Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:56:19 (3005166): wrapper (7.7.26015): starting
12:56:19 (3005166): wrapper: running run_atlas (--nthreads 4)
[2026-04-21 12:56:19] Arguments: --nthreads 4
[2026-04-21 12:56:19] Threads: 4
[2026-04-21 12:56:19] Checking for CVMFS
[2026-04-21 12:56:19] No cvmfs_config command found, will try listing directly
[2026-04-21 12:56:19] CVMFS is ok
[2026-04-21 12:56:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-21 12:56:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-21 12:56:20] Further information can be found at the LHC@home message board.
[2026-04-21 12:56:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-21 12:56:20] Checking for apptainer binary...
[2026-04-21 12:56:20] which: no apptainer in ((null))
[2026-04-21 12:56:20] apptainer is not installed, using version from CVMFS
[2026-04-21 12:56:20] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-21 12:56:20] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot48/slots/3/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2026-04-21 12:56:20] apptainer works
[2026-04-21 12:56:20] Set ATHENA_PROC_NUMBER=4
[2026-04-21 12:56:20] Set ATHENA_CORE_NUMBER=4
[2026-04-21 12:56:20] Starting ATLAS job with PandaID=7105079696
[2026-04-21 12:56:20] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot48/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-21 16:04:22]  *** The last 200 lines of the pilot log: ***
[2026-04-21 16:04:22] 2026-04-21 14:03:13,543 | INFO     | extracted standard memory fields from prmon json
[2026-04-21 16:04:22] 2026-04-21 14:03:13,543 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-21 16:04:22] 2026-04-21 14:03:13,543 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-21 16:04:22] 2026-04-21 14:03:13,546 | INFO     | fitting pss+swap vs Time
[2026-04-21 16:04:22] 2026-04-21 14:03:13,547 | INFO     | sum of square deviations: 1931608310.0
[2026-04-21 16:04:22] 2026-04-21 14:03:13,548 | INFO     | sum of deviations: 11143691304.0
[2026-04-21 16:04:22] 2026-04-21 14:03:13,548 | INFO     | mean x (centered): 0.0
[2026-04-21 16:04:22] 2026-04-21 14:03:13,548 | INFO     | mean y: 2336242.3260869565
[2026-04-21 16:04:22] 2026-04-21 14:03:13,548 | INFO     | intersect: 2336242.3260869565
[2026-04-21 16:04:22] 2026-04-21 14:03:13,548 | INFO     | chi2: 1.8936205312007126
[2026-04-21 16:04:22] 2026-04-21 14:03:13,548 | INFO     | sum of square deviations: 1778377530.0
[2026-04-21 16:04:22] 2026-04-21 14:03:13,549 | INFO     | sum of deviations: 22258099619.000004
[2026-04-21 16:04:22] 2026-04-21 14:03:13,549 | INFO     | mean x (centered): 0.0
[2026-04-21 16:04:22] 2026-04-21 14:03:13,549 | INFO     | mean y: 2347048.318435754
[2026-04-21 16:04:22] 2026-04-21 14:03:13,550 | INFO     | intersect: 2347048.318435754
[2026-04-21 16:04:22] 2026-04-21 14:03:13,550 | INFO     | chi2: 1.0955465062614815
[2026-04-21 16:04:22] 2026-04-21 14:03:13,550 | INFO     | current chi2=1.0955465062614815 (change=42.14540409704926 %)
[2026-04-21 16:04:22] 2026-04-21 14:03:13,550 | INFO     | sum of square deviations: 1633472487.5
[2026-04-21 16:04:22] 2026-04-21 14:03:13,551 | INFO     | sum of deviations: 21502786761.0
[2026-04-21 16:04:22] 2026-04-21 14:03:13,551 | INFO     | mean x (centered): 0.0
[2026-04-21 16:04:22] 2026-04-21 14:03:13,551 | INFO     | mean y: 2346253.011494253
[2026-04-21 16:04:22] 2026-04-21 14:03:13,551 | INFO     | intersect: 2346253.011494253
[2026-04-21 16:04:22] 2026-04-21 14:03:13,551 | INFO     | chi2: 1.0960840339636213
[2026-04-21 16:04:22] 2026-04-21 14:03:13,551 | INFO     | current chi2=1.0960840339636213 (change=-0.049064799994120695 %)
[2026-04-21 16:04:22] 2026-04-21 14:03:13,551 | INFO     | right removable region: 173
[2026-04-21 16:04:22] 2026-04-21 14:03:13,552 | INFO     | sum of square deviations: 1778377530.0
[2026-04-21 16:04:22] 2026-04-21 14:03:13,552 | INFO     | sum of deviations: -7179202789.000001
[2026-04-21 16:04:22] 2026-04-21 14:03:13,553 | INFO     | mean x (centered): 0.0
[2026-04-21 16:04:22] 2026-04-21 14:03:13,553 | INFO     | mean y: 2354170.061452514
[2026-04-21 16:04:22] 2026-04-21 14:03:13,553 | INFO     | intersect: 2354170.061452514
[2026-04-21 16:04:22] 2026-04-21 14:03:13,553 | INFO     | chi2: 0.8170013502047803
[2026-04-21 16:04:22] 2026-04-21 14:03:13,553 | INFO     | current chi2=0.8170013502047803 (change=56.855064848355156 %)
[2026-04-21 16:04:22] 2026-04-21 14:03:13,553 | INFO     | sum of square deviations: 1633472487.5
[2026-04-21 16:04:22] 2026-04-21 14:03:13,554 | INFO     | sum of deviations: -6768832029.5
[2026-04-21 16:04:22] 2026-04-21 14:03:13,554 | INFO     | mean x (centered): 0.0
[2026-04-21 16:04:22] 2026-04-21 14:03:13,554 | INFO     | mean y: 2353741.33908046
[2026-04-21 16:04:22] 2026-04-21 14:03:13,554 | INFO     | intersect: 2353741.33908046
[2026-04-21 16:04:22] 2026-04-21 14:03:13,554 | INFO     | chi2: 0.8169231752531082
[2026-04-21 16:04:22] 2026-04-21 14:03:13,555 | INFO     | current chi2=0.8169231752531082 (change=0.009568521723062814 %)
[2026-04-21 16:04:22] 2026-04-21 14:03:13,555 | INFO     | left removable region: 10
[2026-04-21 16:04:22] 2026-04-21 14:03:13,555 | INFO     | sum of square deviations: 1342841922.0
[2026-04-21 16:04:22] 2026-04-21 14:03:13,556 | INFO     | sum of deviations: 3936960923.0000005
[2026-04-21 16:04:22] 2026-04-21 14:03:13,556 | INFO     | mean x (centered): 0.0
[2026-04-21 16:04:22] 2026-04-21 14:03:13,556 | INFO     | mean y: 2365367.2515337425
[2026-04-21 16:04:22] 2026-04-21 14:03:13,556 | INFO     | intersect: 2365367.2515337425
[2026-04-21 16:04:22] 2026-04-21 14:03:13,556 | INFO     | chi2: 0.0004158968061042473
[2026-04-21 16:04:22] 2026-04-21 14:03:13,556 | INFO     | current memory leak: 2.93 B/s (using 163 data points, chi2=0.00)
[2026-04-21 16:04:22] 2026-04-21 14:03:13,556 | INFO     | could have reported an average CPU frequency of 2769 MHz (10 samples)
[2026-04-21 16:04:22] 2026-04-21 14:03:13,556 | INFO     | ..............................
[2026-04-21 16:04:22] 2026-04-21 14:03:13,557 | INFO     | . Timing measurements:
[2026-04-21 16:04:22] 2026-04-21 14:03:13,557 | INFO     | . get job = 0 s
[2026-04-21 16:04:22] 2026-04-21 14:03:13,557 | INFO     | . initial setup = 5 s
[2026-04-21 16:04:22] 2026-04-21 14:03:13,557 | INFO     | . payload setup = 10 s
[2026-04-21 16:04:22] 2026-04-21 14:03:13,557 | INFO     | . stage-in = 0 s
[2026-04-21 16:04:22] 2026-04-21 14:03:13,557 | INFO     | . payload execution = 11172 s
[2026-04-21 16:04:22] 2026-04-21 14:03:13,557 | INFO     | . stage-out = 0 s
[2026-04-21 16:04:22] 2026-04-21 14:03:13,557 | INFO     | . log creation = 0 s
[2026-04-21 16:04:22] 2026-04-21 14:03:13,557 | INFO     | ..............................
[2026-04-21 16:04:22] 2026-04-21 14:03:13,641 | INFO     | 
[2026-04-21 16:04:22] 2026-04-21 14:03:13,642 | INFO     | job summary report
[2026-04-21 16:04:22] 2026-04-21 14:03:13,642 | INFO     | --------------------------------------------------
[2026-04-21 16:04:22] 2026-04-21 14:03:13,642 | INFO     | PanDA job id: 7105079696
[2026-04-21 16:04:22] 2026-04-21 14:03:13,642 | INFO     | task id: 49820244
[2026-04-21 16:04:22] 2026-04-21 14:03:13,642 | INFO     | errors: (none)
[2026-04-21 16:04:22] 2026-04-21 14:03:13,642 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-21 16:04:22] 2026-04-21 14:03:13,642 | INFO     | pilot state: finished 
[2026-04-21 16:04:22] 2026-04-21 14:03:13,642 | INFO     | transexitcode: 0
[2026-04-21 16:04:22] 2026-04-21 14:03:13,642 | INFO     | exeerrorcode: 0
[2026-04-21 16:04:22] 2026-04-21 14:03:13,642 | INFO     | exeerrordiag: 
[2026-04-21 16:04:22] 2026-04-21 14:03:13,643 | INFO     | exitcode: 0
[2026-04-21 16:04:22] 2026-04-21 14:03:13,643 | INFO     | exitmsg: OK
[2026-04-21 16:04:22] 2026-04-21 14:03:13,643 | INFO     | cpuconsumptiontime: 43406 s
[2026-04-21 16:04:22] 2026-04-21 14:03:13,643 | INFO     | nevents: 400
[2026-04-21 16:04:22] 2026-04-21 14:03:13,643 | INFO     | neventsw: 0
[2026-04-21 16:04:22] 2026-04-21 14:03:13,643 | INFO     | pid: 3014536
[2026-04-21 16:04:22] 2026-04-21 14:03:13,643 | INFO     | pgrp: 3014536
[2026-04-21 16:04:22] 2026-04-21 14:03:13,643 | INFO     | corecount: 4
[2026-04-21 16:04:22] 2026-04-21 14:03:13,643 | INFO     | event service: False
[2026-04-21 16:04:22] 2026-04-21 14:03:13,643 | INFO     | sizes: {0: 2281567, 1: 2283396, 11: 2283396, 11186: 2312842, 11187: 2314939, 11188: 2315261}
[2026-04-21 16:04:22] 2026-04-21 14:03:13,643 | INFO     | --------------------------------------------------
[2026-04-21 16:04:22] 2026-04-21 14:03:13,643 | INFO     | 
[2026-04-21 16:04:22] 2026-04-21 14:03:13,644 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot48/slots/3
[2026-04-21 16:04:22] 2026-04-21 14:03:13,669 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-21 16:04:22] 2026-04-21 14:03:13,669 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-21 16:04:22] 2026-04-21 14:03:13,669 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-21 16:04:22] 2026-04-21 14:03:13,669 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-21 16:04:22] 2026-04-21 14:03:13,669 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-21 16:04:22] 2026-04-21 14:03:13,669 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-21 16:04:22] 2026-04-21 14:03:13,670 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-21 16:04:22] 2026-04-21 14:03:13,670 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-21 16:04:22] 2026-04-21 14:03:13,670 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-21 16:04:22] 2026-04-21 14:03:13,670 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-21 16:04:22] 2026-04-21 14:03:13,670 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-21 16:04:22] 2026-04-21 14:03:13,670 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-21 16:04:22] 2026-04-21 14:03:13,670 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-21 16:04:22] 2026-04-21 14:03:13,671 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-21 16:04:22] 2026-04-21 14:03:13,671 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-21 16:04:22] 2026-04-21 14:03:13,671 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-21 16:04:22] 2026-04-21 14:03:13,671 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-21 16:04:22] 2026-04-21 14:03:13,671 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-21 16:04:22] 2026-04-21 14:03:13,671 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-21 16:04:22] 2026-04-21 14:03:13,671 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-21 16:04:22] 2026-04-21 14:03:13,671 | INFO     | job 7105079696 has completed (purged errors)
[2026-04-21 16:04:22] 2026-04-21 14:03:13,671 | INFO     | overall cleanup function is called
[2026-04-21 16:04:22] 2026-04-21 14:03:14,473 | INFO     | PID=3009225 has CPU usage=17.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-21 16:04:22] 2026-04-21 14:03:14,473 | INFO     | .. there are 9 such processes running
[2026-04-21 16:04:22] 2026-04-21 14:03:14,684 | INFO     | --- collectZombieJob: --- 10, [3014536]
[2026-04-21 16:04:22] 2026-04-21 14:03:14,684 | INFO     | zombie collector waiting for pid 3014536
[2026-04-21 16:04:22] 2026-04-21 14:03:14,684 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-21 16:04:22] 2026-04-21 14:03:14,685 | INFO     | collected zombie processes
[2026-04-21 16:04:22] 2026-04-21 14:03:14,685 | INFO     | will attempt to kill all subprocesses of pid=3014536
[2026-04-21 16:04:22] 2026-04-21 14:03:15,336 | INFO     | process IDs to be killed: [3014536] (in reverse order)
[2026-04-21 16:04:22] 2026-04-21 14:03:15,503 | WARNING  | found no corresponding commands to process id(s)
[2026-04-21 16:04:22] 2026-04-21 14:03:15,504 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-21 16:04:22] 2026-04-21 14:03:15,529 | INFO     | did not find any defunct processes belonging to 3014536
[2026-04-21 16:04:22] 2026-04-21 14:03:15,553 | INFO     | did not find any defunct processes belonging to 3014536
[2026-04-21 16:04:22] 2026-04-21 14:03:15,554 | INFO     | Ready for new job
[2026-04-21 16:04:22] 2026-04-21 14:03:15,556 | INFO     | **************************************
[2026-04-21 16:04:22] 2026-04-21 14:03:15,556 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-21 16:04:22] 2026-04-21 14:03:15,556 | INFO     | **************************************
[2026-04-21 16:04:22] 2026-04-21 14:03:15,556 | INFO     | 
[2026-04-21 16:04:22] 2026-04-21 14:03:15,564 | INFO     | architecture information:
[2026-04-21 16:04:22] 2026-04-21 14:03:15,564 | INFO     | executing command: cat /etc/os-release
[2026-04-21 16:04:22] 2026-04-21 14:03:15,583 | INFO     | cat /etc/os-release:
[2026-04-21 16:04:22] NAME="CentOS Linux"
[2026-04-21 16:04:22] VERSION="7 (Core)"
[2026-04-21 16:04:22] ID="centos"
[2026-04-21 16:04:22] ID_LIKE="rhel fedora"
[2026-04-21 16:04:22] VERSION_ID="7"
[2026-04-21 16:04:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-21 16:04:22] ANSI_COLOR="0;31"
[2026-04-21 16:04:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-21 16:04:22] HOME_URL="https://www.centos.org/"
[2026-04-21 16:04:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-21 16:04:22] 
[2026-04-21 16:04:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-21 16:04:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-21 16:04:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-21 16:04:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-21 16:04:22] 
[2026-04-21 16:04:22] 2026-04-21 14:03:15,584 | INFO     | **************************************
[2026-04-21 16:04:22] 2026-04-21 14:03:16,087 | INFO     | executing command: df -mP /var/lib/boinc/var/slot48/slots/3
[2026-04-21 16:04:22] 2026-04-21 14:03:16,107 | INFO     | sufficient remaining disk space (203318886400 B)
[2026-04-21 16:04:22] 2026-04-21 14:03:16,108 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-21 16:04:22] 2026-04-21 14:03:16,108 | INFO     | current server update state: UPDATING_FINAL
[2026-04-21 16:04:22] 2026-04-21 14:03:16,108 | INFO     | update_server=False
[2026-04-21 16:04:22] 2026-04-21 14:03:16,108 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-21 16:04:22] 2026-04-21 14:03:16,310 | INFO     | all data control threads have been joined
[2026-04-21 16:04:22] 2026-04-21 14:03:16,404 | INFO     | all payload control threads have been joined
[2026-04-21 16:04:22] 2026-04-21 14:03:16,431 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-21 16:04:22] 2026-04-21 14:03:17,113 | INFO     | [job] retrieve thread has finished
[2026-04-21 16:04:22] 2026-04-21 14:03:17,122 | INFO     | [payload] validate_pre thread has finished
[2026-04-21 16:04:22] 2026-04-21 14:03:17,140 | INFO     | [job] create_data_payload thread has finished
[2026-04-21 16:04:22] 2026-04-21 14:03:17,226 | INFO     | [payload] failed_post thread has finished
[2026-04-21 16:04:22] 2026-04-21 14:03:17,315 | INFO     | [data] control thread has finished
[2026-04-21 16:04:22] 2026-04-21 14:03:17,410 | INFO     | [payload] control thread has finished
[2026-04-21 16:04:22] 2026-04-21 14:03:17,454 | INFO     | all job control threads have been joined
[2026-04-21 16:04:22] 2026-04-21 14:03:17,548 | INFO     | [data] copytool_in thread has finished
[2026-04-21 16:04:22] 2026-04-21 14:03:17,989 | INFO     | [payload] execute_payloads thread has finished
[2026-04-21 16:04:22] 2026-04-21 14:03:18,325 | INFO     | [payload] validate_post thread has finished
[2026-04-21 16:04:22] 2026-04-21 14:03:18,437 | INFO     | [data] copytool_out thread has finished
[2026-04-21 16:04:22] 2026-04-21 14:03:18,459 | INFO     | [job] control thread has finished
[2026-04-21 16:04:22] 2026-04-21 14:03:18,496 | INFO     | [job] validate thread has finished
[2026-04-21 16:04:22] 2026-04-21 14:03:18,652 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-21 16:04:22] 2026-04-21 14:03:19,524 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-21 16:04:22] 2026-04-21 14:03:19,526 | WARNING  | process 3014536 can no longer be monitored (due to stat problems) - aborting
[2026-04-21 16:04:22] 2026-04-21 14:03:19,657 | INFO     | [job] queue monitor thread has finished
[2026-04-21 16:04:22] 2026-04-21 14:03:19,997 | INFO     | using path: /var/lib/boinc/var/slot48/slots/3/memory_monitor_summary.json (trf name=prmon)
[2026-04-21 16:04:22] 2026-04-21 14:03:20,460 | INFO     | number of running child processes to parent process 3014536: 1
[2026-04-21 16:04:22] 2026-04-21 14:03:20,460 | INFO     | maximum number of monitored processes: 6
[2026-04-21 16:04:22] 2026-04-21 14:03:20,460 | INFO     | aborting job monitoring since job object (job id=7105079696) has expired
[2026-04-21 16:04:22] 2026-04-21 14:03:20,461 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-21 16:04:22] 2026-04-21 14:03:20,461 | INFO     | will abort loop
[2026-04-21 16:04:22] 2026-04-21 14:03:21,466 | INFO     | [job] job monitor thread has finished
[2026-04-21 16:04:22] 2026-04-21 14:03:23,530 | INFO     | [data] queue_monitor thread has finished
[2026-04-21 16:04:22] 2026-04-21 14:03:27,128 | INFO     | job.realtimelogging is not enabled
[2026-04-21 16:04:22] 2026-04-21 14:03:28,133 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-21 16:04:22] 2026-04-21 14:03:47,153 | INFO     | PID=3009225 has CPU usage=9.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-21 16:04:22] 2026-04-21 14:03:47,154 | INFO     | .. there are 9 such processes running
[2026-04-21 16:04:22] 2026-04-21 14:03:47,154 | INFO     | found 0 job(s) in 20 queues
[2026-04-21 16:04:22] 2026-04-21 14:03:47,154 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-21 16:04:22] 2026-04-21 14:03:47,154 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-21 16:04:22] 2026-04-21 14:03:51,045 | INFO     | [monitor] cgroup control has ended
[2026-04-21 16:04:22] 2026-04-21 14:03:51,680 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23040518965056)>', '<ExcThread(monitor, started 23040213636864)>']
[2026-04-21 16:04:22] 2026-04-21 14:03:52,179 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-21 16:04:22] 2026-04-21 14:03:52,179 | INFO     | [monitor] control thread has ended
[2026-04-21 16:04:22] 2026-04-21 14:03:56,704 | INFO     | all workflow threads have been joined
[2026-04-21 16:04:22] 2026-04-21 14:03:56,704 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-21 16:04:22] 2026-04-21 14:03:56,704 | INFO     | traces error code: 0
[2026-04-21 16:04:22] 2026-04-21 14:03:56,705 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-21 16:04:22] 2026-04-21 14:03:56,906 [wrapper] ==== pilot stdout END ====
[2026-04-21 16:04:22] 2026-04-21 14:03:56,909 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-21 16:04:22] 2026-04-21 14:03:56,912 [wrapper] pilotpid: 3009225
[2026-04-21 16:04:22] 2026-04-21 14:03:56,915 [wrapper] Pilot exit status: 0
[2026-04-21 16:04:22] 2026-04-21 14:03:56,925 [wrapper] pandaids: 7105079696
[2026-04-21 16:04:22] 2026-04-21 14:03:57,043 [wrapper] cleanup supervisor_pilot 3315404 3009226
[2026-04-21 16:04:22] 2026-04-21 14:03:57,046 [wrapper] Test setup, not cleaning
[2026-04-21 16:04:22] 2026-04-21 14:03:57,049 [wrapper] apfmon messages muted
[2026-04-21 16:04:22] 2026-04-21 14:03:57,052 [wrapper] ==== wrapper stdout END ====
[2026-04-21 16:04:22] 2026-04-21 14:03:57,055 [wrapper] ==== wrapper stderr END ====
[2026-04-21 16:04:22]  *** Error codes and diagnostics ***
[2026-04-21 16:04:22]     "exeErrorCode": 0,
[2026-04-21 16:04:22]     "pilotErrorCode": 0,
[2026-04-21 16:04:22]  *** Listing of results directory ***
[2026-04-21 16:04:22] total 2463052
[2026-04-21 16:04:22] -rwx------. 1 boinc boinc      36322 Apr 21 09:43 runpilot2-wrapper.sh
[2026-04-21 16:04:22] -rw-r--r--. 1 boinc boinc     644190 Apr 21 11:10 pilot3.tar.gz
[2026-04-21 16:04:22] -rw-r--r--. 1 boinc boinc       5094 Apr 21 11:22 queuedata.json
[2026-04-21 16:04:22] -rw-r--r--. 1 boinc boinc        100 Apr 21 12:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-21 16:04:22] -rwxr-xr-x. 1 boinc boinc       7986 Apr 21 12:42 run_atlas
[2026-04-21 16:04:22] -rw-r--r--. 1 boinc boinc        105 Apr 21 12:42 job.xml
[2026-04-21 16:04:22] -rw-r--r--. 1 boinc boinc       6539 Apr 21 12:56 init_data.xml
[2026-04-21 16:04:22] -rw-r--r--. 2 boinc boinc 2245030346 Apr 21 12:56 EVNT.49820242._000025.pool.root.1
[2026-04-21 16:04:22] -rw-r--r--. 2 boinc boinc      15665 Apr 21 12:56 start_atlas.sh
[2026-04-21 16:04:22] drwxrwx--x. 2 boinc boinc       4096 Apr 21 12:56 shared
[2026-04-21 16:04:22] -rw-r--r--. 2 boinc boinc     656928 Apr 21 12:56 input.tar.gz
[2026-04-21 16:04:22] -rw-r--r--. 1 boinc boinc          0 Apr 21 12:56 boinc_lockfile
[2026-04-21 16:04:22] -rw-r--r--. 1 boinc boinc       2551 Apr 21 12:56 pandaJob.out
[2026-04-21 16:04:22] -rw-------. 1 boinc boinc     995858 Apr 21 12:56 agis_schedconf.cvmfs.json
[2026-04-21 16:04:22] -rw-------. 1 boinc boinc        443 Apr 21 12:56 workernode_map.json
[2026-04-21 16:04:22] drwx------. 5 boinc boinc       4096 Apr 21 12:56 pilot3
[2026-04-21 16:04:22] -rw-------. 1 boinc boinc  270039982 Apr 21 16:02 HITS.49820244._013138.pool.root.1
[2026-04-21 16:04:22] -rw-r--r--. 1 boinc boinc        488 Apr 21 16:02 boinc_task_state.xml
[2026-04-21 16:04:22] -rw-------. 1 boinc boinc       1028 Apr 21 16:03 memory_monitor_summary.json
[2026-04-21 16:04:22] -rw-------. 1 boinc boinc    1509089 Apr 21 16:03 agis_ddmendpoints.agis.ALL.json
[2026-04-21 16:04:22] -rw-------. 1 boinc boinc     475029 Apr 21 16:03 log.49820244._013138.job.log.tgz.1
[2026-04-21 16:04:22] -rw-------. 1 boinc boinc       6370 Apr 21 16:03 heartbeat_new.json
[2026-04-21 16:04:22] -rw-------. 1 boinc boinc       6261 Apr 21 16:03 heartbeat.json
[2026-04-21 16:04:22] -rw-------. 1 boinc boinc         95 Apr 21 16:03 pilot_heartbeat.json
[2026-04-21 16:04:22] -rw-------. 1 boinc boinc       5432 Apr 21 16:03 pilotlog.txt
[2026-04-21 16:04:22] -rw-------. 1 boinc boinc    1045874 Apr 21 16:03 log.49820244._013138.job.log.1
[2026-04-21 16:04:22] -rw-------. 1 boinc boinc        357 Apr 21 16:03 output.list
[2026-04-21 16:04:22] -rw-r--r--. 1 boinc boinc        410 Apr 21 16:03 runtime_log
[2026-04-21 16:04:22] -rw-------. 1 boinc boinc    1536000 Apr 21 16:03 result.tar.gz
[2026-04-21 16:04:22] -rw-r--r--. 1 boinc boinc       8827 Apr 21 16:03 runtime_log.err
[2026-04-21 16:04:22] -rw-------. 1 boinc boinc        664 Apr 21 16:03 2a92d10671d4.diag
[2026-04-21 16:04:22] -rw-r--r--. 1 boinc boinc         27 Apr 21 16:04 wrapper_checkpoint.txt
[2026-04-21 16:04:22] -rw-r--r--. 1 boinc boinc       8192 Apr 21 16:04 boinc_mmap_file
[2026-04-21 16:04:22] -rw-r--r--. 1 boinc boinc      20862 Apr 21 16:04 stderr.txt
[2026-04-21 16:04:22] HITS file was successfully produced:
[2026-04-21 16:04:22] -rw-------. 1 boinc boinc 270039982 Apr 21 16:02 shared/HITS.pool.root.1
[2026-04-21 16:04:22]  *** Contents of shared directory: ***
[2026-04-21 16:04:22] total 2458296
[2026-04-21 16:04:22] -rw-r--r--. 2 boinc boinc 2245030346 Apr 21 12:56 ATLAS.root_0
[2026-04-21 16:04:22] -rw-r--r--. 2 boinc boinc      15665 Apr 21 12:56 start_atlas.sh
[2026-04-21 16:04:22] -rw-r--r--. 2 boinc boinc     656928 Apr 21 12:56 input.tar.gz
[2026-04-21 16:04:22] -rw-------. 1 boinc boinc  270039982 Apr 21 16:02 HITS.pool.root.1
[2026-04-21 16:04:22] -rw-------. 1 boinc boinc    1536000 Apr 21 16:03 result.tar.gz
16:04:23 (3005166): run_atlas exited; CPU time 44025.585892
16:04:23 (3005166): called boinc_finish(0)

</stderr_txt>
]]>

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