:30] 2026-04-21 13:43:57,961 | INFO     | exeerrorcode: 0
[2026-04-21 15:44:30] 2026-04-21 13:43:57,961 | INFO     | exeerrordiag: 
[2026-04-21 15:44:30] 2026-04-21 13:43:57,962 | INFO     | exitcode: 0
[2026-04-21 15:44:30] 2026-04-21 13:43:57,962 | INFO     | exitmsg: OK
[2026-04-21 15:44:30] 2026-04-21 13:43:57,962 | INFO     | cpuconsumptiontime: 22462 s
[2026-04-21 15:44:30] 2026-04-21 13:43:57,962 | INFO     | nevents: 400
[2026-04-21 15:44:30] 2026-04-21 13:43:57,962 | INFO     | neventsw: 0
[2026-04-21 15:44:30] 2026-04-21 13:43:57,962 | INFO     | pid: 4054822
[2026-04-21 15:44:30] 2026-04-21 13:43:57,962 | INFO     | pgrp: 4054822
[2026-04-21 15:44:30] 2026-04-21 13:43:57,962 | INFO     | corecount: 12
[2026-04-21 15:44:30] 2026-04-21 13:43:57,962 | INFO     | event service: False
[2026-04-21 15:44:30] 2026-04-21 13:43:57,962 | INFO     | sizes: {0: 2283369, 10: 2283369, 2078: 2308431, 2079: 2317453, 2081: 2317509, 2083: 2317735}
[2026-04-21 15:44:30] 2026-04-21 13:43:57,962 | INFO     | --------------------------------------------------
[2026-04-21 15:44:30] 2026-04-21 13:43:57,962 | INFO     | 
[2026-04-21 15:44:30] 2026-04-21 13:43:57,962 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot228/slots/1
[2026-04-21 15:44:30] 2026-04-21 13:43:57,976 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-21 15:44:30] 2026-04-21 13:43:57,976 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-21 15:44:30] 2026-04-21 13:43:57,976 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-21 15:44:30] 2026-04-21 13:43:57,976 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-21 15:44:30] 2026-04-21 13:43:57,976 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-21 15:44:30] 2026-04-21 13:43:57,976 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-21 15:44:30] 2026-04-21 13:43:57,976 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-21 15:44:30] 2026-04-21 13:43:57,976 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-21 15:44:30] 2026-04-21 13:43:57,976 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-21 15:44:30] 2026-04-21 13:43:57,976 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-21 15:44:30] 2026-04-21 13:43:57,976 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-21 15:44:30] 2026-04-21 13:43:57,976 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-21 15:44:30] 2026-04-21 13:43:57,976 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-21 15:44:30] 2026-04-21 13:43:57,976 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-21 15:44:30] 2026-04-21 13:43:57,976 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-21 15:44:30] 2026-04-21 13:43:57,977 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-21 15:44:30] 2026-04-21 13:43:57,977 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-21 15:44:30] 2026-04-21 13:43:57,977 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-21 15:44:30] 2026-04-21 13:43:57,977 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-21 15:44:30] 2026-04-21 13:43:57,977 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-21 15:44:30] 2026-04-21 13:43:57,977 | INFO     | job 7105079623 has completed (purged errors)
[2026-04-21 15:44:30] 2026-04-21 13:43:57,977 | INFO     | overall cleanup function is called
[2026-04-21 15:44:30] 2026-04-21 13:43:58,982 | INFO     | --- collectZombieJob: --- 10, [4054822]
[2026-04-21 15:44:30] 2026-04-21 13:43:58,986 | INFO     | zombie collector waiting for pid 4054822
[2026-04-21 15:44:30] 2026-04-21 13:43:58,986 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-21 15:44:30] 2026-04-21 13:43:58,986 | INFO     | collected zombie processes
[2026-04-21 15:44:30] 2026-04-21 13:43:58,986 | INFO     | will attempt to kill all subprocesses of pid=4054822
[2026-04-21 15:44:30] 2026-04-21 13:43:59,172 | INFO     | process IDs to be killed: [4054822] (in reverse order)
[2026-04-21 15:44:30] 2026-04-21 13:43:59,261 | WARNING  | found no corresponding commands to process id(s)
[2026-04-21 15:44:30] 2026-04-21 13:43:59,261 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-21 15:44:30] 2026-04-21 13:43:59,277 | INFO     | did not find any defunct processes belonging to 4054822
[2026-04-21 15:44:30] 2026-04-21 13:43:59,287 | INFO     | did not find any defunct processes belonging to 4054822
[2026-04-21 15:44:30] 2026-04-21 13:43:59,288 | INFO     | Ready for new job
[2026-04-21 15:44:30] 2026-04-21 13:43:59,288 | INFO     | **************************************
[2026-04-21 15:44:30] 2026-04-21 13:43:59,288 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-21 15:44:30] 2026-04-21 13:43:59,288 | INFO     | **************************************
[2026-04-21 15:44:30] 2026-04-21 13:43:59,288 | INFO     | 
[2026-04-21 15:44:30] 2026-04-21 13:43:59,291 | INFO     | architecture information:
[2026-04-21 15:44:30] 2026-04-21 13:43:59,291 | INFO     | executing command: cat /etc/os-release
[2026-04-21 15:44:30] 2026-04-21 13:43:59,298 | INFO     | cat /etc/os-release:
[2026-04-21 15:44:30] NAME="CentOS Linux"
[2026-04-21 15:44:30] VERSION="7 (Core)"
[2026-04-21 15:44:30] ID="centos"
[2026-04-21 15:44:30] ID_LIKE="rhel fedora"
[2026-04-21 15:44:30] VERSION_ID="7"
[2026-04-21 15:44:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-21 15:44:30] ANSI_COLOR="0;31"
[2026-04-21 15:44:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-21 15:44:30] HOME_URL="https://www.centos.org/"
[2026-04-21 15:44:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-21 15:44:30] 
[2026-04-21 15:44:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-21 15:44:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-21 15:44:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-21 15:44:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-21 15:44:30] 
[2026-04-21 15:44:30] 2026-04-21 13:43:59,298 | INFO     | **************************************
[2026-04-21 15:44:30] 2026-04-21 13:43:59,800 | INFO     | executing command: df -mP /var/lib/boinc/var/slot228/slots/1
[2026-04-21 15:44:30] 2026-04-21 13:43:59,810 | INFO     | sufficient remaining disk space (298268491776 B)
[2026-04-21 15:44:30] 2026-04-21 13:43:59,810 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-21 15:44:30] 2026-04-21 13:43:59,810 | INFO     | current server update state: UPDATING_FINAL
[2026-04-21 15:44:30] 2026-04-21 13:43:59,810 | INFO     | update_server=False
[2026-04-21 15:44:30] 2026-04-21 13:43:59,810 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-21 15:44:30] 2026-04-21 13:43:59,810 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-21 15:44:30] 2026-04-21 13:44:00,226 | WARNING  | process 4054822 can no longer be monitored (due to stat problems) - aborting
[2026-04-21 15:44:30] 2026-04-21 13:44:00,372 | INFO     | using path: /var/lib/boinc/var/slot228/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-04-21 15:44:30] 2026-04-21 13:44:00,373 | INFO     | using path: /var/lib/boinc/var/slot228/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-04-21 15:44:30] 2026-04-21 13:44:00,373 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-04-21 15:44:30] 2026-04-21 13:44:00,373 | WARNING  | maxPSS not found in memory monitor output
[2026-04-21 15:44:30] 2026-04-21 13:44:00,373 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot228/slots/1/PanDA_Pilot-7105079623/payload.stdout) since it has not been created yet
[2026-04-21 15:44:30] 2026-04-21 13:44:00,373 | INFO     | executing command: df -mP /var/lib/boinc/var/slot228/slots/1
[2026-04-21 15:44:30] 2026-04-21 13:44:00,383 | INFO     | sufficient remaining disk space (298268491776 B)
[2026-04-21 15:44:30] 2026-04-21 13:44:00,383 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-04-21 15:44:30] 2026-04-21 13:44:00,383 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot228/slots/1/PanDA_Pilot-7105079623/HITS.49820244._013065.pool.root.1 since it does not exist
[2026-04-21 15:44:30] 2026-04-21 13:44:00,398 | INFO     | all job control threads have been joined
[2026-04-21 15:44:30] 2026-04-21 13:44:00,592 | INFO     | number of running child processes to parent process 4054822: 1
[2026-04-21 15:44:30] 2026-04-21 13:44:00,593 | INFO     | maximum number of monitored processes: 6
[2026-04-21 15:44:30] 2026-04-21 13:44:00,593 | INFO     | aborting job monitoring since job object (job id=7105079623) has expired
[2026-04-21 15:44:30] 2026-04-21 13:44:00,593 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-21 15:44:30] 2026-04-21 13:44:00,593 | INFO     | will abort loop
[2026-04-21 15:44:30] 2026-04-21 13:44:00,594 | INFO     | all data control threads have been joined
[2026-04-21 15:44:30] 2026-04-21 13:44:00,699 | INFO     | all payload control threads have been joined
[2026-04-21 15:44:30] 2026-04-21 13:44:00,811 | INFO     | [job] retrieve thread has finished
[2026-04-21 15:44:30] 2026-04-21 13:44:01,183 | INFO     | [payload] validate_post thread has finished
[2026-04-21 15:44:30] 2026-04-21 13:44:01,404 | INFO     | [job] control thread has finished
[2026-04-21 15:44:30] 2026-04-21 13:44:01,598 | INFO     | [job] job monitor thread has finished
[2026-04-21 15:44:30] 2026-04-21 13:44:01,600 | INFO     | [data] control thread has finished
[2026-04-21 15:44:30] 2026-04-21 13:44:01,704 | INFO     | [payload] control thread has finished
[2026-04-21 15:44:30] 2026-04-21 13:44:01,816 | INFO     | [data] copytool_out thread has finished
[2026-04-21 15:44:30] 2026-04-21 13:44:02,078 | INFO     | [job] create_data_payload thread has finished
[2026-04-21 15:44:30] 2026-04-21 13:44:02,094 | INFO     | [job] validate thread has finished
[2026-04-21 15:44:30] 2026-04-21 13:44:02,183 | INFO     | [payload] validate_pre thread has finished
[2026-04-21 15:44:30] 2026-04-21 13:44:02,251 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-21 15:44:30] 2026-04-21 13:44:02,254 | INFO     | [payload] failed_post thread has finished
[2026-04-21 15:44:30] 2026-04-21 13:44:02,261 | INFO     | [payload] execute_payloads thread has finished
[2026-04-21 15:44:30] 2026-04-21 13:44:02,294 | INFO     | [data] copytool_in thread has finished
[2026-04-21 15:44:30] 2026-04-21 13:44:02,809 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-21 15:44:30] 2026-04-21 13:44:03,814 | INFO     | [job] queue monitor thread has finished
[2026-04-21 15:44:30] 2026-04-21 13:44:06,257 | INFO     | [data] queue_monitor thread has finished
[2026-04-21 15:44:30] 2026-04-21 13:44:07,088 | INFO     | [monitor] cgroup control has ended
[2026-04-21 15:44:30] 2026-04-21 13:44:09,919 | INFO     | job.realtimelogging is not enabled
[2026-04-21 15:44:30] 2026-04-21 13:44:10,925 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-21 15:44:30] 2026-04-21 13:44:12,935 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22708649400128)>', '<ExcThread(monitor, started 22708407768832)>']
[2026-04-21 15:44:30] 2026-04-21 13:44:17,960 | INFO     | all workflow threads have been joined
[2026-04-21 15:44:30] 2026-04-21 13:44:17,961 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-21 15:44:30] 2026-04-21 13:44:17,961 | INFO     | traces error code: 0
[2026-04-21 15:44:30] 2026-04-21 13:44:17,961 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-21 15:44:30] 2026-04-21 13:44:30,391 | INFO     | PID=4048954 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-21 15:44:30] 2026-04-21 13:44:30,391 | INFO     | .. there are 4 such processes running
[2026-04-21 15:44:30] 2026-04-21 13:44:30,391 | INFO     | found 0 job(s) in 20 queues
[2026-04-21 15:44:30] 2026-04-21 13:44:30,391 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-21 15:44:30] 2026-04-21 13:44:30,392 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-21 15:44:30] 2026-04-21 13:44:30,392 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-21 15:44:30] 2026-04-21 13:44:30,392 | INFO     | [monitor] control thread has ended
[2026-04-21 15:44:30] 2026-04-21 13:44:30,470 [wrapper] ==== pilot stdout END ====
[2026-04-21 15:44:30] 2026-04-21 13:44:30,473 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-21 15:44:30] 2026-04-21 13:44:30,474 [wrapper] pilotpid: 4048954
[2026-04-21 15:44:30] 2026-04-21 13:44:30,477 [wrapper] Pilot exit status: 0
[2026-04-21 15:44:30] 2026-04-21 13:44:30,482 [wrapper] pandaids: 7105079623
[2026-04-21 15:44:30] 2026-04-21 13:44:30,549 [wrapper] cleanup supervisor_pilot 4152974 4048955
[2026-04-21 15:44:30] 2026-04-21 13:44:30,550 [wrapper] Test setup, not cleaning
[2026-04-21 15:44:30] 2026-04-21 13:44:30,552 [wrapper] apfmon messages muted
[2026-04-21 15:44:30] 2026-04-21 13:44:30,554 [wrapper] ==== wrapper stdout END ====
[2026-04-21 15:44:30] 2026-04-21 13:44:30,558 [wrapper] ==== wrapper stderr END ====
[2026-04-21 15:44:30]  *** Error codes and diagnostics ***
[2026-04-21 15:44:30]     "exeErrorCode": 0,
[2026-04-21 15:44:30]     "pilotErrorCode": 0,
[2026-04-21 15:44:30]  *** Listing of results directory ***
[2026-04-21 15:44:30] total 2460280
[2026-04-21 15:44:30] -rw-r--r--. 1 boinc boinc     644190 Apr 21 09:41 pilot3.tar.gz
[2026-04-21 15:44:30] -rwx------. 1 boinc boinc      36322 Apr 21 09:42 runpilot2-wrapper.sh
[2026-04-21 15:44:30] -rw-r--r--. 1 boinc boinc       5094 Apr 21 11:22 queuedata.json
[2026-04-21 15:44:30] -rw-r--r--. 1 boinc boinc        100 Apr 21 15:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-21 15:44:30] -rwxr-xr-x. 1 boinc boinc       7986 Apr 21 15:08 run_atlas
[2026-04-21 15:44:30] -rw-r--r--. 1 boinc boinc        105 Apr 21 15:08 job.xml
[2026-04-21 15:44:30] -rw-r--r--. 2 boinc boinc     656925 Apr 21 15:08 input.tar.gz
[2026-04-21 15:44:30] -rw-r--r--. 1 boinc boinc       6626 Apr 21 15:08 init_data.xml
[2026-04-21 15:44:30] -rw-r--r--. 2 boinc boinc 2245030346 Apr 21 15:08 EVNT.49820242._000025.pool.root.1
[2026-04-21 15:44:30] -rw-r--r--. 2 boinc boinc      15665 Apr 21 15:08 start_atlas.sh
[2026-04-21 15:44:30] drwxrwx--x. 2 boinc boinc       4096 Apr 21 15:08 shared
[2026-04-21 15:44:30] -rw-r--r--. 1 boinc boinc          0 Apr 21 15:08 boinc_lockfile
[2026-04-21 15:44:30] -rw-r--r--. 1 boinc boinc       2551 Apr 21 15:08 pandaJob.out
[2026-04-21 15:44:30] -rw-------. 1 boinc boinc     993801 Apr 21 15:09 agis_schedconf.cvmfs.json
[2026-04-21 15:44:30] -rw-------. 1 boinc boinc    1512404 Apr 21 15:09 agis_ddmendpoints.agis.ALL.json
[2026-04-21 15:44:30] -rw-------. 1 boinc boinc        443 Apr 21 15:09 workernode_map.json
[2026-04-21 15:44:30] drwx------. 5 boinc boinc       4096 Apr 21 15:09 pilot3
[2026-04-21 15:44:30] -rw-------. 1 boinc boinc  268987126 Apr 21 15:43 HITS.49820244._013065.pool.root.1
[2026-04-21 15:44:30] -rw-r--r--. 1 boinc boinc        488 Apr 21 15:43 boinc_task_state.xml
[2026-04-21 15:44:30] -rw-------. 1 boinc boinc         95 Apr 21 15:43 pilot_heartbeat.json
[2026-04-21 15:44:30] -rw-------. 1 boinc boinc       1030 Apr 21 15:43 memory_monitor_summary.json
[2026-04-21 15:44:30] -rw-------. 1 boinc boinc     383518 Apr 21 15:43 log.49820244._013065.job.log.tgz.1
[2026-04-21 15:44:30] -rw-------. 1 boinc boinc       6374 Apr 21 15:43 heartbeat_new.json
[2026-04-21 15:44:30] -rw-------. 1 boinc boinc       6265 Apr 21 15:43 heartbeat.json
[2026-04-21 15:44:30] -rw-r--r--. 1 boinc boinc       8192 Apr 21 15:44 boinc_mmap_file
[2026-04-21 15:44:30] -rw-r--r--. 1 boinc boinc         27 Apr 21 15:44 wrapper_checkpoint.txt
[2026-04-21 15:44:30] -rw-------. 1 boinc boinc        822 Apr 21 15:44 pilotlog.txt
[2026-04-21 15:44:30] -rw-------. 1 boinc boinc     245205 Apr 21 15:44 log.49820244._013065.job.log.1
[2026-04-21 15:44:30] -rw-------. 1 boinc boinc        357 Apr 21 15:44 output.list
[2026-04-21 15:44:30] -rw-r--r--. 1 boinc boinc        410 Apr 21 15:44 runtime_log
[2026-04-21 15:44:30] -rw-------. 1 boinc boinc     645120 Apr 21 15:44 result.tar.gz
[2026-04-21 15:44:30] -rw-r--r--. 1 boinc boinc       8845 Apr 21 15:44 runtime_log.err
[2026-04-21 15:44:30] -rw-------. 1 boinc boinc        659 Apr 21 15:44 2a6839d4903b.diag
[2026-04-21 15:44:30] -rw-r--r--. 1 boinc boinc      21911 Apr 21 15:44 stderr.txt
[2026-04-21 15:44:30] HITS file was successfully produced:
[2026-04-21 15:44:30] -rw-------. 1 boinc boinc 268987126 Apr 21 15:43 shared/HITS.pool.root.1
[2026-04-21 15:44:30]  *** Contents of shared directory: ***
[2026-04-21 15:44:30] total 2456400
[2026-04-21 15:44:30] -rw-r--r--. 2 boinc boinc     656925 Apr 21 15:08 input.tar.gz
[2026-04-21 15:44:30] -rw-r--r--. 2 boinc boinc 2245030346 Apr 21 15:08 ATLAS.root_0
[2026-04-21 15:44:30] -rw-r--r--. 2 boinc boinc      15665 Apr 21 15:08 start_atlas.sh
[2026-04-21 15:44:30] -rw-------. 1 boinc boinc  268987126 Apr 21 15:43 HITS.pool.root.1
[2026-04-21 15:44:30] -rw-------. 1 boinc boinc     645120 Apr 21 15:44 result.tar.gz
15:44:32 (4044069): run_atlas exited; CPU time 22495.480154
15:44:32 (4044069): called boinc_finish(0)

</stderr_txt>
]]>

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