Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:38:56 (900189): wrapper (7.7.26015): starting
13:38:56 (900189): wrapper: running run_atlas (--nthreads 4)
[2026-04-21 13:38:56] Arguments: --nthreads 4
[2026-04-21 13:38:56] Threads: 4
[2026-04-21 13:38:56] Checking for CVMFS
[2026-04-21 13:38:56] No cvmfs_config command found, will try listing directly
[2026-04-21 13:38:56] CVMFS is ok
[2026-04-21 13:38:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-21 13:38:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-21 13:38:56] Further information can be found at the LHC@home message board.
[2026-04-21 13:38:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-21 13:38:56] Checking for apptainer binary...
[2026-04-21 13:38:56] which: no apptainer in ((null))
[2026-04-21 13:38:56] apptainer is not installed, using version from CVMFS
[2026-04-21 13:38:56] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-21 13:38:57] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot124/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2026-04-21 13:38:57] apptainer works
[2026-04-21 13:38:57] Set ATHENA_PROC_NUMBER=4
[2026-04-21 13:38:57] Set ATHENA_CORE_NUMBER=4
[2026-04-21 13:38:57] Starting ATLAS job with PandaID=7105158211
[2026-04-21 13:38:57] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot124/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-21 17:04:41]  *** The last 200 lines of the pilot log: ***
[2026-04-21 17:04:41] 2026-04-21 15:03:56,167 | INFO     | maximum number of monitored processes: 6
[2026-04-21 17:04:41] 2026-04-21 15:03:56,564 | INFO     | 12286s have passed since pilot start - server update state is 'RUNNING'
[2026-04-21 17:04:41] 2026-04-21 15:03:57,326 | INFO     | job 7105158211 has state=finished
[2026-04-21 17:04:41] 2026-04-21 15:03:57,326 | INFO     | preparing for final server update for job 7105158211 in state='finished'
[2026-04-21 17:04:41] 2026-04-21 15:03:57,326 | INFO     | reading metadata from: /var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7105158211/jobReport.json
[2026-04-21 17:04:41] 2026-04-21 15:03:57,328 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot124/slots/0/workernode_map.json
[2026-04-21 17:04:41] 2026-04-21 15:03:57,329 | INFO     | this job has now completed (state=finished)
[2026-04-21 17:04:41] 2026-04-21 15:03:57,329 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-21 17:04:41] 2026-04-21 15:03:57,329 | INFO     | log transfer has been attempted: DONE
[2026-04-21 17:04:41] 2026-04-21 15:03:57,329 | INFO     | job 7105158211 has finished - writing final server update
[2026-04-21 17:04:41] 2026-04-21 15:03:57,329 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_9853/.job.ad'
[2026-04-21 17:04:41] 2026-04-21 15:03:57,330 | INFO     | total number of processed events: 400 (read)
[2026-04-21 17:04:41] 2026-04-21 15:03:57,351 | INFO     | using path: /var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7105158211/memory_monitor_summary.json (trf name=prmon)
[2026-04-21 17:04:41] 2026-04-21 15:03:57,352 | INFO     | extracted standard info from prmon json
[2026-04-21 17:04:41] 2026-04-21 15:03:57,352 | INFO     | extracted standard memory fields from prmon json
[2026-04-21 17:04:41] 2026-04-21 15:03:57,352 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-21 17:04:41] 2026-04-21 15:03:57,352 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-21 17:04:41] 2026-04-21 15:03:57,356 | INFO     | fitting pss+swap vs Time
[2026-04-21 17:04:41] 2026-04-21 15:03:57,356 | INFO     | sum of square deviations: 2518000700.0
[2026-04-21 17:04:41] 2026-04-21 15:03:57,357 | INFO     | sum of deviations: 13283841717.000004
[2026-04-21 17:04:41] 2026-04-21 15:03:57,357 | INFO     | mean x (centered): 0.0
[2026-04-21 17:04:41] 2026-04-21 15:03:57,357 | INFO     | mean y: 2376856.0149253733
[2026-04-21 17:04:41] 2026-04-21 15:03:57,357 | INFO     | intersect: 2376856.0149253733
[2026-04-21 17:04:41] 2026-04-21 15:03:57,358 | INFO     | chi2: 1.3556142496116799
[2026-04-21 17:04:41] 2026-04-21 15:03:57,358 | INFO     | sum of square deviations: 2334722845.0
[2026-04-21 17:04:41] 2026-04-21 15:03:57,359 | INFO     | sum of deviations: 12887478692.500004
[2026-04-21 17:04:41] 2026-04-21 15:03:57,359 | INFO     | mean x (centered): 0.0
[2026-04-21 17:04:41] 2026-04-21 15:03:57,359 | INFO     | mean y: 2376526.198979592
[2026-04-21 17:04:41] 2026-04-21 15:03:57,359 | INFO     | intersect: 2376526.198979592
[2026-04-21 17:04:41] 2026-04-21 15:03:57,360 | INFO     | chi2: 1.3563534049950188
[2026-04-21 17:04:41] 2026-04-21 15:03:57,360 | INFO     | current chi2=1.3563534049950188 (change=-0.05452549525432039 %)
[2026-04-21 17:04:41] 2026-04-21 15:03:57,360 | INFO     | right removable region: 195
[2026-04-21 17:04:41] 2026-04-21 15:03:57,360 | INFO     | sum of square deviations: 2334722845.0
[2026-04-21 17:04:41] 2026-04-21 15:03:57,361 | INFO     | sum of deviations: -12222586713.999998
[2026-04-21 17:04:41] 2026-04-21 15:03:57,361 | INFO     | mean x (centered): 0.0
[2026-04-21 17:04:41] 2026-04-21 15:03:57,361 | INFO     | mean y: 2397796.7346938774
[2026-04-21 17:04:41] 2026-04-21 15:03:57,361 | INFO     | intersect: 2397796.7346938774
[2026-04-21 17:04:41] 2026-04-21 15:03:57,362 | INFO     | chi2: 0.033399005439127494
[2026-04-21 17:04:41] 2026-04-21 15:03:57,362 | INFO     | current chi2=0.033399005439127494 (change=97.53624562085454 %)
[2026-04-21 17:04:41] 2026-04-21 15:03:57,362 | INFO     | sum of square deviations: 2160561440.0
[2026-04-21 17:04:41] 2026-04-21 15:03:57,363 | INFO     | sum of deviations: -11119069142.0
[2026-04-21 17:04:41] 2026-04-21 15:03:57,363 | INFO     | mean x (centered): 0.0
[2026-04-21 17:04:41] 2026-04-21 15:03:57,363 | INFO     | mean y: 2396824.7486910997
[2026-04-21 17:04:41] 2026-04-21 15:03:57,363 | INFO     | intersect: 2396824.7486910997
[2026-04-21 17:04:41] 2026-04-21 15:03:57,364 | INFO     | chi2: 0.03316062261284183
[2026-04-21 17:04:41] 2026-04-21 15:03:57,364 | INFO     | current chi2=0.03316062261284183 (change=0.7137422900814815 %)
[2026-04-21 17:04:41] 2026-04-21 15:03:57,364 | INFO     | left removable region: 10
[2026-04-21 17:04:41] 2026-04-21 15:03:57,364 | INFO     | sum of square deviations: 1963274020.0
[2026-04-21 17:04:41] 2026-04-21 15:03:57,365 | INFO     | sum of deviations: -10871421220.0
[2026-04-21 17:04:41] 2026-04-21 15:03:57,365 | INFO     | mean x (centered): 0.0
[2026-04-21 17:04:41] 2026-04-21 15:03:57,365 | INFO     | mean y: 2397054.637837838
[2026-04-21 17:04:41] 2026-04-21 15:03:57,365 | INFO     | intersect: 2397054.637837838
[2026-04-21 17:04:41] 2026-04-21 15:03:57,366 | INFO     | chi2: 0.03257614427907591
[2026-04-21 17:04:41] 2026-04-21 15:03:57,366 | INFO     | current memory leak: -5.54 B/s (using 185 data points, chi2=0.03)
[2026-04-21 17:04:41] 2026-04-21 15:03:57,366 | INFO     | could have reported an average CPU frequency of 2782 MHz (10 samples)
[2026-04-21 17:04:41] 2026-04-21 15:03:57,366 | INFO     | ..............................
[2026-04-21 17:04:41] 2026-04-21 15:03:57,366 | INFO     | . Timing measurements:
[2026-04-21 17:04:41] 2026-04-21 15:03:57,367 | INFO     | . get job = 0 s
[2026-04-21 17:04:41] 2026-04-21 15:03:57,367 | INFO     | . initial setup = 7 s
[2026-04-21 17:04:41] 2026-04-21 15:03:57,367 | INFO     | . payload setup = 12 s
[2026-04-21 17:04:41] 2026-04-21 15:03:57,367 | INFO     | . stage-in = 0 s
[2026-04-21 17:04:41] 2026-04-21 15:03:57,367 | INFO     | . payload execution = 12247 s
[2026-04-21 17:04:41] 2026-04-21 15:03:57,367 | INFO     | . stage-out = 1 s
[2026-04-21 17:04:41] 2026-04-21 15:03:57,367 | INFO     | . log creation = 0 s
[2026-04-21 17:04:41] 2026-04-21 15:03:57,367 | INFO     | ..............................
[2026-04-21 17:04:41] 2026-04-21 15:03:57,487 | INFO     | 
[2026-04-21 17:04:41] 2026-04-21 15:03:57,488 | INFO     | job summary report
[2026-04-21 17:04:41] 2026-04-21 15:03:57,488 | INFO     | --------------------------------------------------
[2026-04-21 17:04:41] 2026-04-21 15:03:57,488 | INFO     | PanDA job id: 7105158211
[2026-04-21 17:04:41] 2026-04-21 15:03:57,488 | INFO     | task id: 49820375
[2026-04-21 17:04:41] 2026-04-21 15:03:57,488 | INFO     | errors: (none)
[2026-04-21 17:04:41] 2026-04-21 15:03:57,488 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-21 17:04:41] 2026-04-21 15:03:57,488 | INFO     | pilot state: finished 
[2026-04-21 17:04:41] 2026-04-21 15:03:57,488 | INFO     | transexitcode: 0
[2026-04-21 17:04:41] 2026-04-21 15:03:57,488 | INFO     | exeerrorcode: 0
[2026-04-21 17:04:41] 2026-04-21 15:03:57,488 | INFO     | exeerrordiag: 
[2026-04-21 17:04:41] 2026-04-21 15:03:57,489 | INFO     | exitcode: 0
[2026-04-21 17:04:41] 2026-04-21 15:03:57,489 | INFO     | exitmsg: OK
[2026-04-21 17:04:41] 2026-04-21 15:03:57,489 | INFO     | cpuconsumptiontime: 47424 s
[2026-04-21 17:04:41] 2026-04-21 15:03:57,489 | INFO     | nevents: 400
[2026-04-21 17:04:41] 2026-04-21 15:03:57,489 | INFO     | neventsw: 0
[2026-04-21 17:04:41] 2026-04-21 15:03:57,489 | INFO     | pid: 910474
[2026-04-21 17:04:41] 2026-04-21 15:03:57,489 | INFO     | pgrp: 910474
[2026-04-21 17:04:41] 2026-04-21 15:03:57,489 | INFO     | corecount: 4
[2026-04-21 17:04:41] 2026-04-21 15:03:57,489 | INFO     | event service: False
[2026-04-21 17:04:41] 2026-04-21 15:03:57,489 | INFO     | sizes: {0: 2281774, 1: 2283404, 11: 2283432, 12264: 2313829, 12265: 2315873, 12267: 2315929, 12268: 2316251}
[2026-04-21 17:04:41] 2026-04-21 15:03:57,489 | INFO     | --------------------------------------------------
[2026-04-21 17:04:41] 2026-04-21 15:03:57,489 | INFO     | 
[2026-04-21 17:04:41] 2026-04-21 15:03:57,490 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot124/slots/0
[2026-04-21 17:04:41] 2026-04-21 15:03:57,519 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-21 17:04:41] 2026-04-21 15:03:57,519 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-21 17:04:41] 2026-04-21 15:03:57,520 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-21 17:04:41] 2026-04-21 15:03:57,520 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-21 17:04:41] 2026-04-21 15:03:57,520 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-21 17:04:41] 2026-04-21 15:03:57,520 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-21 17:04:41] 2026-04-21 15:03:57,520 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-21 17:04:41] 2026-04-21 15:03:57,520 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-21 17:04:41] 2026-04-21 15:03:57,520 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-21 17:04:41] 2026-04-21 15:03:57,520 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-21 17:04:41] 2026-04-21 15:03:57,520 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-21 17:04:41] 2026-04-21 15:03:57,520 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-21 17:04:41] 2026-04-21 15:03:57,520 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-21 17:04:41] 2026-04-21 15:03:57,521 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-21 17:04:41] 2026-04-21 15:03:57,521 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-21 17:04:41] 2026-04-21 15:03:57,521 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-21 17:04:41] 2026-04-21 15:03:57,521 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-21 17:04:41] 2026-04-21 15:03:57,521 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-21 17:04:41] 2026-04-21 15:03:57,521 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-21 17:04:41] 2026-04-21 15:03:57,521 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-21 17:04:41] 2026-04-21 15:03:57,521 | INFO     | job 7105158211 has completed (purged errors)
[2026-04-21 17:04:41] 2026-04-21 15:03:57,521 | INFO     | overall cleanup function is called
[2026-04-21 17:04:41] 2026-04-21 15:03:58,532 | INFO     | --- collectZombieJob: --- 10, [910474]
[2026-04-21 17:04:41] 2026-04-21 15:03:58,532 | INFO     | zombie collector waiting for pid 910474
[2026-04-21 17:04:41] 2026-04-21 15:03:58,532 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-21 17:04:41] 2026-04-21 15:03:58,532 | INFO     | collected zombie processes
[2026-04-21 17:04:41] 2026-04-21 15:03:58,532 | INFO     | will attempt to kill all subprocesses of pid=910474
[2026-04-21 17:04:41] 2026-04-21 15:03:59,225 | INFO     | process IDs to be killed: [910474] (in reverse order)
[2026-04-21 17:04:41] 2026-04-21 15:03:59,484 | WARNING  | found no corresponding commands to process id(s)
[2026-04-21 17:04:41] 2026-04-21 15:03:59,484 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-21 17:04:41] 2026-04-21 15:03:59,510 | INFO     | did not find any defunct processes belonging to 910474
[2026-04-21 17:04:41] 2026-04-21 15:03:59,533 | INFO     | did not find any defunct processes belonging to 910474
[2026-04-21 17:04:41] 2026-04-21 15:03:59,533 | INFO     | Ready for new job
[2026-04-21 17:04:41] 2026-04-21 15:03:59,536 | INFO     | **************************************
[2026-04-21 17:04:41] 2026-04-21 15:03:59,536 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-21 17:04:41] 2026-04-21 15:03:59,536 | INFO     | **************************************
[2026-04-21 17:04:41] 2026-04-21 15:03:59,536 | INFO     | 
[2026-04-21 17:04:41] 2026-04-21 15:03:59,544 | INFO     | architecture information:
[2026-04-21 17:04:41] 2026-04-21 15:03:59,544 | INFO     | executing command: cat /etc/os-release
[2026-04-21 17:04:41] 2026-04-21 15:03:59,569 | INFO     | cat /etc/os-release:
[2026-04-21 17:04:41] NAME="CentOS Linux"
[2026-04-21 17:04:41] VERSION="7 (Core)"
[2026-04-21 17:04:41] ID="centos"
[2026-04-21 17:04:41] ID_LIKE="rhel fedora"
[2026-04-21 17:04:41] VERSION_ID="7"
[2026-04-21 17:04:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-21 17:04:41] ANSI_COLOR="0;31"
[2026-04-21 17:04:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-21 17:04:41] HOME_URL="https://www.centos.org/"
[2026-04-21 17:04:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-21 17:04:41] 
[2026-04-21 17:04:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-21 17:04:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-21 17:04:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-21 17:04:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-21 17:04:41] 
[2026-04-21 17:04:41] 2026-04-21 15:03:59,569 | INFO     | **************************************
[2026-04-21 17:04:41] 2026-04-21 15:04:00,073 | INFO     | executing command: df -mP /var/lib/boinc/var/slot124/slots/0
[2026-04-21 17:04:41] 2026-04-21 15:04:00,098 | INFO     | sufficient remaining disk space (139665080320 B)
[2026-04-21 17:04:41] 2026-04-21 15:04:00,098 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-21 17:04:41] 2026-04-21 15:04:00,098 | INFO     | current server update state: UPDATING_FINAL
[2026-04-21 17:04:41] 2026-04-21 15:04:00,099 | INFO     | update_server=False
[2026-04-21 17:04:41] 2026-04-21 15:04:00,099 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-21 17:04:41] 2026-04-21 15:04:00,099 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-21 17:04:41] 2026-04-21 15:04:00,099 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-21 17:04:41] 2026-04-21 15:04:00,100 | INFO     | aborting loop
[2026-04-21 17:04:41] 2026-04-21 15:04:00,584 | INFO     | all data control threads have been joined
[2026-04-21 17:04:41] 2026-04-21 15:04:01,103 | INFO     | [job] retrieve thread has finished
[2026-04-21 17:04:41] 2026-04-21 15:04:01,106 | INFO     | [job] job monitor thread has finished
[2026-04-21 17:04:41] 2026-04-21 15:04:01,167 | INFO     | all payload control threads have been joined
[2026-04-21 17:04:41] 2026-04-21 15:04:01,168 | INFO     | all job control threads have been joined
[2026-04-21 17:04:41] 2026-04-21 15:04:01,347 | INFO     | [job] validate thread has finished
[2026-04-21 17:04:41] 2026-04-21 15:04:01,426 | INFO     | [payload] execute_payloads thread has finished
[2026-04-21 17:04:41] 2026-04-21 15:04:01,589 | INFO     | [data] control thread has finished
[2026-04-21 17:04:41] 2026-04-21 15:04:01,676 | INFO     | [job] create_data_payload thread has finished
[2026-04-21 17:04:41] 2026-04-21 15:04:01,852 | INFO     | [payload] validate_pre thread has finished
[2026-04-21 17:04:41] 2026-04-21 15:04:01,973 | INFO     | [payload] failed_post thread has finished
[2026-04-21 17:04:41] 2026-04-21 15:04:02,028 | INFO     | [payload] validate_post thread has finished
[2026-04-21 17:04:41] 2026-04-21 15:04:02,079 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-21 17:04:41] 2026-04-21 15:04:02,105 | INFO     | [data] copytool_out thread has finished
[2026-04-21 17:04:41] 2026-04-21 15:04:02,171 | INFO     | [job] control thread has finished
[2026-04-21 17:04:41] 2026-04-21 15:04:02,172 | INFO     | [payload] control thread has finished
[2026-04-21 17:04:41] 2026-04-21 15:04:02,220 | INFO     | [data] copytool_in thread has finished
[2026-04-21 17:04:41] 2026-04-21 15:04:02,459 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-21 17:04:41] 2026-04-21 15:04:03,465 | INFO     | [job] queue monitor thread has finished
[2026-04-21 17:04:41] 2026-04-21 15:04:06,085 | INFO     | [data] queue_monitor thread has finished
[2026-04-21 17:04:41] 2026-04-21 15:04:10,276 | INFO     | job.realtimelogging is not enabled
[2026-04-21 17:04:41] 2026-04-21 15:04:11,284 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-21 17:04:41] 2026-04-21 15:04:30,380 | INFO     | PID=904626 has CPU usage=9.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-21 17:04:41] 2026-04-21 15:04:30,380 | INFO     | .. there are 13 such processes running
[2026-04-21 17:04:41] 2026-04-21 15:04:30,380 | INFO     | found 0 job(s) in 20 queues
[2026-04-21 17:04:41] 2026-04-21 15:04:30,380 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-21 17:04:41] 2026-04-21 15:04:30,380 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-21 17:04:41] 2026-04-21 15:04:34,474 | INFO     | [monitor] cgroup control has ended
[2026-04-21 17:04:41] 2026-04-21 15:04:36,220 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22711882635072)>', '<ExcThread(monitor, started 22711575226112)>']
[2026-04-21 17:04:41] 2026-04-21 15:04:36,410 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-21 17:04:41] 2026-04-21 15:04:36,411 | INFO     | [monitor] control thread has ended
[2026-04-21 17:04:41] 2026-04-21 15:04:41,246 | INFO     | all workflow threads have been joined
[2026-04-21 17:04:41] 2026-04-21 15:04:41,246 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-21 17:04:41] 2026-04-21 15:04:41,248 | INFO     | traces error code: 0
[2026-04-21 17:04:41] 2026-04-21 15:04:41,248 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-21 17:04:41] 2026-04-21 15:04:41,388 [wrapper] ==== pilot stdout END ====
[2026-04-21 17:04:41] 2026-04-21 15:04:41,392 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-21 17:04:41] 2026-04-21 15:04:41,396 [wrapper] pilotpid: 904626
[2026-04-21 17:04:41] 2026-04-21 15:04:41,400 [wrapper] Pilot exit status: 0
[2026-04-21 17:04:41] 2026-04-21 15:04:41,416 [wrapper] pandaids: 7105158211
[2026-04-21 17:04:41] 2026-04-21 15:04:41,586 [wrapper] cleanup supervisor_pilot 1242298 904627
[2026-04-21 17:04:41] 2026-04-21 15:04:41,590 [wrapper] Test setup, not cleaning
[2026-04-21 17:04:41] 2026-04-21 15:04:41,594 [wrapper] apfmon messages muted
[2026-04-21 17:04:41] 2026-04-21 15:04:41,598 [wrapper] ==== wrapper stdout END ====
[2026-04-21 17:04:41] 2026-04-21 15:04:41,601 [wrapper] ==== wrapper stderr END ====
[2026-04-21 17:04:41]  *** Error codes and diagnostics ***
[2026-04-21 17:04:41]     "exeErrorCode": 0,
[2026-04-21 17:04:41]     "pilotErrorCode": 0,
[2026-04-21 17:04:41]  *** Listing of results directory ***
[2026-04-21 17:04:41] total 2445696
[2026-04-21 17:04:41] -rwx------. 1 boinc boinc      36322 Apr 21 09:50 runpilot2-wrapper.sh
[2026-04-21 17:04:41] -rw-r--r--. 1 boinc boinc     644190 Apr 21 11:10 pilot3.tar.gz
[2026-04-21 17:04:41] -rw-r--r--. 1 boinc boinc       5094 Apr 21 11:22 queuedata.json
[2026-04-21 17:04:41] -rw-r--r--. 1 boinc boinc        100 Apr 21 13:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-21 17:04:41] -rwxr-xr-x. 1 boinc boinc       7986 Apr 21 13:22 run_atlas
[2026-04-21 17:04:41] -rw-r--r--. 1 boinc boinc        105 Apr 21 13:22 job.xml
[2026-04-21 17:04:41] -rw-r--r--. 1 boinc boinc       6540 Apr 21 13:38 init_data.xml
[2026-04-21 17:04:41] -rw-r--r--. 2 boinc boinc 2228939427 Apr 21 13:38 EVNT.49820373._000040.pool.root.1
[2026-04-21 17:04:41] -rw-r--r--. 2 boinc boinc      15665 Apr 21 13:38 start_atlas.sh
[2026-04-21 17:04:41] drwxrwx--x. 2 boinc boinc       4096 Apr 21 13:38 shared
[2026-04-21 17:04:41] -rw-r--r--. 2 boinc boinc     656940 Apr 21 13:38 input.tar.gz
[2026-04-21 17:04:41] -rw-r--r--. 1 boinc boinc          0 Apr 21 13:38 boinc_lockfile
[2026-04-21 17:04:41] -rw-r--r--. 1 boinc boinc       2586 Apr 21 13:38 pandaJob.out
[2026-04-21 17:04:41] -rw-------. 1 boinc boinc     995866 Apr 21 13:39 agis_schedconf.cvmfs.json
[2026-04-21 17:04:41] -rw-------. 1 boinc boinc        441 Apr 21 13:39 workernode_map.json
[2026-04-21 17:04:41] drwx------. 5 boinc boinc       4096 Apr 21 13:39 pilot3
[2026-04-21 17:04:41] -rw-------. 1 boinc boinc  268334316 Apr 21 17:03 HITS.49820375._010230.pool.root.1
[2026-04-21 17:04:41] -rw-r--r--. 1 boinc boinc        489 Apr 21 17:03 boinc_task_state.xml
[2026-04-21 17:04:41] -rw-------. 1 boinc boinc         95 Apr 21 17:03 pilot_heartbeat.json
[2026-04-21 17:04:41] -rw-------. 1 boinc boinc       1030 Apr 21 17:03 memory_monitor_summary.json
[2026-04-21 17:04:41] -rw-------. 1 boinc boinc    1509089 Apr 21 17:03 agis_ddmendpoints.agis.ALL.json
[2026-04-21 17:04:41] -rw-------. 1 boinc boinc     395223 Apr 21 17:03 log.49820375._010230.job.log.tgz.1
[2026-04-21 17:04:41] -rw-------. 1 boinc boinc       6375 Apr 21 17:03 heartbeat_new.json
[2026-04-21 17:04:41] -rw-------. 1 boinc boinc       6266 Apr 21 17:03 heartbeat.json
[2026-04-21 17:04:41] -rw-r--r--. 1 boinc boinc         27 Apr 21 17:04 wrapper_checkpoint.txt
[2026-04-21 17:04:41] -rw-r--r--. 1 boinc boinc       8192 Apr 21 17:04 boinc_mmap_file
[2026-04-21 17:04:41] -rw-------. 1 boinc boinc       4901 Apr 21 17:04 pilotlog.txt
[2026-04-21 17:04:41] -rw-------. 1 boinc boinc    1138454 Apr 21 17:04 log.49820375._010230.job.log.1
[2026-04-21 17:04:41] -rw-------. 1 boinc boinc        357 Apr 21 17:04 output.list
[2026-04-21 17:04:41] -rw-r--r--. 1 boinc boinc        410 Apr 21 17:04 runtime_log
[2026-04-21 17:04:41] -rw-------. 1 boinc boinc    1546240 Apr 21 17:04 result.tar.gz
[2026-04-21 17:04:41] -rw-r--r--. 1 boinc boinc       8844 Apr 21 17:04 runtime_log.err
[2026-04-21 17:04:41] -rw-------. 1 boinc boinc        664 Apr 21 17:04 2c3176e4e397.diag
[2026-04-21 17:04:41] -rw-r--r--. 1 boinc boinc      21034 Apr 21 17:04 stderr.txt
[2026-04-21 17:04:41] HITS file was successfully produced:
[2026-04-21 17:04:41] -rw-------. 1 boinc boinc 268334316 Apr 21 17:03 shared/HITS.pool.root.1
[2026-04-21 17:04:41]  *** Contents of shared directory: ***
[2026-04-21 17:04:41] total 2440928
[2026-04-21 17:04:41] -rw-r--r--. 2 boinc boinc 2228939427 Apr 21 13:38 ATLAS.root_0
[2026-04-21 17:04:41] -rw-r--r--. 2 boinc boinc      15665 Apr 21 13:38 start_atlas.sh
[2026-04-21 17:04:41] -rw-r--r--. 2 boinc boinc     656940 Apr 21 13:38 input.tar.gz
[2026-04-21 17:04:41] -rw-------. 1 boinc boinc  268334316 Apr 21 17:03 HITS.pool.root.1
[2026-04-21 17:04:41] -rw-------. 1 boinc boinc    1546240 Apr 21 17:04 result.tar.gz
17:04:43 (900189): run_atlas exited; CPU time 48181.358846
17:04:43 (900189): called boinc_finish(0)

</stderr_txt>
]]>

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