Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:45:47 (3688675): wrapper (7.7.26015): starting
10:45:47 (3688675): wrapper: running run_atlas (--nthreads 8)
[2026-04-21 10:45:47] Arguments: --nthreads 8
[2026-04-21 10:45:47] Threads: 8
[2026-04-21 10:45:47] Checking for CVMFS
[2026-04-21 10:45:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-21 10:45:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-21 10:45:48] Running cvmfs_config stat atlas.cern.ch
[2026-04-21 10:45:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-21 10:45:50] 2.13.3.0 11793 240428 620288 158693 2 385 22437217 32935936 26263 16776704 0 932149972 99.584 1109571219 33618 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-21 10:45:50] CVMFS is ok
[2026-04-21 10:45:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-21 10:45:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-21 10:45:50] Further information can be found at the LHC@home message board.
[2026-04-21 10:45:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-21 10:45:50] Checking for apptainer binary...
[2026-04-21 10:45:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-21 10:45:50] Running /usr/bin/apptainer --version
[2026-04-21 10:45:50] apptainer version 1.4.5-2.el9
[2026-04-21 10:45:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-21 10:45:52] c6-2-11-2.aglt2.org
[2026-04-21 10:45:52] apptainer works
[2026-04-21 10:45:52] Set ATHENA_PROC_NUMBER=8
[2026-04-21 10:45:52] Set ATHENA_CORE_NUMBER=8
[2026-04-21 10:45:52] Starting ATLAS job with PandaID=7105079280
[2026-04-21 10:45:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-21 18:18:02]  *** The last 200 lines of the pilot log: ***
[2026-04-21 18:18:02] 2026-04-21 22:17:04,100 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-21 18:18:02] 2026-04-21 22:17:04,100 | INFO     | log transfer has been attempted: DONE
[2026-04-21 18:18:02] 2026-04-21 22:17:04,100 | INFO     | job 7105079280 has finished - writing final server update
[2026-04-21 18:18:02] 2026-04-21 22:17:04,101 | INFO     | total number of processed events: 400 (read)
[2026-04-21 18:18:02] 2026-04-21 22:17:04,174 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-7105079280/memory_monitor_summary.json (trf name=prmon)
[2026-04-21 18:18:02] 2026-04-21 22:17:04,175 | INFO     | extracted standard info from prmon json
[2026-04-21 18:18:02] 2026-04-21 22:17:04,175 | INFO     | extracted standard memory fields from prmon json
[2026-04-21 18:18:02] 2026-04-21 22:17:04,175 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-21 18:18:02] 2026-04-21 22:17:04,175 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-21 18:18:02] 2026-04-21 22:17:04,212 | INFO     | fitting pss+swap vs Time
[2026-04-21 18:18:02] 2026-04-21 22:17:04,213 | INFO     | sum of square deviations: 26595951970.426365
[2026-04-21 18:18:02] 2026-04-21 22:17:04,260 | INFO     | sum of deviations: 173163143000.2199
[2026-04-21 18:18:02] 2026-04-21 22:17:04,261 | INFO     | mean x (centered): 0.0
[2026-04-21 18:18:02] 2026-04-21 22:17:04,261 | INFO     | mean y: 2526326.4943310656
[2026-04-21 18:18:02] 2026-04-21 22:17:04,261 | INFO     | intersect: 2526326.4943310656
[2026-04-21 18:18:02] 2026-04-21 22:17:04,262 | INFO     | chi2: 4.8364688370145945
[2026-04-21 18:18:02] 2026-04-21 22:17:04,262 | INFO     | sum of square deviations: 25701629750.00685
[2026-04-21 18:18:02] 2026-04-21 22:17:04,306 | INFO     | sum of deviations: 227854289068.91275
[2026-04-21 18:18:02] 2026-04-21 22:17:04,306 | INFO     | mean x (centered): 0.0
[2026-04-21 18:18:02] 2026-04-21 22:17:04,306 | INFO     | mean y: 2535585.9770642202
[2026-04-21 18:18:02] 2026-04-21 22:17:04,306 | INFO     | intersect: 2535585.9770642202
[2026-04-21 18:18:02] 2026-04-21 22:17:04,307 | INFO     | chi2: 3.4675519669241237
[2026-04-21 18:18:02] 2026-04-21 22:17:04,307 | INFO     | current chi2=3.4675519669241237 (change=28.30405645569013 %)
[2026-04-21 18:18:02] 2026-04-21 22:17:04,308 | INFO     | sum of square deviations: 24827560505.164764
[2026-04-21 18:18:02] 2026-04-21 22:17:04,319 | INFO     | sum of deviations: 225112862715.436
[2026-04-21 18:18:02] 2026-04-21 22:17:04,319 | INFO     | mean x (centered): 0.0
[2026-04-21 18:18:02] 2026-04-21 22:17:04,319 | INFO     | mean y: 2535107.6473317863
[2026-04-21 18:18:02] 2026-04-21 22:17:04,319 | INFO     | intersect: 2535107.6473317863
[2026-04-21 18:18:02] 2026-04-21 22:17:04,347 | INFO     | chi2: 3.4671643496358375
[2026-04-21 18:18:02] 2026-04-21 22:17:04,348 | INFO     | current chi2=3.4671643496358375 (change=0.011178413243219932 %)
[2026-04-21 18:18:02] 2026-04-21 22:17:04,348 | INFO     | right removable region: 430
[2026-04-21 18:18:02] 2026-04-21 22:17:04,348 | INFO     | sum of square deviations: 25701552280.00686
[2026-04-21 18:18:02] 2026-04-21 22:17:04,391 | INFO     | sum of deviations: 43588497489.20401
[2026-04-21 18:18:02] 2026-04-21 22:17:04,391 | INFO     | mean x (centered): 0.0
[2026-04-21 18:18:02] 2026-04-21 22:17:04,391 | INFO     | mean y: 2548385.4747706424
[2026-04-21 18:18:02] 2026-04-21 22:17:04,391 | INFO     | intersect: 2548385.4747706424
[2026-04-21 18:18:02] 2026-04-21 22:17:04,392 | INFO     | chi2: 1.7062094810294495
[2026-04-21 18:18:02] 2026-04-21 22:17:04,392 | INFO     | current chi2=1.7062094810294495 (change=64.72199990266782 %)
[2026-04-21 18:18:02] 2026-04-21 22:17:04,393 | INFO     | sum of square deviations: 24827432039.577686
[2026-04-21 18:18:02] 2026-04-21 22:17:04,455 | INFO     | sum of deviations: 7392877769.733204
[2026-04-21 18:18:02] 2026-04-21 22:17:04,455 | INFO     | mean x (centered): 0.0
[2026-04-21 18:18:02] 2026-04-21 22:17:04,456 | INFO     | mean y: 2554689.8839907194
[2026-04-21 18:18:02] 2026-04-21 22:17:04,456 | INFO     | intersect: 2554689.8839907194
[2026-04-21 18:18:02] 2026-04-21 22:17:04,456 | INFO     | chi2: 1.4769001804655304
[2026-04-21 18:18:02] 2026-04-21 22:17:04,456 | INFO     | current chi2=1.4769001804655304 (change=13.439692084325086 %)
[2026-04-21 18:18:02] 2026-04-21 22:17:04,456 | INFO     | left removable region: 10
[2026-04-21 18:18:02] 2026-04-21 22:17:04,457 | INFO     | sum of square deviations: 22974723933.79768
[2026-04-21 18:18:02] 2026-04-21 22:17:04,502 | INFO     | sum of deviations: 61754491770.65478
[2026-04-21 18:18:02] 2026-04-21 22:17:04,502 | INFO     | mean x (centered): 0.0
[2026-04-21 18:18:02] 2026-04-21 22:17:04,503 | INFO     | mean y: 2564323.254761905
[2026-04-21 18:18:02] 2026-04-21 22:17:04,503 | INFO     | intersect: 2564323.254761905
[2026-04-21 18:18:02] 2026-04-21 22:17:04,503 | INFO     | chi2: 0.07611486775075157
[2026-04-21 18:18:02] 2026-04-21 22:17:04,503 | INFO     | current memory leak: 2.69 B/s (using 420 data points, chi2=0.08)
[2026-04-21 18:18:02] 2026-04-21 22:17:04,505 | INFO     | could have reported an average CPU frequency of 2631 MHz (18 samples)
[2026-04-21 18:18:02] 2026-04-21 22:17:04,505 | INFO     | ..............................
[2026-04-21 18:18:02] 2026-04-21 22:17:04,505 | INFO     | . Timing measurements:
[2026-04-21 18:18:02] 2026-04-21 22:17:04,506 | INFO     | . get job = 0 s
[2026-04-21 18:18:02] 2026-04-21 22:17:04,506 | INFO     | . initial setup = 36 s
[2026-04-21 18:18:02] 2026-04-21 22:17:04,506 | INFO     | . payload setup = 72 s
[2026-04-21 18:18:02] 2026-04-21 22:17:04,506 | INFO     | . stage-in = 0 s
[2026-04-21 18:18:02] 2026-04-21 22:17:04,506 | INFO     | . payload execution = 26868 s
[2026-04-21 18:18:02] 2026-04-21 22:17:04,506 | INFO     | . stage-out = 5 s
[2026-04-21 18:18:02] 2026-04-21 22:17:04,506 | INFO     | . log creation = 0 s
[2026-04-21 18:18:02] 2026-04-21 22:17:04,523 | INFO     | ..............................
[2026-04-21 18:18:02] 2026-04-21 22:17:05,574 | INFO     | 
[2026-04-21 18:18:02] 2026-04-21 22:17:05,575 | INFO     | job summary report
[2026-04-21 18:18:02] 2026-04-21 22:17:05,575 | INFO     | --------------------------------------------------
[2026-04-21 18:18:02] 2026-04-21 22:17:05,575 | INFO     | PanDA job id: 7105079280
[2026-04-21 18:18:02] 2026-04-21 22:17:05,575 | INFO     | task id: 49820244
[2026-04-21 18:18:02] 2026-04-21 22:17:05,575 | INFO     | errors: (none)
[2026-04-21 18:18:02] 2026-04-21 22:17:05,575 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-21 18:18:02] 2026-04-21 22:17:05,575 | INFO     | pilot state: finished 
[2026-04-21 18:18:02] 2026-04-21 22:17:05,575 | INFO     | transexitcode: 0
[2026-04-21 18:18:02] 2026-04-21 22:17:05,575 | INFO     | exeerrorcode: 0
[2026-04-21 18:18:02] 2026-04-21 22:17:05,575 | INFO     | exeerrordiag: 
[2026-04-21 18:18:02] 2026-04-21 22:17:05,575 | INFO     | exitcode: 0
[2026-04-21 18:18:02] 2026-04-21 22:17:05,575 | INFO     | exitmsg: OK
[2026-04-21 18:18:02] 2026-04-21 22:17:05,575 | INFO     | cpuconsumptiontime: 81532 s
[2026-04-21 18:18:02] 2026-04-21 22:17:05,576 | INFO     | nevents: 400
[2026-04-21 18:18:02] 2026-04-21 22:17:05,576 | INFO     | neventsw: 0
[2026-04-21 18:18:02] 2026-04-21 22:17:05,576 | INFO     | pid: 3702456
[2026-04-21 18:18:02] 2026-04-21 22:17:05,576 | INFO     | pgrp: 3702456
[2026-04-21 18:18:02] 2026-04-21 22:17:05,576 | INFO     | corecount: 8
[2026-04-21 18:18:02] 2026-04-21 22:17:05,576 | INFO     | event service: False
[2026-04-21 18:18:02] 2026-04-21 22:17:05,576 | INFO     | sizes: {0: 2274522, 1: 2274606, 2: 2276407, 13: 2276435, 26944: 2313127, 26945: 2313126, 26951: 2322308, 26953: 2322364, 26955: 2322558}
[2026-04-21 18:18:02] 2026-04-21 22:17:05,576 | INFO     | --------------------------------------------------
[2026-04-21 18:18:02] 2026-04-21 22:17:05,576 | INFO     | 
[2026-04-21 18:18:02] 2026-04-21 22:17:05,611 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-04-21 18:18:02] 2026-04-21 22:17:05,767 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-21 18:18:02] 2026-04-21 22:17:05,775 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-21 18:18:02] 2026-04-21 22:17:05,775 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-21 18:18:02] 2026-04-21 22:17:05,775 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-21 18:18:02] 2026-04-21 22:17:05,776 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-21 18:18:02] 2026-04-21 22:17:05,776 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-21 18:18:02] 2026-04-21 22:17:05,776 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-21 18:18:02] 2026-04-21 22:17:05,776 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-21 18:18:02] 2026-04-21 22:17:05,776 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-21 18:18:02] 2026-04-21 22:17:05,776 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-21 18:18:02] 2026-04-21 22:17:05,776 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-21 18:18:02] 2026-04-21 22:17:05,776 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-21 18:18:02] 2026-04-21 22:17:05,776 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-21 18:18:02] 2026-04-21 22:17:05,776 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-21 18:18:02] 2026-04-21 22:17:05,776 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-21 18:18:02] 2026-04-21 22:17:05,776 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-21 18:18:02] 2026-04-21 22:17:05,776 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-21 18:18:02] 2026-04-21 22:17:05,777 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-21 18:18:02] 2026-04-21 22:17:05,777 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-21 18:18:02] 2026-04-21 22:17:05,777 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-21 18:18:02] 2026-04-21 22:17:05,777 | INFO     | job 7105079280 has completed (purged errors)
[2026-04-21 18:18:02] 2026-04-21 22:17:05,777 | INFO     | overall cleanup function is called
[2026-04-21 18:18:02] 2026-04-21 22:17:06,815 | INFO     | --- collectZombieJob: --- 10, [3702456]
[2026-04-21 18:18:02] 2026-04-21 22:17:06,816 | INFO     | zombie collector waiting for pid 3702456
[2026-04-21 18:18:02] 2026-04-21 22:17:06,816 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-21 18:18:02] 2026-04-21 22:17:06,816 | INFO     | collected zombie processes
[2026-04-21 18:18:02] 2026-04-21 22:17:06,816 | INFO     | will attempt to kill all subprocesses of pid=3702456
[2026-04-21 18:18:02] 2026-04-21 22:17:07,081 | INFO     | PID=3694509 has CPU usage=16.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-21 18:18:02] 2026-04-21 22:17:07,081 | INFO     | .. there are 25 such processes running
[2026-04-21 18:18:02] 2026-04-21 22:17:07,786 | INFO     | process IDs to be killed: [3702456] (in reverse order)
[2026-04-21 18:18:02] 2026-04-21 22:17:08,215 | WARNING  | found no corresponding commands to process id(s)
[2026-04-21 18:18:02] 2026-04-21 22:17:08,215 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-21 18:18:02] 2026-04-21 22:17:08,324 | INFO     | did not find any defunct processes belonging to 3702456
[2026-04-21 18:18:02] 2026-04-21 22:17:08,427 | INFO     | did not find any defunct processes belonging to 3702456
[2026-04-21 18:18:02] 2026-04-21 22:17:08,428 | INFO     | Ready for new job
[2026-04-21 18:18:02] 2026-04-21 22:17:08,434 | INFO     | **************************************
[2026-04-21 18:18:02] 2026-04-21 22:17:08,434 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-21 18:18:02] 2026-04-21 22:17:08,434 | INFO     | **************************************
[2026-04-21 18:18:02] 2026-04-21 22:17:08,434 | INFO     | 
[2026-04-21 18:18:02] 2026-04-21 22:17:08,443 | INFO     | architecture information:
[2026-04-21 18:18:02] 2026-04-21 22:17:08,444 | INFO     | executing command: cat /etc/os-release
[2026-04-21 18:18:02] 2026-04-21 22:17:08,541 | INFO     | cat /etc/os-release:
[2026-04-21 18:18:02] NAME="CentOS Linux"
[2026-04-21 18:18:02] VERSION="7 (Core)"
[2026-04-21 18:18:02] ID="centos"
[2026-04-21 18:18:02] ID_LIKE="rhel fedora"
[2026-04-21 18:18:02] VERSION_ID="7"
[2026-04-21 18:18:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-21 18:18:02] ANSI_COLOR="0;31"
[2026-04-21 18:18:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-21 18:18:02] HOME_URL="https://www.centos.org/"
[2026-04-21 18:18:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-21 18:18:02] 
[2026-04-21 18:18:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-21 18:18:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-21 18:18:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-21 18:18:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-21 18:18:02] 
[2026-04-21 18:18:02] 2026-04-21 22:17:08,541 | INFO     | **************************************
[2026-04-21 18:18:02] 2026-04-21 22:17:09,045 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-04-21 18:18:02] 2026-04-21 22:17:09,104 | INFO     | sufficient remaining disk space (69081235456 B)
[2026-04-21 18:18:02] 2026-04-21 22:17:09,105 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-21 18:18:02] 2026-04-21 22:17:09,105 | INFO     | current server update state: UPDATING_FINAL
[2026-04-21 18:18:02] 2026-04-21 22:17:09,105 | INFO     | update_server=False
[2026-04-21 18:18:02] 2026-04-21 22:17:09,105 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-21 18:18:02] 2026-04-21 22:17:09,107 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-21 18:18:02] 2026-04-21 22:17:09,107 | INFO     | aborting loop
[2026-04-21 18:18:02] 2026-04-21 22:17:09,716 | INFO     | all data control threads have been joined
[2026-04-21 18:18:02] 2026-04-21 22:17:10,111 | INFO     | [job] retrieve thread has finished
[2026-04-21 18:18:02] 2026-04-21 22:17:10,113 | INFO     | [job] job monitor thread has finished
[2026-04-21 18:18:02] 2026-04-21 22:17:10,126 | INFO     | [payload] execute_payloads thread has finished
[2026-04-21 18:18:02] 2026-04-21 22:17:10,145 | INFO     | [job] validate thread has finished
[2026-04-21 18:18:02] 2026-04-21 22:17:10,146 | INFO     | [job] create_data_payload thread has finished
[2026-04-21 18:18:02] 2026-04-21 22:17:10,221 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-21 18:18:02] 2026-04-21 22:17:10,344 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-21 18:18:02] 2026-04-21 22:17:10,432 | INFO     | [data] copytool_in thread has finished
[2026-04-21 18:18:02] 2026-04-21 22:17:10,465 | INFO     | [payload] validate_post thread has finished
[2026-04-21 18:18:02] 2026-04-21 22:17:10,509 | INFO     | all job control threads have been joined
[2026-04-21 18:18:02] 2026-04-21 22:17:10,529 | INFO     | all payload control threads have been joined
[2026-04-21 18:18:02] 2026-04-21 22:17:10,592 | INFO     | [payload] validate_pre thread has finished
[2026-04-21 18:18:02] 2026-04-21 22:17:10,658 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-21 18:18:02] 2026-04-21 22:17:10,722 | INFO     | [data] control thread has finished
[2026-04-21 18:18:02] 2026-04-21 22:17:10,963 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-21 18:18:02] 2026-04-21 22:17:11,429 | INFO     | [payload] failed_post thread has finished
[2026-04-21 18:18:02] 2026-04-21 22:17:11,516 | INFO     | [job] control thread has finished
[2026-04-21 18:18:02] 2026-04-21 22:17:11,535 | INFO     | [payload] control thread has finished
[2026-04-21 18:18:02] 2026-04-21 22:17:11,666 | INFO     | [job] queue monitor thread has finished
[2026-04-21 18:18:02] 2026-04-21 22:17:12,242 | INFO     | [data] copytool_out thread has finished
[2026-04-21 18:18:02] 2026-04-21 22:17:14,362 | INFO     | [data] queue_monitor thread has finished
[2026-04-21 18:18:02] 2026-04-21 22:17:25,185 | INFO     | [monitor] cgroup control has ended
[2026-04-21 18:18:02] 2026-04-21 22:17:25,273 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140322041616192)>', '<ExcThread(monitor, started 140321245607680)>']
[2026-04-21 18:18:02] 2026-04-21 22:17:30,299 | INFO     | all workflow threads have been joined
[2026-04-21 18:18:02] 2026-04-21 22:17:30,299 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-21 18:18:02] 2026-04-21 22:17:30,300 | INFO     | traces error code: 0
[2026-04-21 18:18:02] 2026-04-21 22:17:30,300 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-21 18:18:02] 2026-04-21 22:17:40,940 | INFO     | PID=3694509 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-21 18:18:02] 2026-04-21 22:17:40,940 | INFO     | .. there are 25 such processes running
[2026-04-21 18:18:02] 2026-04-21 22:17:40,947 | INFO     | found 0 job(s) in 20 queues
[2026-04-21 18:18:02] 2026-04-21 22:17:40,948 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-21 18:18:02] 2026-04-21 22:17:40,948 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-21 18:18:02] 2026-04-21 22:17:40,948 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-21 18:18:02] 2026-04-21 22:17:40,948 | INFO     | [monitor] control thread has ended
[2026-04-21 18:18:02] 2026-04-21 22:17:41,327 [wrapper] ==== pilot stdout END ====
[2026-04-21 18:18:02] 2026-04-21 22:17:41,344 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-21 18:18:02] 2026-04-21 22:17:41,355 [wrapper] pilotpid: 3694509
[2026-04-21 18:18:02] 2026-04-21 22:17:41,373 [wrapper] Pilot exit status: 0
[2026-04-21 18:18:02] 2026-04-21 22:17:41,459 [wrapper] pandaids: 7105079280
[2026-04-21 18:18:02] 2026-04-21 22:17:41,791 [wrapper] cleanup supervisor_pilot  794622 3694510
[2026-04-21 18:18:02] 2026-04-21 22:17:41,803 [wrapper] Test setup, not cleaning
[2026-04-21 18:18:02] 2026-04-21 22:17:41,819 [wrapper] apfmon messages muted
[2026-04-21 18:18:02] 2026-04-21 22:17:41,842 [wrapper] ==== wrapper stdout END ====
[2026-04-21 18:18:02] 2026-04-21 22:17:41,872 [wrapper] ==== wrapper stderr END ====
[2026-04-21 18:18:02]  *** Error codes and diagnostics ***
[2026-04-21 18:18:02]     "exeErrorCode": 0,
[2026-04-21 18:18:02]     "pilotErrorCode": 0,
[2026-04-21 18:18:02]  *** Listing of results directory ***
[2026-04-21 18:18:02] total 2473064
[2026-04-21 18:18:02] -rw-r--r--. 1 boincer umatlas     644190 Apr 21 03:41 pilot3.tar.gz
[2026-04-21 18:18:02] -rwx------. 1 boincer umatlas      36322 Apr 21 03:42 runpilot2-wrapper.sh
[2026-04-21 18:18:02] -rw-r--r--. 1 boincer umatlas       5094 Apr 21 05:22 queuedata.json
[2026-04-21 18:18:02] -rw-r--r--. 1 boincer umatlas        100 Apr 21 10:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-21 18:18:02] -rwxr-xr-x. 1 boincer umatlas       7986 Apr 21 10:45 run_atlas
[2026-04-21 18:18:02] -rw-r--r--. 1 boincer umatlas        105 Apr 21 10:45 job.xml
[2026-04-21 18:18:02] -rw-r--r--. 2 boincer umatlas 2247877740 Apr 21 10:45 EVNT.49820242._000024.pool.root.1
[2026-04-21 18:18:02] drwxrwx--x. 2 boincer umatlas       4096 Apr 21 10:45 shared
[2026-04-21 18:18:02] -rw-r--r--. 2 boincer umatlas     656925 Apr 21 10:45 input.tar.gz
[2026-04-21 18:18:02] -rw-r--r--. 2 boincer umatlas      15665 Apr 21 10:45 start_atlas.sh
[2026-04-21 18:18:02] -rw-r--r--. 1 boincer umatlas          0 Apr 21 10:45 boinc_lockfile
[2026-04-21 18:18:02] -rw-r--r--. 1 boincer umatlas       2551 Apr 21 10:45 pandaJob.out
[2026-04-21 18:18:02] -rw-------. 1 boincer umatlas         57 Apr 21 10:45 setup.sh.local
[2026-04-21 18:18:02] -rw-------. 1 boincer umatlas     994513 Apr 21 10:47 agis_schedconf.cvmfs.json
[2026-04-21 18:18:02] -rw-------. 1 boincer umatlas        442 Apr 21 10:47 workernode_map.json
[2026-04-21 18:18:02] drwx------. 5 boincer umatlas       4096 Apr 21 10:47 pilot3
[2026-04-21 18:18:02] -rw-r--r--. 1 boincer umatlas       6793 Apr 21 18:12 init_data.xml
[2026-04-21 18:18:02] -rw-------. 1 boincer umatlas  274743675 Apr 21 18:15 HITS.49820244._013023.pool.root.1
[2026-04-21 18:18:02] -rw-r--r--. 1 boincer umatlas        489 Apr 21 18:15 boinc_task_state.xml
[2026-04-21 18:18:02] -rw-------. 1 boincer umatlas       1059 Apr 21 18:16 memory_monitor_summary.json
[2026-04-21 18:18:02] -rw-------. 1 boincer umatlas    1509089 Apr 21 18:16 agis_ddmendpoints.agis.ALL.json
[2026-04-21 18:18:02] -rw-------. 1 boincer umatlas     640245 Apr 21 18:17 log.49820244._013023.job.log.tgz.1
[2026-04-21 18:18:02] -rw-------. 1 boincer umatlas       6441 Apr 21 18:17 heartbeat_new.json
[2026-04-21 18:18:02] -rw-------. 1 boincer umatlas       6332 Apr 21 18:17 heartbeat.json
[2026-04-21 18:18:02] -rw-------. 1 boincer umatlas        823 Apr 21 18:17 pilotlog.txt
[2026-04-21 18:18:02] -rw-------. 1 boincer umatlas         95 Apr 21 18:17 pilot_heartbeat.json
[2026-04-21 18:18:02] -rw-------. 1 boincer umatlas    2231705 Apr 21 18:17 log.49820244._013023.job.log.1
[2026-04-21 18:18:02] -rw-------. 1 boincer umatlas        357 Apr 21 18:17 output.list
[2026-04-21 18:18:02] -rw-r--r--. 1 boincer umatlas        410 Apr 21 18:17 runtime_log
[2026-04-21 18:18:02] -rw-------. 1 boincer umatlas    2887680 Apr 21 18:17 result.tar.gz
[2026-04-21 18:18:02] -rw-r--r--. 1 boincer umatlas       8969 Apr 21 18:17 runtime_log.err
[2026-04-21 18:18:02] -rw-------. 1 boincer umatlas        664 Apr 21 18:17 2a68f4cc46dc.diag
[2026-04-21 18:18:02] -rw-r--r--. 1 boincer umatlas         28 Apr 21 18:17 wrapper_checkpoint.txt
[2026-04-21 18:18:02] -rw-r--r--. 1 boincer umatlas       8192 Apr 21 18:18 boinc_mmap_file
[2026-04-21 18:18:02] -rw-r--r--. 1 boincer umatlas      21165 Apr 21 18:18 stderr.txt
[2026-04-21 18:18:02] HITS file was successfully produced:
[2026-04-21 18:18:02] -rw-------. 1 boincer umatlas 274743675 Apr 21 18:15 shared/HITS.pool.root.1
[2026-04-21 18:18:02]  *** Contents of shared directory: ***
[2026-04-21 18:18:02] total 2466992
[2026-04-21 18:18:02] -rw-r--r--. 2 boincer umatlas 2247877740 Apr 21 10:45 ATLAS.root_0
[2026-04-21 18:18:02] -rw-r--r--. 2 boincer umatlas     656925 Apr 21 10:45 input.tar.gz
[2026-04-21 18:18:02] -rw-r--r--. 2 boincer umatlas      15665 Apr 21 10:45 start_atlas.sh
[2026-04-21 18:18:02] -rw-------. 1 boincer umatlas  274743675 Apr 21 18:15 HITS.pool.root.1
[2026-04-21 18:18:02] -rw-------. 1 boincer umatlas    2887680 Apr 21 18:17 result.tar.gz
18:18:03 (3688675): run_atlas exited; CPU time 82779.867591
18:18:03 (3688675): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN